Wall clock time and date at job start Fri Apr 10 2020 14:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36898 * 119.99904 * 2 1 4 4 H 1.08005 * 119.99580 * 209.50036 * 3 2 1 5 5 C 1.39019 * 120.00310 * 29.49982 * 3 2 1 6 6 N 1.31381 * 119.99820 * 26.54163 * 5 3 2 7 7 Si 1.86806 * 120.00269 * 206.53671 * 5 3 2 8 8 H 1.48501 * 109.46736 * 59.99797 * 7 5 3 9 9 H 1.48493 * 109.47362 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46905 * 300.00222 * 7 5 3 11 11 C 1.34771 * 119.99670 * 179.97438 * 2 1 3 12 12 O 1.21627 * 120.00069 * 184.51845 * 11 2 1 13 13 C 1.47493 * 120.00305 * 4.52010 * 11 2 1 14 14 C 1.40351 * 120.48608 * 311.18941 * 13 11 2 15 15 C 1.36916 * 118.47576 * 179.97438 * 14 13 11 16 16 C 1.39295 * 119.38953 * 0.02562 * 15 14 13 17 17 N 1.38947 * 119.52416 * 179.97438 * 16 15 14 18 18 C 1.46379 * 119.32777 * 84.89115 * 17 16 15 19 19 C 1.53496 * 109.00940 * 150.82736 * 18 17 16 20 20 C 1.53243 * 108.43236 * 55.79434 * 19 18 17 21 21 N 1.46386 * 109.15046 * 304.37662 * 20 19 18 22 22 C 1.34130 * 119.32945 * 265.16830 * 17 16 15 23 23 O 1.21571 * 118.70004 * 0.52580 * 22 17 16 24 24 N 1.32538 * 120.94966 * 0.02562 * 16 15 14 25 25 C 1.31664 * 121.66057 * 359.97438 * 24 16 15 26 26 H 1.09002 * 109.47407 * 294.94229 * 1 2 3 27 27 H 1.09006 * 109.47187 * 54.94177 * 1 2 3 28 28 H 1.09002 * 109.47174 * 174.94102 * 1 2 3 29 29 H 0.97003 * 120.00140 * 180.02562 * 6 5 3 30 30 H 1.07999 * 120.75997 * 0.25870 * 14 13 11 31 31 H 1.07992 * 120.30402 * 179.97438 * 15 14 13 32 32 H 1.08996 * 109.52780 * 270.86813 * 18 17 16 33 33 H 1.08997 * 109.52206 * 31.06396 * 18 17 16 34 34 H 1.09004 * 109.80470 * 296.03912 * 19 18 17 35 35 H 1.09002 * 109.72816 * 175.49668 * 19 18 17 36 36 H 1.08999 * 109.52550 * 184.48184 * 20 19 18 37 37 H 1.08989 * 109.57799 * 64.31156 * 20 19 18 38 38 H 0.96994 * 119.33485 * 209.08054 * 21 20 19 39 39 H 1.07994 * 119.75191 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1245 1.2462 -0.4606 5 6 1.5896 2.3115 0.5928 6 7 0.7175 2.1764 1.5661 7 14 2.0773 4.0165 0.0057 8 1 1.7364 4.1611 -1.4324 9 1 1.3449 5.0399 0.7940 10 1 3.5390 4.2038 0.1891 11 6 2.1388 -1.1672 0.0005 12 8 3.3522 -1.1689 0.0835 13 6 1.4048 -2.4426 -0.0996 14 6 0.2996 -2.6949 0.7279 15 6 -0.3519 -3.8923 0.5999 16 6 0.0972 -4.8179 -0.3392 17 7 -0.5616 -6.0341 -0.4711 18 6 -1.7441 -6.1197 -1.3296 19 6 -1.8498 -7.5430 -1.8946 20 6 -1.8686 -8.5295 -0.7221 21 7 -0.6824 -8.3119 0.1076 22 6 -0.1043 -7.1046 0.1952 23 8 0.8731 -6.9758 0.9066 24 7 1.1444 -4.5555 -1.1081 25 6 1.7998 -3.4171 -1.0182 26 1 -0.3634 0.4334 0.9318 27 1 -0.3634 0.5903 -0.8413 28 1 -0.3634 -1.0237 -0.0906 29 1 0.3265 2.9620 1.9795 30 1 -0.0322 -1.9595 1.4459 31 1 -1.2055 -4.1174 1.2219 32 1 -2.6353 -5.8886 -0.7463 33 1 -1.6504 -5.4088 -2.1505 34 1 -0.9922 -7.7510 -2.5344 35 1 -2.7694 -7.6425 -2.4714 36 1 -1.8632 -9.5501 -1.1047 37 1 -2.7657 -8.3692 -0.1243 38 1 -0.3066 -9.0557 0.6038 39 1 2.6494 -3.2357 -1.6598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198462298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:39 Heat of formation + Delta-G solvation = -17.188653 kcal Electronic energy + Delta-G solvation = -24616.569703 eV Core-core repulsion = 20945.475992 eV Total energy + Delta-G solvation = -3671.093711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38268 -41.21556 -39.73951 -37.60315 -36.74384 -36.07980 -34.28082 -33.34227 -32.31834 -31.15483 -28.28548 -27.31125 -26.56391 -25.23213 -24.77093 -23.64355 -21.49141 -20.61079 -19.08933 -18.80988 -18.53448 -18.25956 -17.76914 -17.28082 -17.00508 -16.57064 -16.14322 -15.67323 -15.46731 -15.36441 -15.09452 -14.73509 -14.72790 -14.63108 -14.35993 -13.94930 -13.51999 -13.30815 -13.08431 -13.04340 -12.71567 -12.49291 -12.38457 -12.29323 -12.13789 -11.38164 -11.18126 -11.12185 -10.87337 -10.54076 -10.25707 -10.09342 -9.83951 -9.62630 -8.41532 -6.08119 -0.39038 0.11820 1.35183 1.40065 1.43044 1.53412 1.90229 1.95664 2.25566 2.53753 2.77407 2.90641 2.99779 3.45861 3.72863 3.76745 3.80307 3.87207 3.98874 4.01065 4.27075 4.43491 4.48056 4.54370 4.65272 4.72054 4.80895 4.84740 4.85899 5.01110 5.12600 5.22249 5.24965 5.36635 5.45891 5.78402 6.02897 6.05705 6.40095 6.62939 6.72681 7.06410 7.31508 7.43448 7.90985 8.57949 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.035441 B = 0.003142 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.865578 B = 8908.259675 C = 9147.128880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.435 5.435 3 C -0.362 4.362 4 H 0.071 0.929 5 C 0.012 3.988 6 N -0.874 5.874 7 Si 0.987 3.013 8 H -0.263 1.263 9 H -0.268 1.268 10 H -0.277 1.277 11 C 0.475 3.525 12 O -0.628 6.628 13 C -0.158 4.158 14 C -0.039 4.039 15 C -0.144 4.144 16 C 0.361 3.639 17 N -0.572 5.572 18 C 0.103 3.897 19 C -0.146 4.146 20 C 0.103 3.897 21 N -0.723 5.723 22 C 0.709 3.291 23 O -0.643 6.643 24 N -0.499 5.499 25 C 0.146 3.854 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.279 0.721 30 H 0.156 0.844 31 H 0.173 0.827 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.421 0.579 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 -18.273 -6.350 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.151 5.151 3 C -0.489 4.489 4 H 0.089 0.911 5 C -0.193 4.193 6 N -0.509 5.509 7 Si 0.809 3.191 8 H -0.188 1.188 9 H -0.192 1.192 10 H -0.202 1.202 11 C 0.264 3.736 12 O -0.517 6.517 13 C -0.163 4.163 14 C -0.066 4.066 15 C -0.166 4.166 16 C 0.133 3.867 17 N -0.307 5.307 18 C -0.017 4.017 19 C -0.184 4.184 20 C -0.019 4.019 21 N -0.380 5.380 22 C 0.410 3.590 23 O -0.525 6.525 24 N -0.210 5.210 25 C -0.013 4.013 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.157 0.843 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.260 0.740 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.159 -18.576 -6.543 25.475 hybrid contribution 0.719 1.335 0.656 1.652 sum -15.439 -17.241 -5.887 23.880 Atomic orbital electron populations 1.22205 0.79768 1.01737 1.03369 1.43641 1.06688 1.04094 1.60645 1.19449 1.04810 0.86421 1.38229 0.91123 1.26138 0.96675 1.03421 0.93107 1.69990 1.29647 1.32685 1.18602 0.85119 0.78454 0.76463 0.79054 1.18774 1.19230 1.20200 1.18478 0.87186 0.84159 0.83767 1.90599 1.15793 1.87567 1.57710 1.21082 0.98244 0.96532 1.00446 1.21623 0.91566 0.97029 0.96379 1.21904 1.02982 0.92929 0.98756 1.18143 0.89848 0.86797 0.91894 1.44034 1.30889 1.05799 1.50027 1.22165 0.85651 1.00013 0.93852 1.22303 1.05807 0.92236 0.98093 1.21941 0.86868 1.01686 0.91412 1.44939 1.33032 1.07971 1.52089 1.15617 0.81941 0.81600 0.79829 1.90979 1.30677 1.84672 1.46145 1.67314 1.07586 1.20166 1.25898 1.22577 0.96941 0.86501 0.95253 0.90234 0.93376 0.89752 0.91101 0.82658 0.80985 0.88155 0.89832 0.91799 0.84290 0.86737 0.89276 0.74014 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.05 8.67 127.77 1.11 4.16 16 2 N -0.43 -22.87 2.97 -662.56 -1.97 -24.84 16 3 C -0.36 -20.74 9.01 84.09 0.76 -19.98 16 4 H 0.07 4.34 7.69 -2.91 -0.02 4.32 16 5 C 0.01 0.63 5.00 84.95 0.42 1.05 16 6 N -0.87 -45.66 11.40 21.68 0.25 -45.41 16 7 Si 0.99 41.34 29.63 68.60 2.03 43.37 16 8 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 9 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 C 0.47 25.08 7.20 86.68 0.62 25.71 16 12 O -0.63 -38.72 16.84 -4.12 -0.07 -38.79 16 13 C -0.16 -6.66 5.09 -19.99 -0.10 -6.76 16 14 C -0.04 -1.36 7.39 22.47 0.17 -1.20 16 15 C -0.14 -4.21 9.95 22.21 0.22 -3.99 16 16 C 0.36 11.57 5.21 133.08 0.69 12.26 16 17 N -0.57 -14.36 2.90 -655.22 -1.90 -16.26 16 18 C 0.10 1.41 6.50 86.57 0.56 1.97 16 19 C -0.15 -1.07 6.21 30.84 0.19 -0.88 16 20 C 0.10 0.65 7.20 86.48 0.62 1.27 16 21 N -0.72 -11.99 5.59 -479.87 -2.68 -14.67 16 22 C 0.71 19.91 8.14 179.46 1.46 21.37 16 23 O -0.64 -25.68 16.94 -3.94 -0.07 -25.75 16 24 N -0.50 -18.56 10.39 -192.02 -1.99 -20.56 16 25 C 0.15 5.82 10.89 85.05 0.93 6.74 16 26 H 0.08 3.59 6.20 -2.39 -0.01 3.57 16 27 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.08 2.98 4.17 -2.39 -0.01 2.97 16 29 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 30 H 0.16 5.13 6.87 -2.91 -0.02 5.11 16 31 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 -0.01 8.14 -2.39 -0.02 -0.02 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.42 6.08 8.88 -92.71 -0.82 5.26 16 39 H 0.16 6.31 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -84.59 329.56 1.54 -83.05 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.28 Total: 18.11 kcal Atomic # 6 Polarization: 34.07 SS G_CDS: 7.66 Total: 41.73 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -8.29 Total: -121.73 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -0.14 Total: -64.53 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -84.59 1.54 -83.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198462298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.865 kcal (2) G-P(sol) polarization free energy of solvation -84.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds