Wall clock time and date at job start Fri Apr 10 2020 14:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36939 * 120.00095 * 2 1 4 4 H 1.08004 * 119.99957 * 201.72630 * 3 2 1 5 5 C 1.38803 * 120.00077 * 21.72843 * 3 2 1 6 6 N 1.31623 * 120.00066 * 13.62625 * 5 3 2 7 7 Si 1.86806 * 119.99993 * 193.63032 * 5 3 2 8 8 H 1.48494 * 109.47152 * 59.99755 * 7 5 3 9 9 H 1.48504 * 109.46793 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46953 * 299.99655 * 7 5 3 11 11 C 1.46498 * 120.00089 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.92166 * 177.55002 * 11 2 1 13 13 C 1.55160 * 111.00492 * 301.44948 * 11 2 1 14 14 C 1.54319 * 102.94336 * 153.57348 * 13 11 2 15 15 N 1.47025 * 107.27301 * 337.80918 * 14 13 11 16 16 C 1.34776 * 125.64729 * 178.89172 * 15 14 13 17 17 O 1.21286 * 119.99551 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00446 * 0.02662 * 16 15 14 19 19 C 1.52998 * 109.47280 * 179.97438 * 18 16 15 20 20 S 1.81404 * 109.47134 * 180.02562 * 19 18 16 21 21 C 1.81395 * 101.92330 * 180.02562 * 20 19 18 22 22 O 1.42105 * 108.57620 * 294.48475 * 20 19 18 23 23 O 1.42096 * 108.58032 * 65.51138 * 20 19 18 24 24 C 1.47417 * 108.70235 * 358.94102 * 15 14 13 25 25 H 1.09007 * 109.46957 * 274.44605 * 1 2 3 26 26 H 1.09003 * 109.47461 * 34.44263 * 1 2 3 27 27 H 1.09002 * 109.47505 * 154.45149 * 1 2 3 28 28 H 0.96998 * 119.99802 * 180.02562 * 6 5 3 29 29 H 1.08992 * 110.71974 * 271.94220 * 13 11 2 30 30 H 1.08999 * 110.71480 * 35.21646 * 13 11 2 31 31 H 1.09002 * 109.88521 * 97.22814 * 14 13 11 32 32 H 1.08999 * 109.88498 * 218.23955 * 14 13 11 33 33 H 1.08998 * 109.47274 * 300.00102 * 18 16 15 34 34 H 1.09005 * 109.47023 * 59.99878 * 18 16 15 35 35 H 1.08996 * 109.46872 * 299.99824 * 19 18 16 36 36 H 1.08997 * 109.46961 * 60.00284 * 19 18 16 37 37 H 1.09006 * 109.47172 * 59.99748 * 21 20 19 38 38 H 1.09000 * 109.47478 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47056 * 300.00063 * 21 20 19 40 40 H 1.08998 * 110.36830 * 265.28890 * 24 15 14 41 41 H 1.09000 * 110.36746 * 142.96465 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1721 1.2191 -0.3462 5 6 1.5296 2.3453 0.4450 6 7 0.3964 2.2718 1.1105 7 14 2.3034 4.0100 0.0993 8 1 2.4205 4.2063 -1.3680 9 1 1.4517 5.0811 0.6762 10 1 3.6533 4.0660 0.7155 11 6 2.1974 -1.2687 -0.0006 12 1 3.2730 -1.0971 -0.0440 13 6 1.8210 -2.1288 1.2348 14 6 2.0895 -3.5685 0.7483 15 7 2.0418 -3.5489 -0.7210 16 6 2.2476 -4.6087 -1.5278 17 8 2.1837 -4.4757 -2.7317 18 6 2.5571 -5.9588 -0.9342 19 6 2.7445 -6.9794 -2.0585 20 16 3.1164 -8.6048 -1.3439 21 6 3.2959 -9.6339 -2.8268 22 8 4.3749 -8.5336 -0.6878 23 8 1.9795 -9.0508 -0.6175 24 6 1.7327 -2.1778 -1.1657 25 1 -0.3633 0.0797 1.0246 26 1 -0.3634 0.8475 -0.5812 27 1 -0.3634 -0.9272 -0.4432 28 1 -0.0370 3.0820 1.4212 29 1 2.4585 -1.8835 2.0841 30 1 0.7694 -1.9978 1.4898 31 1 3.0740 -3.8954 1.0829 32 1 1.3241 -4.2400 1.1374 33 1 3.4715 -5.8954 -0.3444 34 1 1.7326 -6.2717 -0.2936 35 1 1.8298 -7.0427 -2.6479 36 1 3.5689 -6.6667 -2.6994 37 1 4.1046 -9.2432 -3.4446 38 1 3.5262 -10.6580 -2.5327 39 1 2.3655 -9.6190 -3.3943 40 1 0.6612 -2.0649 -1.3306 41 1 2.2845 -1.9405 -2.0752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190957768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:28 Heat of formation + Delta-G solvation = -73.213549 kcal Electronic energy + Delta-G solvation = -23080.530157 eV Core-core repulsion = 19510.158224 eV Total energy + Delta-G solvation = -3570.371933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -39.93628 -37.61000 -37.32036 -36.37726 -34.86856 -33.41494 -31.64008 -30.07086 -29.82666 -28.14048 -26.13033 -25.39108 -23.11964 -22.28746 -19.37794 -19.23286 -19.11859 -17.59847 -17.13349 -16.68675 -16.47732 -16.06696 -15.99861 -15.34944 -15.00005 -14.39863 -13.79006 -13.67709 -13.60637 -13.44379 -13.35117 -12.89493 -12.71516 -12.52201 -12.43464 -12.37952 -12.32606 -11.95621 -11.74867 -11.45280 -11.38138 -10.99725 -10.97200 -10.80890 -10.55014 -10.48049 -10.29585 -9.95494 -9.91691 -9.76499 -8.62275 -8.43274 -6.86400 -5.79948 -3.26204 -0.41547 2.34253 2.64974 2.98317 3.33933 3.35870 3.41591 3.43033 3.64089 4.13755 4.34498 4.36764 4.43391 4.53136 4.60875 4.98162 5.05224 5.15952 5.21898 5.25759 5.35324 5.45016 5.49384 5.55524 5.71154 5.86491 5.97108 6.21734 6.33826 6.46797 6.58836 6.74596 6.83168 7.31018 7.64383 7.67430 7.74555 8.19851 8.31244 9.15019 9.77358 10.25167 11.24958 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.002606 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.974537 B =10741.344194 C =10859.684490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.096 3.904 15 N -0.611 5.611 16 C 0.532 3.468 17 O -0.546 6.546 18 C -0.130 4.130 19 C -0.593 4.593 20 S 2.421 3.579 21 C -0.655 4.655 22 O -0.939 6.939 23 O -0.939 6.939 24 C 0.084 3.916 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.002 0.998 28 H 0.254 0.746 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -21.528 -4.668 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.027 4.027 15 N -0.344 5.344 16 C 0.319 3.681 17 O -0.425 6.425 18 C -0.171 4.171 19 C -0.723 4.723 20 S 2.603 3.397 21 C -0.804 4.804 22 O -0.936 6.936 23 O -0.936 6.936 24 C -0.040 4.040 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.011 -21.583 -4.392 22.387 hybrid contribution 0.203 1.118 -0.933 1.470 sum 4.214 -20.465 -5.325 21.562 Atomic orbital electron populations 1.20839 0.82367 0.95802 0.99558 1.43815 1.01909 0.99840 1.85006 1.19182 0.97780 0.85033 1.37071 0.91225 1.24999 0.97781 0.98541 0.98083 1.70067 1.18805 1.27300 1.38814 0.86296 0.78409 0.83520 0.78064 1.21004 1.21600 1.20875 1.21410 0.96346 0.85827 0.90191 0.90338 1.23251 1.03104 0.92116 1.00769 1.22168 1.01065 0.99825 0.79658 1.48476 1.68821 1.09604 1.07522 1.19781 0.77210 0.84719 0.86375 1.90687 1.52537 1.84923 1.14336 1.21322 1.05510 0.92869 0.97384 1.30138 1.13503 1.18618 1.09995 1.07816 0.75487 0.78411 0.77945 1.30245 1.11888 1.16268 1.22035 1.93611 1.42726 1.85974 1.71288 1.93610 1.51901 1.79888 1.68217 1.23009 1.01271 0.79601 1.00105 0.94972 0.93616 0.97974 0.93573 0.90356 0.90456 0.91529 0.91719 0.87259 0.87316 0.84213 0.84175 0.85188 0.85233 0.85200 0.91063 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.82 59.84 0.47 4.20 16 2 N -0.59 -13.98 2.96 -171.03 -0.51 -14.48 16 3 C -0.26 -6.93 9.63 -15.06 -0.15 -7.08 16 4 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 5 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 6 N -0.91 -25.60 10.67 55.49 0.59 -25.01 16 7 Si 0.91 21.38 29.58 -169.99 -5.03 16.35 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.34 3.54 -65.78 -0.23 3.10 16 12 H 0.08 1.53 7.94 -51.93 -0.41 1.11 16 13 C -0.15 -2.45 6.54 -24.90 -0.16 -2.61 16 14 C 0.10 1.24 6.49 -3.06 -0.02 1.22 16 15 N -0.61 -9.24 3.33 -170.52 -0.57 -9.80 16 16 C 0.53 7.71 7.85 -10.99 -0.09 7.62 16 17 O -0.55 -9.62 16.24 5.55 0.09 -9.53 16 18 C -0.13 -1.29 4.90 -27.89 -0.14 -1.43 16 19 C -0.59 -4.38 5.09 37.16 0.19 -4.19 16 20 S 2.42 16.40 5.36 -107.50 -0.58 15.82 16 21 C -0.65 -2.23 10.62 101.05 1.07 -1.16 16 22 O -0.94 -9.79 18.10 -57.83 -1.05 -10.84 16 23 O -0.94 -9.78 18.10 -57.83 -1.05 -10.83 16 24 C 0.08 1.50 6.45 -2.53 -0.02 1.49 16 25 H 0.03 0.81 7.41 -51.92 -0.38 0.43 16 26 H 0.05 1.17 7.22 -51.93 -0.38 0.80 16 27 H 0.00 0.04 6.03 -51.93 -0.31 -0.27 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.34 7.28 -51.93 -0.38 0.96 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.14 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.14 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 38 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 40 H 0.07 1.34 6.03 -51.93 -0.31 1.03 16 41 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -36.40 347.08 -8.38 -44.78 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.36 Total: -2.90 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.84 Total: 1.21 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.48 Total: -49.30 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -2.00 Total: -31.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 16.40 SS G_CDS: -0.58 Total: 15.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.40 -8.38 -44.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190957768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.434 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds