Wall clock time and date at job start Fri Apr 10 2020 14:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 C 1.52997 * 109.47484 * 239.99936 * 2 1 3 5 5 O 1.45198 * 109.46810 * 119.99648 * 2 1 3 6 6 C 1.34656 * 117.00297 * 60.00202 * 5 2 1 7 7 O 1.21519 * 119.99397 * 0.02562 * 6 5 2 8 8 N 1.34768 * 120.00388 * 179.97438 * 6 5 2 9 9 C 1.40013 * 120.00233 * 185.16574 * 8 6 5 10 10 C 1.38415 * 119.93870 * 41.90586 * 9 8 6 11 11 C 1.38213 * 120.17522 * 180.02562 * 10 9 8 12 12 C 1.38349 * 119.92970 * 359.97438 * 11 10 9 13 13 C 1.38157 * 120.29612 * 0.02562 * 12 11 10 14 14 C 1.38660 * 120.51943 * 0.26158 * 13 12 11 15 15 N 1.39238 * 111.70732 * 180.18146 * 14 13 12 16 16 C 1.36803 * 124.92940 * 179.84719 * 15 14 13 17 17 H 1.07997 * 120.00322 * 17.02591 * 16 15 14 18 18 C 1.38768 * 119.99812 * 196.75634 * 16 15 14 19 19 N 1.31616 * 120.00162 * 0.27134 * 18 16 15 20 20 Si 1.86805 * 119.99776 * 180.27347 * 18 16 15 21 21 H 1.48497 * 109.46939 * 60.00012 * 20 18 16 22 22 H 1.48498 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47303 * 299.99842 * 20 18 16 24 24 C 1.46532 * 110.14031 * 359.58247 * 15 14 13 25 25 C 1.51235 * 130.98505 * 179.97438 * 13 12 11 26 26 H 1.08992 * 109.47064 * 300.00410 * 1 2 3 27 27 H 1.08998 * 109.46743 * 60.00359 * 1 2 3 28 28 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47597 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46780 * 299.99923 * 3 2 1 31 31 H 1.08995 * 109.47310 * 59.99282 * 3 2 1 32 32 H 1.09007 * 109.46849 * 300.00133 * 4 2 1 33 33 H 1.08996 * 109.47024 * 59.99403 * 4 2 1 34 34 H 1.09001 * 109.47681 * 180.02562 * 4 2 1 35 35 H 0.97004 * 119.99672 * 5.16827 * 8 6 5 36 36 H 1.08008 * 119.91470 * 359.97438 * 10 9 8 37 37 H 1.07994 * 120.04035 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.84776 * 180.02562 * 12 11 10 39 39 H 0.97003 * 119.99523 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.30415 * 119.16316 * 24 15 14 41 41 H 1.08995 * 110.30541 * 241.31501 * 24 15 14 42 42 H 1.09000 * 110.43472 * 61.27057 * 25 13 12 43 43 H 1.08996 * 110.53938 * 298.82382 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9724 1.3385 7 8 0.9515 -2.5098 0.5036 8 7 2.0679 -2.6657 2.4168 9 6 1.7832 -4.0325 2.5228 10 6 1.9065 -4.8518 1.4140 11 6 1.6262 -6.2016 1.5129 12 6 1.2218 -6.7357 2.7234 13 6 1.0960 -5.9256 3.8354 14 6 1.3674 -4.5684 3.7522 15 7 1.1861 -3.9309 4.9767 16 6 1.3814 -2.5956 5.2011 17 1 1.4281 -1.9092 4.3686 18 6 1.5140 -2.1223 6.4988 19 7 1.4571 -2.9587 7.5134 20 14 1.7730 -0.2979 6.8057 21 1 0.6203 0.4640 6.2618 22 1 1.8834 -0.0524 8.2661 23 1 3.0208 0.1449 6.1332 24 6 0.7496 -4.8967 5.9885 25 6 0.6794 -6.2455 5.2536 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1391 34 1 3.1301 -0.7216 -1.2490 35 1 2.5643 -2.2178 3.1196 36 1 2.2218 -4.4351 0.4687 37 1 1.7228 -6.8388 0.6463 38 1 1.0036 -7.7907 2.7993 39 1 1.5501 -2.6278 8.4205 40 1 1.4741 -4.9462 6.8015 41 1 -0.2332 -4.6238 6.3728 42 1 1.3708 -6.9592 5.7015 43 1 -0.3373 -6.6376 5.2743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274831449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:47 Heat of formation + Delta-G solvation = -34.887918 kcal Electronic energy + Delta-G solvation = -25923.476041 eV Core-core repulsion = 22355.155175 eV Total energy + Delta-G solvation = -3568.320866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51987 -39.40531 -37.11899 -35.59797 -34.35406 -33.64987 -32.59212 -30.29554 -28.06901 -27.89548 -27.32880 -27.25016 -24.84441 -23.01569 -21.52093 -20.77503 -20.34556 -19.30493 -18.14745 -17.33010 -16.33490 -15.76145 -15.68106 -15.38791 -14.70187 -14.56092 -14.42274 -14.15401 -14.07766 -13.58853 -13.18576 -12.88354 -12.43458 -12.22433 -11.97687 -11.84951 -11.82134 -11.76909 -11.69140 -11.50669 -11.27065 -11.15164 -11.14424 -10.99672 -10.72117 -10.55216 -10.42511 -10.18434 -10.10478 -9.57728 -9.51530 -9.14410 -8.77464 -7.43027 -6.64479 -6.40337 -3.82524 2.23073 2.55226 2.71134 3.09585 3.10386 3.11370 3.41737 3.91951 4.61885 4.68579 4.79671 4.83594 4.87173 5.00313 5.02047 5.51005 5.60412 5.64643 5.73278 5.74711 5.79618 5.84393 5.96364 5.97385 6.04097 6.14618 6.15369 6.21969 6.39661 6.41987 6.46476 6.62664 6.74209 6.88998 6.99751 7.16443 7.17182 7.21394 7.28287 7.54874 7.58224 7.60443 8.01420 8.14847 8.45782 8.96509 9.08422 9.56571 10.49594 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.006604 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.288186 B = 4238.622672 C = 6429.341326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.567 6.567 8 N -0.632 5.632 9 C 0.049 3.951 10 C -0.050 4.050 11 C -0.229 4.229 12 C -0.051 4.051 13 C -0.209 4.209 14 C 0.190 3.810 15 N -0.434 5.434 16 C -0.302 4.302 17 H 0.100 0.900 18 C 0.029 3.971 19 N -0.877 5.877 20 Si 0.927 3.073 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.269 1.269 24 C 0.134 3.866 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.415 0.585 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.272 0.728 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 2.893 -8.968 9.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.283 6.283 6 C 0.396 3.604 7 O -0.456 6.456 8 N -0.285 5.285 9 C -0.049 4.049 10 C -0.071 4.071 11 C -0.251 4.251 12 C -0.071 4.071 13 C -0.216 4.216 14 C 0.069 3.931 15 N -0.118 5.118 16 C -0.430 4.430 17 H 0.118 0.882 18 C -0.175 4.175 19 N -0.513 5.513 20 Si 0.753 3.247 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.194 1.194 24 C 0.011 3.989 25 C -0.122 4.122 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.819 3.049 -8.811 9.359 hybrid contribution 0.150 1.229 0.555 1.357 sum 0.969 4.277 -8.255 9.348 Atomic orbital electron populations 1.22509 0.94198 1.05287 1.02047 1.21959 0.94321 0.91353 0.82453 1.21846 1.02104 0.92937 1.02845 1.22506 1.01343 1.03732 0.96313 1.86304 1.71604 1.24270 1.46076 1.18183 0.78999 0.80096 0.83124 1.90853 1.40768 1.70286 1.43711 1.42195 1.57056 1.08209 1.21080 1.16441 1.14545 0.80405 0.93467 1.20359 0.97803 0.92844 0.96052 1.20123 1.13306 0.94510 0.97208 1.20026 0.97962 0.97597 0.91488 1.19476 1.13854 0.92615 0.95667 1.18314 0.96047 0.91700 0.87039 1.42844 1.57832 1.06423 1.04742 1.19558 1.48063 0.81649 0.93698 0.88220 1.25356 0.96617 1.00399 0.95135 1.69926 1.47499 1.34460 0.99384 0.85960 0.79395 0.81549 0.77799 1.19750 1.20519 1.19400 1.21958 1.00680 0.84584 0.91668 1.21113 1.00204 0.98483 0.92384 0.92238 0.91600 0.89127 0.91608 0.90476 0.91519 0.89166 0.91569 0.92378 0.74605 0.87142 0.87612 0.87934 0.91761 0.88377 0.92855 0.91483 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.37 37.16 0.31 -2.29 16 2 C 0.14 1.94 1.13 -90.62 -0.10 1.84 16 3 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 4 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 5 O -0.37 -6.52 9.94 -40.37 -0.40 -6.92 16 6 C 0.64 12.84 7.75 54.05 0.42 13.26 16 7 O -0.57 -11.90 10.16 -19.29 -0.20 -12.10 16 8 N -0.63 -13.23 4.14 -13.98 -0.06 -13.29 16 9 C 0.05 1.08 6.14 -83.24 -0.51 0.57 16 10 C -0.05 -1.02 8.64 -39.53 -0.34 -1.36 16 11 C -0.23 -4.32 10.05 -39.55 -0.40 -4.72 16 12 C -0.05 -0.97 10.03 -39.57 -0.40 -1.37 16 13 C -0.21 -4.41 6.23 -104.23 -0.65 -5.06 16 14 C 0.19 4.43 6.65 -83.52 -0.56 3.88 16 15 N -0.43 -10.69 3.17 -112.44 -0.36 -11.04 16 16 C -0.30 -7.60 9.19 -15.14 -0.14 -7.74 16 17 H 0.10 2.44 5.22 -52.49 -0.27 2.16 16 18 C 0.03 0.72 5.46 -17.45 -0.10 0.63 16 19 N -0.88 -22.20 10.47 55.49 0.58 -21.62 16 20 Si 0.93 19.39 29.55 -169.99 -5.02 14.37 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C 0.13 3.06 5.81 -3.63 -0.02 3.04 16 25 C -0.08 -1.63 6.94 -27.23 -0.19 -1.82 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.54 5.88 -51.93 -0.31 1.23 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.42 5.88 -51.92 -0.31 1.11 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.41 8.58 6.70 -40.82 -0.27 8.31 16 36 H 0.11 2.20 7.02 -52.48 -0.37 1.83 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.10 2.37 6.55 -51.93 -0.34 2.03 16 41 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -27.49 341.48 -8.41 -35.90 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.08 Total: 14.01 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.03 Total: -4.45 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.17 Total: -45.96 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.60 Total: -19.02 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.49 -8.41 -35.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274831449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.012 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds