Wall clock time and date at job start Fri Apr 10 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 119.99703 * 2 1 4 4 O 1.21493 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.48335 * 119.99808 * 179.97438 * 3 2 1 6 6 C 1.39301 * 119.57123 * 179.97438 * 5 3 2 7 7 C 1.38455 * 119.19089 * 179.97438 * 6 5 3 8 8 C 1.39870 * 118.35785 * 0.02562 * 7 6 5 9 9 C 1.48000 * 120.46160 * 180.02562 * 8 7 6 10 10 O 1.21529 * 120.00399 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99804 * 179.97438 * 11 9 8 13 13 C 1.53945 * 113.74380 * 253.74162 * 12 11 9 14 14 N 1.47809 * 86.03792 * 222.08984 * 13 12 11 15 15 C 1.36938 * 134.45651 * 204.64635 * 14 13 12 16 16 H 1.08000 * 120.00138 * 179.86168 * 15 14 13 17 17 C 1.38819 * 119.99967 * 359.86322 * 15 14 13 18 18 N 1.31619 * 119.99847 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00076 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47276 * 120.00356 * 19 17 15 22 22 H 1.48506 * 109.47034 * 240.00121 * 19 17 15 23 23 C 1.47580 * 91.05204 * 24.54664 * 14 13 12 24 24 C 1.39728 * 119.07531 * 0.02562 * 8 7 6 25 25 N 1.31421 * 120.71477 * 0.02562 * 24 8 7 26 26 H 1.08990 * 109.47550 * 300.00422 * 1 2 3 27 27 H 1.09004 * 109.47151 * 60.00491 * 1 2 3 28 28 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00220 * 179.97438 * 2 1 3 30 30 H 1.07997 * 120.40684 * 0.25264 * 6 5 3 31 31 H 1.08004 * 120.81802 * 180.02562 * 7 6 5 32 32 H 0.96997 * 119.99576 * 0.02562 * 11 9 8 33 33 H 1.09001 * 112.94604 * 25.34004 * 12 11 9 34 34 H 1.09000 * 113.76926 * 336.35350 * 13 12 11 35 35 H 1.09002 * 113.76796 * 107.74623 * 13 12 11 36 36 H 0.96995 * 120.00242 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.77103 * 221.14714 * 23 14 13 38 38 H 1.09010 * 113.76449 * 89.75741 * 23 14 13 39 39 H 1.07998 * 119.64001 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6222 1.1673 0.0006 6 6 4.3096 2.3789 0.0000 7 6 5.6941 2.3697 0.0011 8 6 6.3503 1.1345 0.0022 9 6 7.8289 1.0704 0.0039 10 8 8.4816 2.0955 0.0049 11 7 8.4516 -0.1250 0.0055 12 6 9.9152 -0.1884 0.0066 13 6 10.5184 -0.6106 -1.3453 14 7 11.4428 -1.4501 -0.5544 15 6 12.6938 -1.9638 -0.7696 16 1 13.1692 -2.5645 -0.0082 17 6 13.3510 -1.7126 -1.9663 18 7 12.7719 -0.9802 -2.8939 19 14 15.0571 -2.4141 -2.2600 20 1 15.4825 -3.1955 -1.0711 21 1 15.0298 -3.3000 -3.4514 22 1 16.0158 -1.3037 -2.4908 23 6 10.4778 -1.5100 0.5605 24 6 5.5904 -0.0381 0.0016 25 7 4.2772 0.0131 -0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 3.7692 3.3139 0.0033 31 1 6.2536 3.2936 0.0011 32 1 7.9306 -0.9432 0.0050 33 1 10.3787 0.6999 0.4358 34 1 9.8340 -1.1817 -1.9726 35 1 11.0097 0.2022 -1.8802 36 1 13.2311 -0.8043 -3.7299 37 1 10.9368 -1.4141 1.5445 38 1 9.7814 -2.3460 0.4943 39 1 6.0876 -0.9968 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031272911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:49 Heat of formation + Delta-G solvation = 1.722291 kcal Electronic energy + Delta-G solvation = -23360.476883 eV Core-core repulsion = 19690.203211 eV Total energy + Delta-G solvation = -3670.273671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.01610 -40.95918 -39.94747 -39.03509 -35.80121 -35.32061 -33.99536 -33.70329 -32.59863 -29.54301 -28.35605 -26.61266 -26.14679 -24.81093 -24.63813 -22.36970 -21.59912 -21.39643 -19.65941 -18.81870 -18.70437 -18.14941 -17.17423 -16.97066 -16.59052 -16.43993 -16.17251 -16.04711 -15.85086 -15.65841 -14.96442 -14.82599 -14.52957 -14.28839 -13.90783 -13.79106 -13.61609 -13.31441 -13.19067 -13.08515 -12.83815 -12.66207 -12.29052 -11.92462 -11.62752 -11.53907 -11.34342 -11.14876 -10.89980 -10.70378 -10.53334 -10.17393 -9.99587 -8.96757 -7.92119 -5.26925 -0.91455 0.02627 1.24691 1.46591 1.47991 1.58242 1.93169 1.96471 2.03211 2.48946 2.73090 2.90135 3.25988 3.37630 3.54205 3.61865 3.73272 3.80629 3.83533 3.97459 4.32626 4.44750 4.48353 4.56348 4.63368 4.77462 4.80483 4.87894 4.93045 4.95666 5.09994 5.24275 5.26344 5.31582 5.49866 5.66727 5.90078 6.22891 6.46750 6.55674 6.88848 7.03138 7.12211 7.58766 8.50800 9.24883 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.034880 B = 0.002375 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.565823 B =11785.792758 C =12115.162937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.703 5.703 3 C 0.566 3.434 4 O -0.563 6.563 5 C 0.087 3.913 6 C -0.117 4.117 7 C -0.022 4.022 8 C -0.163 4.163 9 C 0.560 3.440 10 O -0.573 6.573 11 N -0.691 5.691 12 C 0.120 3.880 13 C 0.150 3.850 14 N -0.641 5.641 15 C -0.230 4.230 16 H 0.092 0.908 17 C -0.071 4.071 18 N -0.956 5.956 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.292 1.292 22 H -0.295 1.295 23 C 0.123 3.877 24 C 0.144 3.856 25 N -0.459 5.459 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.423 0.577 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.416 0.584 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.913 -0.940 8.175 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.354 5.354 3 C 0.351 3.649 4 O -0.442 6.442 5 C -0.050 4.050 6 C -0.137 4.137 7 C -0.048 4.048 8 C -0.169 4.169 9 C 0.347 3.653 10 O -0.453 6.453 11 N -0.343 5.343 12 C 0.014 3.986 13 C 0.024 3.976 14 N -0.368 5.368 15 C -0.359 4.359 16 H 0.109 0.891 17 C -0.264 4.264 18 N -0.604 5.604 19 Si 0.809 3.191 20 H -0.185 1.185 21 H -0.220 1.220 22 H -0.222 1.222 23 C -0.002 4.002 24 C -0.016 4.016 25 N -0.170 5.170 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.260 0.740 30 H 0.181 0.819 31 H 0.176 0.824 32 H 0.255 0.745 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -24.153 -0.365 8.040 25.458 hybrid contribution 1.642 -0.035 -0.723 1.794 sum -22.511 -0.399 7.317 23.674 Atomic orbital electron populations 1.21821 0.77576 1.04777 1.02084 1.45673 1.08842 1.08591 1.72292 1.18026 0.85821 0.84449 0.76623 1.90782 1.69312 1.32497 1.51566 1.21369 0.94370 0.90282 0.99009 1.22190 0.93820 1.00046 0.97682 1.21907 0.93802 0.98626 0.90495 1.21131 0.93302 0.96587 1.05871 1.18390 0.87329 0.83702 0.75846 1.90789 1.67727 1.35397 1.51388 1.45759 1.07086 1.08321 1.73107 1.23258 0.78423 0.99167 0.97723 1.22624 0.89231 0.92688 0.93086 1.46060 1.13450 1.60417 1.16856 1.19459 0.90486 1.25561 1.00368 0.89072 1.25704 1.02780 1.01425 0.96473 1.70031 1.39096 1.43839 1.07482 0.84969 0.79013 0.77222 0.77873 1.18458 1.21957 1.22249 1.23044 0.90510 0.94064 0.92599 1.23373 0.88463 0.98429 0.91379 1.67578 1.10165 1.27675 1.11570 0.92330 0.92461 0.86870 0.73989 0.81934 0.82424 0.74480 0.88636 0.95233 0.94915 0.94313 0.91530 0.91049 0.78429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.70 127.77 1.37 2.11 16 2 N -0.70 -9.42 5.70 -487.00 -2.78 -12.20 16 3 C 0.57 11.29 7.82 86.93 0.68 11.97 16 4 O -0.56 -14.60 16.31 -3.69 -0.06 -14.66 16 5 C 0.09 1.67 6.75 41.96 0.28 1.96 16 6 C -0.12 -2.20 9.62 22.58 0.22 -1.98 16 7 C -0.02 -0.44 9.71 22.72 0.22 -0.22 16 8 C -0.16 -3.45 5.90 -19.93 -0.12 -3.57 16 9 C 0.56 15.76 7.79 86.83 0.68 16.43 16 10 O -0.57 -21.33 16.03 -3.81 -0.06 -21.39 16 11 N -0.69 -17.92 5.33 -450.12 -2.40 -20.32 16 12 C 0.12 4.29 4.40 46.75 0.21 4.50 16 13 C 0.15 7.02 7.33 86.44 0.63 7.65 16 14 N -0.64 -31.57 3.70 -716.68 -2.65 -34.22 16 15 C -0.23 -12.59 10.70 84.03 0.90 -11.69 16 16 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 17 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 18 N -0.96 -58.07 11.39 21.65 0.25 -57.83 16 19 Si 0.98 45.32 29.55 68.60 2.03 47.34 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 C 0.12 4.32 8.69 86.49 0.75 5.07 16 24 C 0.14 2.32 10.71 85.11 0.91 3.23 16 25 N -0.46 -7.76 9.52 -183.91 -1.75 -9.51 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.42 4.16 8.15 -92.71 -0.76 3.41 16 30 H 0.16 2.78 7.63 -2.91 -0.02 2.76 16 31 H 0.16 3.15 7.73 -2.91 -0.02 3.13 16 32 H 0.42 7.38 6.77 -92.71 -0.63 6.76 16 33 H 0.10 3.83 7.50 -2.39 -0.02 3.81 16 34 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 1.81 7.16 -2.39 -0.02 1.79 16 36 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.08 8.11 -2.38 -0.02 2.06 16 39 H 0.20 1.85 6.41 -2.91 -0.02 1.83 16 Total: -1.00 -77.61 340.78 -0.50 -78.11 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -0.27 Total: 12.78 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 7.19 Total: 31.90 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -9.33 Total: -134.08 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.12 Total: -36.05 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -77.61 -0.50 -78.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031272911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.833 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds