Wall clock time and date at job start Fri Apr 10 2020 14:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47080 * 107.29463 * 3 2 1 5 5 C 1.33881 * 122.76104 * 90.02899 * 4 3 2 6 6 O 1.21222 * 125.39601 * 359.97438 * 5 4 3 7 7 C 1.51310 * 109.20632 * 179.97438 * 5 4 3 8 8 C 1.54228 * 103.55538 * 359.97438 * 7 5 4 9 9 H 1.09003 * 110.60671 * 118.68002 * 8 7 5 10 10 N 1.46899 * 110.60565 * 241.48354 * 8 7 5 11 11 C 1.46855 * 110.99766 * 179.97438 * 10 8 7 12 12 C 1.53040 * 109.52139 * 185.83953 * 11 10 8 13 13 C 1.53121 * 109.28128 * 300.82484 * 12 11 10 14 14 C 1.52998 * 109.52170 * 177.55771 * 13 12 11 15 15 C 1.50699 * 109.46700 * 174.99760 * 14 13 12 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.53116 * 109.15952 * 57.65504 * 13 12 11 24 24 C 1.46845 * 111.00616 * 304.21022 * 10 8 7 25 25 C 1.33873 * 122.76373 * 269.99968 * 4 3 2 26 26 O 1.21227 * 125.39936 * 0.04641 * 25 4 3 27 27 H 4.40638 * 5.51427 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46878 * 347.29681 * 3 2 1 29 29 H 1.09004 * 109.47007 * 227.29998 * 3 2 1 30 30 H 1.09004 * 110.59994 * 241.48024 * 7 5 4 31 31 H 1.08995 * 110.60824 * 118.51312 * 7 5 4 32 32 H 1.08996 * 109.45955 * 65.83213 * 11 10 8 33 33 H 1.08989 * 109.45462 * 305.85018 * 11 10 8 34 34 H 1.08999 * 109.50440 * 180.88238 * 12 11 10 35 35 H 1.09007 * 109.53544 * 60.78510 * 12 11 10 36 36 H 1.09003 * 109.51818 * 297.68521 * 13 12 11 37 37 H 1.09004 * 109.47139 * 55.00136 * 14 13 12 38 38 H 1.08997 * 109.47675 * 294.99736 * 14 13 12 39 39 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.50612 * 62.28773 * 23 13 12 41 41 H 1.08998 * 109.50169 * 182.41055 * 23 13 12 42 42 H 1.08995 * 109.46053 * 294.18163 * 24 10 8 43 43 H 1.09008 * 109.45431 * 54.15296 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4115 -1.3187 5 6 3.3756 1.6895 -1.6360 6 8 3.2249 2.6374 -0.8955 7 6 3.8663 1.7634 -3.0654 8 6 3.8672 0.2908 -3.5239 9 1 3.1868 0.1501 -4.3638 10 7 5.2254 -0.1378 -3.8835 11 6 5.2363 -1.5397 -4.3210 12 6 6.6802 -1.9936 -4.5472 13 6 7.3298 -1.1027 -5.6097 14 6 8.7919 -1.5127 -5.7964 15 6 9.3955 -0.7194 -6.9267 16 1 8.7964 0.0050 -7.4584 17 6 10.7128 -0.9185 -7.2820 18 7 11.2398 -0.2259 -8.2681 19 14 11.7490 -2.1719 -6.3630 20 1 11.6291 -3.4952 -7.0263 21 1 11.2715 -2.2762 -4.9607 22 1 13.1701 -1.7410 -6.3712 23 6 7.2621 0.3567 -5.1517 24 6 5.8015 0.7429 -4.9076 25 6 3.3760 -0.4602 -2.3056 26 8 3.2255 -1.6610 -2.2345 27 1 -1.0501 0.0001 0.0002 28 1 3.0097 -1.0017 0.2260 29 1 3.0090 0.6978 0.7553 30 1 4.8738 2.1775 -3.1041 31 1 3.1836 2.3549 -3.6753 32 1 4.6761 -1.6342 -5.2511 33 1 4.7756 -2.1627 -3.5545 34 1 6.6872 -3.0293 -4.8869 35 1 7.2381 -1.9129 -3.6141 36 1 6.7967 -1.2143 -6.5539 37 1 8.8441 -2.5760 -6.0304 38 1 9.3448 -1.3152 -4.8781 39 1 12.1664 -0.3661 -8.5183 40 1 7.8286 0.4750 -4.2280 41 1 7.6845 1.0003 -5.9233 42 1 5.2386 0.6381 -5.8351 43 1 5.7511 1.7772 -4.5671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491705778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:03 Heat of formation + Delta-G solvation = -26.093765 kcal Electronic energy + Delta-G solvation = -24948.372537 eV Core-core repulsion = 21380.433015 eV Total energy + Delta-G solvation = -3567.939523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12942 -40.18752 -39.55851 -37.15926 -36.62768 -35.01497 -34.08344 -32.40683 -31.68169 -29.94642 -28.19219 -26.93229 -25.16835 -24.19832 -22.90329 -22.01001 -21.03626 -20.49862 -19.49814 -18.86159 -18.50364 -18.02323 -17.62662 -16.56456 -16.31702 -16.22950 -15.72104 -15.48096 -15.30667 -15.15792 -15.02716 -14.66983 -14.59940 -14.48403 -14.21540 -14.09586 -13.43106 -13.31590 -13.13566 -12.73516 -12.61615 -12.38162 -12.12065 -12.01561 -11.87877 -11.63821 -11.43541 -11.38024 -11.26035 -11.17690 -11.10355 -10.91537 -10.70114 -10.62818 -9.41816 -8.23838 -6.24915 0.36411 1.02239 1.36715 1.38842 1.50147 1.50364 1.73095 2.07616 2.39361 2.72241 2.97513 3.11989 3.19190 3.32514 3.41415 3.97668 4.04768 4.08985 4.12275 4.14841 4.20563 4.41134 4.43793 4.52693 4.56077 4.61595 4.75647 4.78460 4.84183 4.90302 5.03095 5.05622 5.15686 5.25121 5.37117 5.47350 5.54863 5.63754 5.75004 5.76739 5.98128 6.02305 6.17524 6.37079 6.48323 6.62869 6.82580 7.38910 8.92463 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029966 B = 0.002988 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.167488 B = 9368.054902 C = 9734.860384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.256 4.256 3 C 0.206 3.794 4 N -0.570 5.570 5 C 0.538 3.462 6 O -0.509 6.509 7 C -0.145 4.145 8 C 0.052 3.948 9 H 0.118 0.882 10 N -0.527 5.527 11 C 0.055 3.945 12 C -0.106 4.106 13 C -0.072 4.072 14 C -0.008 4.008 15 C -0.513 4.513 16 H 0.040 0.960 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.942 3.058 20 H -0.271 1.271 21 H -0.250 1.250 22 H -0.287 1.287 23 C -0.098 4.098 24 C 0.061 3.939 25 C 0.544 3.456 26 O -0.497 6.497 27 H 0.253 0.747 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.010 0.990 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.464 1.838 14.879 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.257 4.257 3 C 0.086 3.914 4 N -0.312 5.312 5 C 0.329 3.671 6 O -0.382 6.382 7 C -0.184 4.184 8 C -0.060 4.060 9 H 0.135 0.865 10 N -0.254 5.254 11 C -0.073 4.073 12 C -0.144 4.144 13 C -0.090 4.090 14 C -0.045 4.045 15 C -0.551 4.551 16 H 0.059 0.941 17 C -0.193 4.193 18 N -0.594 5.594 19 Si 0.767 3.233 20 H -0.196 1.196 21 H -0.173 1.173 22 H -0.213 1.213 23 C -0.136 4.136 24 C -0.065 4.065 25 C 0.333 3.667 26 O -0.368 6.368 27 H 0.269 0.731 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.167 1.744 15.669 26.393 hybrid contribution 0.354 -0.679 -0.670 1.018 sum -20.813 1.065 14.999 25.676 Atomic orbital electron populations 1.25881 0.96845 0.98696 0.95659 1.23477 0.95276 1.02671 1.04310 1.18597 0.84697 1.04336 0.83768 1.46839 1.59171 1.10371 1.14817 1.21191 0.74021 0.80841 0.91027 1.90771 1.50526 1.39503 1.57441 1.22821 1.07823 0.96198 0.91514 1.22406 0.93153 0.94267 0.96136 0.86488 1.61962 1.16500 1.03617 1.43292 1.22229 0.96900 0.88398 0.99725 1.21610 0.95054 0.98898 0.98808 1.20992 0.95384 0.95550 0.97106 1.19583 0.94377 0.95381 0.95157 1.21468 0.96215 1.21471 1.15982 0.94125 1.25936 0.99546 0.98067 0.95798 1.70060 1.14704 1.43710 1.30934 0.85773 0.77590 0.79395 0.80560 1.19603 1.17329 1.21342 1.21440 0.95599 0.95976 1.00559 1.22251 0.94413 0.97328 0.92558 1.20939 0.74203 0.86192 0.85349 1.90722 1.49534 1.14063 1.82529 0.73058 0.86124 0.85764 0.83886 0.82516 0.93975 0.89564 0.91460 0.92096 0.93180 0.97161 0.96740 0.92792 0.92402 0.92631 0.93617 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 19.25 74.32 1.43 -0.82 16 2 C -0.26 -4.75 13.68 31.13 0.43 -4.32 16 3 C 0.21 3.58 6.03 84.58 0.51 4.09 16 4 N -0.57 -10.76 2.51 -766.55 -1.93 -12.69 16 5 C 0.54 9.92 8.08 87.99 0.71 10.63 16 6 O -0.51 -12.36 17.48 -2.85 -0.05 -12.41 16 7 C -0.14 -1.77 6.10 30.46 0.19 -1.59 16 8 C 0.05 0.84 2.81 44.78 0.13 0.97 16 9 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 10 N -0.53 -11.43 4.50 -871.92 -3.93 -15.36 16 11 C 0.05 1.36 5.31 86.33 0.46 1.82 16 12 C -0.11 -3.17 5.38 30.65 0.16 -3.01 16 13 C -0.07 -2.60 2.20 -10.72 -0.02 -2.62 16 14 C -0.01 -0.35 3.52 29.85 0.11 -0.24 16 15 C -0.51 -28.62 9.00 25.60 0.23 -28.39 16 16 H 0.04 2.46 7.32 -2.91 -0.02 2.44 16 17 C 0.00 0.16 5.47 84.65 0.46 0.62 16 18 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 19 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 C -0.10 -3.18 5.15 30.64 0.16 -3.02 16 24 C 0.06 1.36 5.18 86.32 0.45 1.81 16 25 C 0.54 11.21 7.44 87.99 0.65 11.86 16 26 O -0.50 -12.99 15.30 -2.87 -0.04 -13.03 16 27 H 0.25 1.56 7.80 -4.41 -0.03 1.53 16 28 H 0.12 1.94 7.83 -2.39 -0.02 1.92 16 29 H 0.12 1.90 7.83 -2.38 -0.02 1.88 16 30 H 0.14 1.68 6.20 -2.38 -0.01 1.67 16 31 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 2.23 5.68 -2.39 -0.01 2.22 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 38 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 2.09 7.05 -2.39 -0.02 2.07 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.74 5.95 -2.38 -0.01 1.73 16 Total: -1.00 -73.20 350.45 3.23 -69.97 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.95 Total: 8.34 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 6.05 Total: -12.22 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -5.55 Total: -87.03 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.09 Total: -25.44 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -73.20 3.23 -69.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491705778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.871 kcal (2) G-P(sol) polarization free energy of solvation -73.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds