Wall clock time and date at job start Fri Apr 10 2020 14:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47080 * 107.29463 * 3 2 1 5 5 C 1.33881 * 122.76104 * 90.02899 * 4 3 2 6 6 O 1.21222 * 125.39601 * 359.97438 * 5 4 3 7 7 C 1.51310 * 109.20632 * 179.97438 * 5 4 3 8 8 C 1.54228 * 103.55538 * 359.97438 * 7 5 4 9 9 H 1.09003 * 110.60671 * 118.68002 * 8 7 5 10 10 N 1.46899 * 110.60565 * 241.48354 * 8 7 5 11 11 C 1.46855 * 110.99766 * 179.97438 * 10 8 7 12 12 C 1.53040 * 109.52139 * 185.83953 * 11 10 8 13 13 C 1.53121 * 109.28128 * 300.82484 * 12 11 10 14 14 C 1.52998 * 109.52170 * 177.55771 * 13 12 11 15 15 C 1.50699 * 109.46700 * 174.99760 * 14 13 12 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.53116 * 109.15952 * 57.65504 * 13 12 11 24 24 C 1.46845 * 111.00616 * 304.21022 * 10 8 7 25 25 C 1.33873 * 122.76373 * 269.99968 * 4 3 2 26 26 O 1.21227 * 125.39936 * 0.04641 * 25 4 3 27 27 H 4.40638 * 5.51427 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46878 * 347.29681 * 3 2 1 29 29 H 1.09004 * 109.47007 * 227.29998 * 3 2 1 30 30 H 1.09004 * 110.59994 * 241.48024 * 7 5 4 31 31 H 1.08995 * 110.60824 * 118.51312 * 7 5 4 32 32 H 1.08996 * 109.45955 * 65.83213 * 11 10 8 33 33 H 1.08989 * 109.45462 * 305.85018 * 11 10 8 34 34 H 1.08999 * 109.50440 * 180.88238 * 12 11 10 35 35 H 1.09007 * 109.53544 * 60.78510 * 12 11 10 36 36 H 1.09003 * 109.51818 * 297.68521 * 13 12 11 37 37 H 1.09004 * 109.47139 * 55.00136 * 14 13 12 38 38 H 1.08997 * 109.47675 * 294.99736 * 14 13 12 39 39 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.50612 * 62.28773 * 23 13 12 41 41 H 1.08998 * 109.50169 * 182.41055 * 23 13 12 42 42 H 1.08995 * 109.46053 * 294.18163 * 24 10 8 43 43 H 1.09008 * 109.45431 * 54.15296 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4115 -1.3187 5 6 3.3756 1.6895 -1.6360 6 8 3.2249 2.6374 -0.8955 7 6 3.8663 1.7634 -3.0654 8 6 3.8672 0.2908 -3.5239 9 1 3.1868 0.1501 -4.3638 10 7 5.2254 -0.1378 -3.8835 11 6 5.2363 -1.5397 -4.3210 12 6 6.6802 -1.9936 -4.5472 13 6 7.3298 -1.1027 -5.6097 14 6 8.7919 -1.5127 -5.7964 15 6 9.3955 -0.7194 -6.9267 16 1 8.7964 0.0050 -7.4584 17 6 10.7128 -0.9185 -7.2820 18 7 11.2398 -0.2259 -8.2681 19 14 11.7490 -2.1719 -6.3630 20 1 11.6291 -3.4952 -7.0263 21 1 11.2715 -2.2762 -4.9607 22 1 13.1701 -1.7410 -6.3712 23 6 7.2621 0.3567 -5.1517 24 6 5.8015 0.7429 -4.9076 25 6 3.3760 -0.4602 -2.3056 26 8 3.2255 -1.6610 -2.2345 27 1 -1.0501 0.0001 0.0002 28 1 3.0097 -1.0017 0.2260 29 1 3.0090 0.6978 0.7553 30 1 4.8738 2.1775 -3.1041 31 1 3.1836 2.3549 -3.6753 32 1 4.6761 -1.6342 -5.2511 33 1 4.7756 -2.1627 -3.5545 34 1 6.6872 -3.0293 -4.8869 35 1 7.2381 -1.9129 -3.6141 36 1 6.7967 -1.2143 -6.5539 37 1 8.8441 -2.5760 -6.0304 38 1 9.3448 -1.3152 -4.8781 39 1 12.1664 -0.3661 -8.5183 40 1 7.8286 0.4750 -4.2280 41 1 7.6845 1.0003 -5.9233 42 1 5.2386 0.6381 -5.8351 43 1 5.7511 1.7772 -4.5671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491705778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:03 Heat of formation + Delta-G solvation = -4.383723 kcal Electronic energy + Delta-G solvation = -24947.431119 eV Core-core repulsion = 21380.433015 eV Total energy + Delta-G solvation = -3566.998105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31614 -39.18529 -38.53650 -36.27458 -35.48751 -33.83117 -32.48416 -31.28155 -30.54933 -28.43053 -27.44293 -25.84819 -23.70044 -23.11828 -21.83174 -20.60051 -20.25301 -19.15441 -18.76610 -17.71905 -17.26744 -16.79843 -16.66143 -15.66138 -15.33705 -14.80983 -14.61507 -14.42286 -14.30566 -14.09146 -13.89784 -13.65683 -13.46476 -13.28583 -12.99141 -12.62361 -12.16850 -11.97436 -11.87868 -11.45300 -11.33061 -11.07265 -10.80663 -10.69656 -10.68163 -10.55003 -10.35646 -10.32976 -10.12806 -9.74100 -9.62505 -9.28634 -9.00859 -8.52446 -8.46716 -6.03292 -4.00355 1.20099 1.73550 2.29661 2.38853 2.78413 3.31720 3.39616 3.43711 3.57236 3.76016 3.91829 3.95015 4.17550 4.46721 4.74941 4.78867 4.89244 5.01725 5.14184 5.18261 5.27637 5.30188 5.32074 5.43919 5.44732 5.57369 5.73149 5.82788 5.97770 6.15879 6.23544 6.35983 6.42057 6.50478 6.77895 6.85973 6.95744 6.96920 6.99811 7.10736 7.12274 7.29053 7.43851 7.48944 7.81846 8.55068 9.01497 9.60201 11.10008 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029966 B = 0.002988 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.167488 B = 9368.054902 C = 9734.860384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.214 4.214 3 C 0.211 3.789 4 N -0.570 5.570 5 C 0.537 3.463 6 O -0.480 6.480 7 C -0.156 4.156 8 C 0.048 3.952 9 H 0.095 0.905 10 N -0.519 5.519 11 C 0.046 3.954 12 C -0.113 4.113 13 C -0.074 4.074 14 C -0.009 4.009 15 C -0.514 4.514 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.265 1.265 22 H -0.289 1.289 23 C -0.100 4.100 24 C 0.051 3.949 25 C 0.544 3.456 26 O -0.469 6.469 27 H 0.222 0.778 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.010 0.990 38 H 0.016 0.984 39 H 0.262 0.738 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.801 2.017 13.736 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.215 4.215 3 C 0.091 3.909 4 N -0.313 5.313 5 C 0.326 3.674 6 O -0.351 6.351 7 C -0.195 4.195 8 C -0.064 4.064 9 H 0.113 0.887 10 N -0.246 5.246 11 C -0.081 4.081 12 C -0.150 4.150 13 C -0.093 4.093 14 C -0.046 4.046 15 C -0.552 4.552 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.190 1.190 22 H -0.215 1.215 23 C -0.138 4.138 24 C -0.076 4.076 25 C 0.332 3.668 26 O -0.338 6.338 27 H 0.239 0.761 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.484 1.922 14.512 24.371 hybrid contribution -0.087 -0.769 -0.309 0.834 sum -19.571 1.153 14.202 24.209 Atomic orbital electron populations 1.25015 0.95935 1.00248 0.97313 1.23105 0.94527 1.01157 1.02731 1.18486 0.84479 1.03944 0.83984 1.46766 1.59638 1.10326 1.14588 1.20815 0.74819 0.81391 0.90353 1.90779 1.49160 1.38763 1.56444 1.22738 1.06735 0.97116 0.92946 1.22338 0.94343 0.93570 0.96140 0.88740 1.62085 1.14577 1.04367 1.43561 1.22388 0.98788 0.87480 0.99397 1.21719 0.93727 0.99296 1.00303 1.21080 0.98291 0.93606 0.96328 1.19607 0.91564 0.96203 0.97254 1.21144 0.96420 1.22213 1.15461 0.90945 1.25034 0.97931 0.95818 0.94794 1.69914 1.14186 1.41507 1.28860 0.86810 0.79505 0.81965 0.81179 1.20446 1.18977 1.21536 1.21565 0.92452 0.97763 1.02017 1.22385 0.97487 0.95894 0.91804 1.20689 0.74781 0.86498 0.84825 1.90735 1.48216 1.12844 1.82001 0.76127 0.86410 0.86415 0.84514 0.85883 0.94640 0.89491 0.91782 0.91598 0.92255 0.97180 0.96540 0.92837 0.91709 0.89890 0.94398 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.21 -2.10 13.68 -37.12 -0.51 -2.61 16 3 C 0.21 1.91 6.03 -6.83 -0.04 1.87 16 4 N -0.57 -5.83 2.51 -118.47 -0.30 -6.13 16 5 C 0.54 5.52 8.08 -11.09 -0.09 5.43 16 6 O -0.48 -6.19 17.48 5.61 0.10 -6.09 16 7 C -0.16 -1.24 6.10 -26.94 -0.16 -1.40 16 8 C 0.05 0.47 2.81 -67.92 -0.19 0.28 16 9 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 10 N -0.52 -6.33 4.50 -226.94 -1.02 -7.35 16 11 C 0.05 0.63 5.31 -3.83 -0.02 0.61 16 12 C -0.11 -1.77 5.38 -26.65 -0.14 -1.91 16 13 C -0.07 -1.37 2.20 -90.50 -0.20 -1.57 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 15 C -0.51 -14.04 9.00 -34.44 -0.31 -14.35 16 16 H 0.07 2.10 7.32 -52.49 -0.38 1.72 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.48 13.96 55.43 0.77 -26.71 16 19 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.10 -1.66 5.15 -26.66 -0.14 -1.80 16 24 C 0.05 0.63 5.18 -3.84 -0.02 0.61 16 25 C 0.54 6.14 7.44 -11.09 -0.08 6.06 16 26 O -0.47 -6.44 15.30 5.60 0.09 -6.36 16 27 H 0.22 1.01 7.80 -54.09 -0.42 0.59 16 28 H 0.12 0.96 7.83 -51.93 -0.41 0.55 16 29 H 0.12 0.92 7.83 -51.93 -0.41 0.51 16 30 H 0.14 1.07 6.20 -51.93 -0.32 0.75 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.21 5.68 -51.93 -0.30 0.92 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.53 7.05 -51.93 -0.37 1.16 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.76 5.95 -51.92 -0.31 0.45 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -33.08 350.45 -7.51 -40.59 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.23 Total: -2.00 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.53 Total: -8.14 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.55 Total: -40.19 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.18 Total: -12.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.08 -7.51 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491705778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.210 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds