Wall clock time and date at job start Fri Apr 10 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 119.99703 * 2 1 4 4 O 1.21493 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.48335 * 119.99808 * 179.97438 * 3 2 1 6 6 C 1.39301 * 119.57123 * 179.97438 * 5 3 2 7 7 C 1.38455 * 119.19089 * 179.97438 * 6 5 3 8 8 C 1.39870 * 118.35785 * 0.02562 * 7 6 5 9 9 C 1.48000 * 120.46160 * 180.02562 * 8 7 6 10 10 O 1.21529 * 120.00399 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99804 * 179.97438 * 11 9 8 13 13 C 1.53945 * 113.74380 * 253.74162 * 12 11 9 14 14 N 1.47809 * 86.03792 * 222.08984 * 13 12 11 15 15 C 1.36938 * 134.45651 * 204.64635 * 14 13 12 16 16 H 1.08000 * 120.00138 * 179.86168 * 15 14 13 17 17 C 1.38819 * 119.99967 * 359.86322 * 15 14 13 18 18 N 1.31619 * 119.99847 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00076 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47276 * 120.00356 * 19 17 15 22 22 H 1.48506 * 109.47034 * 240.00121 * 19 17 15 23 23 C 1.47580 * 91.05204 * 24.54664 * 14 13 12 24 24 C 1.39728 * 119.07531 * 0.02562 * 8 7 6 25 25 N 1.31421 * 120.71477 * 0.02562 * 24 8 7 26 26 H 1.08990 * 109.47550 * 300.00422 * 1 2 3 27 27 H 1.09004 * 109.47151 * 60.00491 * 1 2 3 28 28 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00220 * 179.97438 * 2 1 3 30 30 H 1.07997 * 120.40684 * 0.25264 * 6 5 3 31 31 H 1.08004 * 120.81802 * 180.02562 * 7 6 5 32 32 H 0.96997 * 119.99576 * 0.02562 * 11 9 8 33 33 H 1.09001 * 112.94604 * 25.34004 * 12 11 9 34 34 H 1.09000 * 113.76926 * 336.35350 * 13 12 11 35 35 H 1.09002 * 113.76796 * 107.74623 * 13 12 11 36 36 H 0.96995 * 120.00242 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.77103 * 221.14714 * 23 14 13 38 38 H 1.09010 * 113.76449 * 89.75741 * 23 14 13 39 39 H 1.07998 * 119.64001 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6222 1.1673 0.0006 6 6 4.3096 2.3789 0.0000 7 6 5.6941 2.3697 0.0011 8 6 6.3503 1.1345 0.0022 9 6 7.8289 1.0704 0.0039 10 8 8.4816 2.0955 0.0049 11 7 8.4516 -0.1250 0.0055 12 6 9.9152 -0.1884 0.0066 13 6 10.5184 -0.6106 -1.3453 14 7 11.4428 -1.4501 -0.5544 15 6 12.6938 -1.9638 -0.7696 16 1 13.1692 -2.5645 -0.0082 17 6 13.3510 -1.7126 -1.9663 18 7 12.7719 -0.9802 -2.8939 19 14 15.0571 -2.4141 -2.2600 20 1 15.4825 -3.1955 -1.0711 21 1 15.0298 -3.3000 -3.4514 22 1 16.0158 -1.3037 -2.4908 23 6 10.4778 -1.5100 0.5605 24 6 5.5904 -0.0381 0.0016 25 7 4.2772 0.0131 -0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 3.7692 3.3139 0.0033 31 1 6.2536 3.2936 0.0011 32 1 7.9306 -0.9432 0.0050 33 1 10.3787 0.6999 0.4358 34 1 9.8340 -1.1817 -1.9726 35 1 11.0097 0.2022 -1.8802 36 1 13.2311 -0.8043 -3.7299 37 1 10.9368 -1.4141 1.5445 38 1 9.7814 -2.3460 0.4943 39 1 6.0876 -0.9968 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031272911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:49 Heat of formation + Delta-G solvation = 29.112365 kcal Electronic energy + Delta-G solvation = -23359.289160 eV Core-core repulsion = 19690.203211 eV Total energy + Delta-G solvation = -3669.085949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12901 -39.84711 -38.88670 -37.54455 -35.08545 -33.86640 -32.92085 -32.24008 -31.47802 -28.03438 -27.32150 -25.13710 -24.91499 -23.96817 -23.08887 -21.37087 -20.57942 -19.80854 -18.86439 -17.63546 -17.25865 -16.83486 -16.03479 -15.81585 -15.48693 -15.37891 -15.12350 -14.86253 -14.73339 -13.98293 -13.92890 -13.84956 -13.46781 -13.10030 -12.97468 -12.73710 -12.68044 -11.99921 -11.55914 -11.53474 -10.95068 -10.86690 -10.77461 -10.53982 -10.30735 -10.30312 -10.04400 -9.70560 -9.69385 -9.60393 -9.46275 -8.87688 -8.60951 -6.99271 -5.83442 -3.17840 -0.03771 0.81674 2.14352 2.70144 2.97433 3.16830 3.36212 3.41214 3.43918 3.61250 3.65416 4.33895 4.37726 4.43759 4.54614 4.70106 4.79173 4.85300 5.06264 5.09482 5.24785 5.36871 5.40703 5.47081 5.60576 5.69074 5.91845 5.94224 6.06148 6.11598 6.29528 6.45206 6.58941 6.94858 7.15741 7.24639 7.29067 7.47403 7.65418 7.75221 7.90011 8.26719 8.96654 9.63051 10.47964 11.33345 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.034880 B = 0.002375 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.565823 B =11785.792758 C =12115.162937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.572 3.428 4 O -0.530 6.530 5 C 0.089 3.911 6 C -0.116 4.116 7 C -0.023 4.023 8 C -0.153 4.153 9 C 0.556 3.444 10 O -0.529 6.529 11 N -0.705 5.705 12 C 0.090 3.910 13 C 0.154 3.846 14 N -0.607 5.607 15 C -0.226 4.226 16 H 0.083 0.917 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.113 3.887 24 C 0.132 3.868 25 N -0.463 5.463 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.414 0.586 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.396 0.604 33 H 0.114 0.886 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.255 0.745 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.470 1.011 6.872 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.356 3.644 4 O -0.406 6.406 5 C -0.049 4.049 6 C -0.137 4.137 7 C -0.050 4.050 8 C -0.158 4.158 9 C 0.341 3.659 10 O -0.407 6.407 11 N -0.356 5.356 12 C -0.014 4.014 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.354 4.354 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.014 4.014 24 C -0.029 4.029 25 N -0.174 5.174 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.250 0.750 30 H 0.173 0.827 31 H 0.175 0.825 32 H 0.231 0.769 33 H 0.132 0.868 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.646 1.659 6.689 23.672 hybrid contribution 1.332 -0.636 -0.363 1.520 sum -21.314 1.024 6.326 22.257 Atomic orbital electron populations 1.21622 0.78971 1.02664 1.02565 1.45630 1.07865 1.09102 1.74116 1.17928 0.85732 0.84105 0.76596 1.90797 1.68790 1.31303 1.49675 1.21224 0.94153 0.89922 0.99586 1.22126 0.94207 0.99578 0.97765 1.21841 0.93508 0.98619 0.91008 1.21408 0.95487 0.95393 1.03549 1.18009 0.86126 0.84507 0.77303 1.90800 1.66464 1.33899 1.49490 1.46105 1.08862 1.07244 1.73363 1.24044 0.76135 0.99852 1.01379 1.22725 0.89214 0.93966 0.91327 1.45721 1.13019 1.60016 1.14595 1.19026 0.89151 1.26704 1.00479 0.89914 1.24836 0.98919 1.00327 0.96250 1.69829 1.37607 1.41825 1.07195 0.86008 0.83533 0.78208 0.77751 1.20367 1.21672 1.21574 1.22874 0.91505 0.93299 0.93701 1.22972 0.88707 0.98029 0.93171 1.67495 1.10259 1.28215 1.11439 0.91928 0.91901 0.90244 0.75001 0.82715 0.82462 0.76902 0.86845 0.95229 0.90349 0.93504 0.93051 0.94610 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.84 0.64 1.13 16 2 N -0.72 -5.55 5.70 -67.89 -0.39 -5.94 16 3 C 0.57 6.10 7.82 -12.10 -0.09 6.00 16 4 O -0.53 -7.04 16.31 5.37 0.09 -6.95 16 5 C 0.09 0.93 6.75 -82.94 -0.56 0.37 16 6 C -0.12 -1.16 9.62 -39.11 -0.38 -1.54 16 7 C -0.02 -0.25 9.71 -38.89 -0.38 -0.63 16 8 C -0.15 -1.75 5.90 -104.73 -0.62 -2.36 16 9 C 0.56 8.11 7.79 -12.26 -0.10 8.02 16 10 O -0.53 -9.78 16.03 5.34 0.09 -9.69 16 11 N -0.71 -9.84 5.33 -56.24 -0.30 -10.14 16 12 C 0.09 1.65 4.40 -70.15 -0.31 1.34 16 13 C 0.15 3.54 7.33 -2.84 -0.02 3.52 16 14 N -0.61 -15.08 3.70 -177.88 -0.66 -15.74 16 15 C -0.23 -6.21 10.70 -15.06 -0.16 -6.37 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.06 11.39 55.49 0.63 -26.43 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 C 0.11 2.13 8.69 -2.97 -0.03 2.10 16 24 C 0.13 1.26 10.71 -17.17 -0.18 1.07 16 25 N -0.46 -4.54 9.52 -9.48 -0.09 -4.63 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.41 2.61 8.15 -40.82 -0.33 2.27 16 30 H 0.16 1.37 7.63 -52.49 -0.40 0.97 16 31 H 0.16 1.58 7.73 -52.48 -0.41 1.17 16 32 H 0.40 4.21 6.77 -40.82 -0.28 3.93 16 33 H 0.11 2.26 7.50 -51.93 -0.39 1.87 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.61 8.11 -51.92 -0.42 0.18 16 39 H 0.17 1.15 6.41 -52.49 -0.34 0.81 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -34.81 340.78 -7.39 -42.20 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.59 Total: 2.99 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -2.28 Total: 12.38 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.80 Total: -62.87 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.17 Total: -16.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.81 -7.39 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031272911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.311 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds