Wall clock time and date at job start Fri Apr 10 2020 14:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36898 * 119.99904 * 2 1 4 4 H 1.08005 * 119.99580 * 209.50036 * 3 2 1 5 5 C 1.39019 * 120.00310 * 29.49982 * 3 2 1 6 6 N 1.31381 * 119.99820 * 26.54163 * 5 3 2 7 7 Si 1.86806 * 120.00269 * 206.53671 * 5 3 2 8 8 H 1.48501 * 109.46736 * 59.99797 * 7 5 3 9 9 H 1.48493 * 109.47362 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46905 * 300.00222 * 7 5 3 11 11 C 1.34771 * 119.99670 * 179.97438 * 2 1 3 12 12 O 1.21627 * 120.00069 * 184.51845 * 11 2 1 13 13 C 1.47493 * 120.00305 * 4.52010 * 11 2 1 14 14 C 1.40351 * 120.48608 * 311.18941 * 13 11 2 15 15 C 1.36916 * 118.47576 * 179.97438 * 14 13 11 16 16 C 1.39295 * 119.38953 * 0.02562 * 15 14 13 17 17 N 1.38947 * 119.52416 * 179.97438 * 16 15 14 18 18 C 1.46379 * 119.32777 * 84.89115 * 17 16 15 19 19 C 1.53496 * 109.00940 * 150.82736 * 18 17 16 20 20 C 1.53243 * 108.43236 * 55.79434 * 19 18 17 21 21 N 1.46386 * 109.15046 * 304.37662 * 20 19 18 22 22 C 1.34130 * 119.32945 * 265.16830 * 17 16 15 23 23 O 1.21571 * 118.70004 * 0.52580 * 22 17 16 24 24 N 1.32538 * 120.94966 * 0.02562 * 16 15 14 25 25 C 1.31664 * 121.66057 * 359.97438 * 24 16 15 26 26 H 1.09002 * 109.47407 * 294.94229 * 1 2 3 27 27 H 1.09006 * 109.47187 * 54.94177 * 1 2 3 28 28 H 1.09002 * 109.47174 * 174.94102 * 1 2 3 29 29 H 0.97003 * 120.00140 * 180.02562 * 6 5 3 30 30 H 1.07999 * 120.75997 * 0.25870 * 14 13 11 31 31 H 1.07992 * 120.30402 * 179.97438 * 15 14 13 32 32 H 1.08996 * 109.52780 * 270.86813 * 18 17 16 33 33 H 1.08997 * 109.52206 * 31.06396 * 18 17 16 34 34 H 1.09004 * 109.80470 * 296.03912 * 19 18 17 35 35 H 1.09002 * 109.72816 * 175.49668 * 19 18 17 36 36 H 1.08999 * 109.52550 * 184.48184 * 20 19 18 37 37 H 1.08989 * 109.57799 * 64.31156 * 20 19 18 38 38 H 0.96994 * 119.33485 * 209.08054 * 21 20 19 39 39 H 1.07994 * 119.75191 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1245 1.2462 -0.4606 5 6 1.5896 2.3115 0.5928 6 7 0.7175 2.1764 1.5661 7 14 2.0773 4.0165 0.0057 8 1 1.7364 4.1611 -1.4324 9 1 1.3449 5.0399 0.7940 10 1 3.5390 4.2038 0.1891 11 6 2.1388 -1.1672 0.0005 12 8 3.3522 -1.1689 0.0835 13 6 1.4048 -2.4426 -0.0996 14 6 0.2996 -2.6949 0.7279 15 6 -0.3519 -3.8923 0.5999 16 6 0.0972 -4.8179 -0.3392 17 7 -0.5616 -6.0341 -0.4711 18 6 -1.7441 -6.1197 -1.3296 19 6 -1.8498 -7.5430 -1.8946 20 6 -1.8686 -8.5295 -0.7221 21 7 -0.6824 -8.3119 0.1076 22 6 -0.1043 -7.1046 0.1952 23 8 0.8731 -6.9758 0.9066 24 7 1.1444 -4.5555 -1.1081 25 6 1.7998 -3.4171 -1.0182 26 1 -0.3634 0.4334 0.9318 27 1 -0.3634 0.5903 -0.8413 28 1 -0.3634 -1.0237 -0.0906 29 1 0.3265 2.9620 1.9795 30 1 -0.0322 -1.9595 1.4459 31 1 -1.2055 -4.1174 1.2219 32 1 -2.6353 -5.8886 -0.7463 33 1 -1.6504 -5.4088 -2.1505 34 1 -0.9922 -7.7510 -2.5344 35 1 -2.7694 -7.6425 -2.4714 36 1 -1.8632 -9.5501 -1.1047 37 1 -2.7657 -8.3692 -0.1243 38 1 -0.3066 -9.0557 0.6038 39 1 2.6494 -3.2357 -1.6598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198462298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:39 Heat of formation + Delta-G solvation = 9.819684 kcal Electronic energy + Delta-G solvation = -24615.398534 eV Core-core repulsion = 20945.475992 eV Total energy + Delta-G solvation = -3669.922542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24342 -39.79316 -38.00600 -36.62557 -35.09715 -34.71402 -32.64823 -31.58780 -31.38846 -29.86964 -26.49908 -26.26066 -25.07184 -23.98984 -23.27155 -22.62226 -19.91967 -19.49941 -17.88480 -17.58777 -17.15204 -16.66130 -16.34377 -16.15298 -15.58218 -15.10797 -14.45660 -14.36426 -14.18670 -14.07052 -14.01905 -13.77566 -13.41113 -13.23009 -12.89510 -12.41899 -12.18163 -11.77490 -11.74049 -11.59986 -11.46886 -11.31433 -10.99871 -10.50236 -10.40799 -10.25874 -9.78891 -9.47541 -9.33880 -9.13633 -8.90383 -8.76270 -8.38298 -7.64078 -6.43059 -3.98823 1.05816 1.53240 2.37834 3.02500 3.14220 3.21655 3.25507 3.48013 3.66378 4.06946 4.13280 4.26957 4.40639 4.64557 4.72699 4.81075 4.93919 4.99650 5.08287 5.12451 5.21704 5.24687 5.33349 5.40084 5.57138 5.66367 5.92018 6.01573 6.11137 6.21844 6.43523 6.51424 6.57668 6.82315 7.02342 7.04709 7.51042 7.56954 8.04613 8.15013 8.38888 8.46460 9.07545 9.28794 9.88099 10.57427 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.035441 B = 0.003142 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.865578 B = 8908.259675 C = 9147.128880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.425 5.425 3 C -0.318 4.318 4 H 0.099 0.901 5 C 0.041 3.959 6 N -0.858 5.858 7 Si 0.920 3.080 8 H -0.272 1.272 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.482 3.518 12 O -0.575 6.575 13 C -0.135 4.135 14 C -0.045 4.045 15 C -0.157 4.157 16 C 0.356 3.644 17 N -0.570 5.570 18 C 0.116 3.884 19 C -0.153 4.153 20 C 0.109 3.891 21 N -0.737 5.737 22 C 0.717 3.283 23 O -0.579 6.579 24 N -0.484 5.484 25 C 0.147 3.853 26 H 0.091 0.909 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.270 0.730 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 -16.982 -5.905 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.142 5.142 3 C -0.445 4.445 4 H 0.117 0.883 5 C -0.165 4.165 6 N -0.494 5.494 7 Si 0.746 3.254 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.270 3.730 12 O -0.460 6.460 13 C -0.140 4.140 14 C -0.072 4.072 15 C -0.179 4.179 16 C 0.129 3.871 17 N -0.306 5.306 18 C -0.007 4.007 19 C -0.191 4.191 20 C -0.015 4.015 21 N -0.396 5.396 22 C 0.418 3.582 23 O -0.455 6.455 24 N -0.194 5.194 25 C -0.011 4.011 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.492 -17.244 -6.062 22.140 hybrid contribution -0.280 1.100 0.515 1.246 sum -12.771 -16.145 -5.547 21.320 Atomic orbital electron populations 1.22168 0.82140 0.99647 1.03949 1.43406 1.05138 1.04505 1.61137 1.19468 1.04525 0.84511 1.36024 0.88320 1.25355 0.97018 1.00412 0.93750 1.69949 1.29550 1.31241 1.18709 0.86097 0.79174 0.81086 0.79023 1.19767 1.20923 1.19540 1.17831 0.87484 0.82714 0.84981 1.90661 1.13360 1.86442 1.55498 1.21472 0.96452 0.98255 0.97825 1.21566 0.92545 0.95947 0.97114 1.21604 1.02588 0.94410 0.99341 1.17679 0.90854 0.85563 0.93028 1.43832 1.30075 1.07196 1.49458 1.21720 0.86933 0.97924 0.94096 1.22260 1.04577 0.94215 0.98055 1.21547 0.88122 1.00039 0.91812 1.44901 1.32441 1.09807 1.52402 1.15317 0.82298 0.80315 0.80227 1.91021 1.27747 1.83408 1.43360 1.67235 1.06626 1.20749 1.24814 1.22653 0.96833 0.86359 0.95293 0.89113 0.93780 0.92942 0.91935 0.83391 0.84752 0.90952 0.89583 0.90061 0.88246 0.89804 0.91576 0.74659 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.37 8.67 59.85 0.52 1.89 16 2 N -0.42 -10.79 2.97 -123.40 -0.37 -11.16 16 3 C -0.32 -8.76 9.01 -15.00 -0.14 -8.90 16 4 H 0.10 2.84 7.69 -52.48 -0.40 2.44 16 5 C 0.04 1.06 5.00 -17.45 -0.09 0.98 16 6 N -0.86 -22.47 11.40 55.50 0.63 -21.84 16 7 Si 0.92 20.11 29.63 -169.99 -5.04 15.07 16 8 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 C 0.48 12.14 7.20 -12.49 -0.09 12.05 16 12 O -0.57 -16.62 16.84 5.25 0.09 -16.53 16 13 C -0.13 -2.77 5.09 -104.81 -0.53 -3.30 16 14 C -0.04 -0.79 7.39 -39.27 -0.29 -1.08 16 15 C -0.16 -2.46 9.95 -39.67 -0.39 -2.85 16 16 C 0.36 5.92 5.21 -154.90 -0.81 5.11 16 17 N -0.57 -7.76 2.90 -120.95 -0.35 -8.11 16 18 C 0.12 0.99 6.50 -3.85 -0.03 0.97 16 19 C -0.15 -0.88 6.21 -26.35 -0.16 -1.04 16 20 C 0.11 0.59 7.20 -3.98 -0.03 0.56 16 21 N -0.74 -7.08 5.59 -65.53 -0.37 -7.45 16 22 C 0.72 10.60 8.14 -88.07 -0.72 9.89 16 23 O -0.58 -11.53 16.94 5.30 0.09 -11.44 16 24 N -0.48 -8.97 10.39 -12.04 -0.13 -9.09 16 25 C 0.15 2.84 10.89 -17.10 -0.19 2.66 16 26 H 0.09 2.05 6.20 -51.93 -0.32 1.73 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.94 4.17 -51.93 -0.22 0.73 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.15 2.52 6.87 -52.49 -0.36 2.16 16 31 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.29 8.14 -51.94 -0.42 -0.14 16 38 H 0.42 3.44 8.88 -40.82 -0.36 3.08 16 39 H 0.16 3.01 8.06 -52.49 -0.42 2.58 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -36.40 329.56 -8.01 -44.41 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.60 Total: 4.25 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: -2.94 Total: 16.92 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.58 Total: -57.65 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: 0.18 Total: -27.97 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.04 Total: 15.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.40 -8.01 -44.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198462298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.227 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds