Wall clock time and date at job start Fri Apr 10 2020 14:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46706 * 141.20699 * 3 2 1 5 5 C 1.33875 * 122.76058 * 90.02540 * 4 3 2 6 6 O 1.21232 * 125.39809 * 359.97438 * 5 4 3 7 7 C 1.51308 * 109.20667 * 179.97438 * 5 4 3 8 8 C 1.54233 * 103.55694 * 359.97438 * 7 5 4 9 9 H 1.08995 * 110.60819 * 241.48257 * 8 7 5 10 10 N 1.46904 * 110.60671 * 118.66985 * 8 7 5 11 11 C 1.46842 * 110.99896 * 302.86490 * 10 8 7 12 12 C 1.53038 * 109.52300 * 185.83377 * 11 10 8 13 13 C 1.53113 * 109.27961 * 300.82570 * 12 11 10 14 14 C 1.53010 * 109.57508 * 177.58797 * 13 12 11 15 15 C 1.50704 * 109.46941 * 65.28221 * 14 13 12 16 16 H 1.07998 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99874 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46866 * 60.00261 * 19 17 15 21 21 H 1.48496 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47344 * 300.00478 * 19 17 15 23 23 C 1.53113 * 109.16452 * 57.65066 * 13 12 11 24 24 C 1.46847 * 110.99433 * 67.07370 * 10 8 7 25 25 C 1.33875 * 122.75926 * 269.73150 * 4 3 2 26 26 O 1.21218 * 125.40198 * 359.97438 * 25 4 3 27 27 H 4.40644 * 5.51526 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46760 * 261.20634 * 3 2 1 29 29 H 1.08992 * 109.47070 * 21.20809 * 3 2 1 30 30 H 1.08996 * 110.60920 * 118.51472 * 7 5 4 31 31 H 1.09003 * 110.61157 * 241.48707 * 7 5 4 32 32 H 1.09000 * 109.46505 * 305.85565 * 11 10 8 33 33 H 1.09007 * 109.46271 * 65.82475 * 11 10 8 34 34 H 1.08997 * 109.50773 * 180.87828 * 12 11 10 35 35 H 1.09007 * 109.53051 * 60.78253 * 12 11 10 36 36 H 1.09004 * 109.51988 * 297.74150 * 13 12 11 37 37 H 1.08994 * 109.47119 * 185.28581 * 14 13 12 38 38 H 1.08997 * 109.46753 * 305.28394 * 14 13 12 39 39 H 0.97001 * 119.99723 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.50493 * 182.40206 * 23 13 12 41 41 H 1.09009 * 109.53376 * 62.30489 * 23 13 12 42 42 H 1.08998 * 109.46554 * 294.17198 * 24 10 8 43 43 H 1.08994 * 109.46272 * 54.15954 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0775 -0.8654 5 6 3.3751 2.3151 -0.4157 6 8 3.2247 2.6886 0.7278 7 6 3.8654 3.1740 -1.5609 8 6 3.8662 2.2077 -2.7630 9 1 4.8739 2.0928 -3.1622 10 7 2.9488 2.6815 -3.8079 11 6 1.5875 2.8402 -3.2805 12 6 0.6338 3.1930 -4.4243 13 6 1.0989 4.4921 -5.0878 14 6 0.1850 4.8194 -6.2706 15 6 -1.2042 5.1132 -5.7656 16 1 -1.4141 5.0712 -4.7071 17 6 -2.2071 5.4356 -6.6551 18 7 -1.9515 5.4863 -7.9442 19 14 -3.9292 5.7991 -6.0294 20 1 -3.8847 6.9590 -5.1031 21 1 -4.8164 6.1156 -7.1774 22 1 -4.4557 4.6113 -5.3103 23 6 2.5362 4.3159 -5.5853 24 6 3.4348 3.9306 -4.4078 25 6 3.3802 0.9032 -2.1697 26 8 3.2358 -0.1346 -2.7791 27 1 -1.0502 -0.0001 0.0003 28 1 3.0092 0.1579 1.0156 29 1 3.0097 -0.9572 -0.3717 30 1 3.1825 4.0051 -1.7369 31 1 4.8730 3.5394 -1.3624 32 1 1.2674 1.9080 -2.8150 33 1 1.5762 3.6390 -2.5388 34 1 -0.3737 3.3260 -4.0302 35 1 0.6336 2.3885 -5.1598 36 1 1.0615 5.3051 -4.3627 37 1 0.5718 5.6911 -6.7982 38 1 0.1520 3.9681 -6.9505 39 1 -2.6572 5.7128 -8.5700 40 1 2.8879 5.2512 -6.0207 41 1 2.5671 3.5292 -6.3392 42 1 3.4147 4.7242 -3.6609 43 1 4.4562 3.7903 -4.7614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491705787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:07 Heat of formation + Delta-G solvation = -6.637206 kcal Electronic energy + Delta-G solvation = -25394.892258 eV Core-core repulsion = 21827.796435 eV Total energy + Delta-G solvation = -3567.095823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41047 -39.05792 -38.61026 -36.18721 -35.41257 -33.67869 -32.46700 -30.96674 -30.55951 -28.05198 -27.31898 -25.84084 -23.86257 -22.97118 -22.35658 -20.65822 -20.18296 -19.01882 -18.65295 -17.66420 -17.03724 -16.73965 -16.25498 -15.53648 -15.26899 -15.05131 -14.74157 -14.49974 -14.03962 -13.98896 -13.94564 -13.73205 -13.53782 -13.15886 -12.82535 -12.54190 -12.10457 -11.90888 -11.79665 -11.32968 -11.15448 -10.91290 -10.75998 -10.66496 -10.60207 -10.54073 -10.33839 -10.29099 -10.22161 -10.02155 -9.60935 -9.12961 -8.93146 -8.42806 -8.33096 -5.98648 -4.00379 1.23770 1.78384 2.38808 2.55099 2.88424 3.32832 3.37849 3.39742 3.53410 3.90674 3.98139 4.03444 4.14891 4.46309 4.63616 4.83385 4.90767 5.06507 5.11941 5.14376 5.22820 5.26792 5.36779 5.51020 5.52773 5.63121 5.70482 5.80690 5.99186 6.09832 6.28916 6.42727 6.45712 6.55781 6.84538 6.90530 7.01518 7.08692 7.10100 7.15665 7.29729 7.48942 7.67852 7.83907 8.01387 8.43912 9.05778 9.63267 11.12593 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003852 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.957293 B = 7266.306964 C = 8116.216690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.225 4.225 3 C 0.215 3.785 4 N -0.575 5.575 5 C 0.534 3.466 6 O -0.480 6.480 7 C -0.198 4.198 8 C 0.055 3.945 9 H 0.135 0.865 10 N -0.508 5.508 11 C 0.047 3.953 12 C -0.097 4.097 13 C -0.082 4.082 14 C 0.029 3.971 15 C -0.516 4.516 16 H 0.053 0.947 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.113 4.113 24 C 0.058 3.942 25 C 0.537 3.463 26 O -0.456 6.456 27 H 0.223 0.777 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 -7.939 14.212 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.226 4.226 3 C 0.095 3.905 4 N -0.319 5.319 5 C 0.323 3.677 6 O -0.351 6.351 7 C -0.240 4.240 8 C -0.057 4.057 9 H 0.152 0.848 10 N -0.233 5.233 11 C -0.081 4.081 12 C -0.135 4.135 13 C -0.101 4.101 14 C -0.008 4.008 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.150 4.150 24 C -0.069 4.069 25 C 0.324 3.676 26 O -0.323 6.323 27 H 0.240 0.760 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.842 -8.659 13.935 21.466 hybrid contribution -1.301 0.769 1.001 1.813 sum 12.540 -7.890 14.936 21.038 Atomic orbital electron populations 1.25097 0.96017 0.97676 0.98406 1.22982 0.94471 1.02780 1.02390 1.18442 0.84813 0.91124 0.96152 1.46872 1.59769 1.13105 1.12142 1.20796 0.75195 0.82013 0.89696 1.90776 1.49082 1.75448 1.19832 1.23324 1.06200 1.00678 0.93753 1.22585 1.00592 0.91062 0.91488 0.84775 1.62085 1.01386 1.32117 1.27687 1.22389 0.88131 0.99529 0.98013 1.21531 0.97453 0.98496 0.95997 1.21261 0.93508 0.95745 0.99587 1.19103 0.93052 0.96708 0.91959 1.21198 0.94605 1.46635 0.93040 0.92833 1.25001 0.98775 0.95685 0.94888 1.69950 1.33134 1.49037 1.01348 0.86726 0.84646 0.78766 0.78268 1.20339 1.21324 1.20321 1.21716 0.95686 1.01181 0.96452 1.22224 0.99165 0.88375 0.97123 1.20715 0.75458 0.90866 0.80598 1.90773 1.47067 1.30780 1.63684 0.76030 0.86671 0.86558 0.85649 0.85692 0.92017 0.94694 0.90616 0.91480 0.92881 0.96642 0.96422 0.93006 0.91564 0.91222 0.94473 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.23 -2.64 13.68 -37.12 -0.51 -3.15 16 3 C 0.21 2.09 6.03 -6.82 -0.04 2.05 16 4 N -0.57 -6.22 2.51 -118.46 -0.30 -6.52 16 5 C 0.53 5.85 8.08 -11.09 -0.09 5.76 16 6 O -0.48 -6.57 17.48 5.60 0.10 -6.47 16 7 C -0.20 -1.68 5.68 -26.94 -0.15 -1.84 16 8 C 0.06 0.55 3.20 -67.91 -0.22 0.33 16 9 H 0.13 0.99 8.12 -51.93 -0.42 0.57 16 10 N -0.51 -6.55 4.70 -226.93 -1.07 -7.61 16 11 C 0.05 0.69 4.79 -3.84 -0.02 0.67 16 12 C -0.10 -1.77 5.15 -26.65 -0.14 -1.91 16 13 C -0.08 -1.58 2.20 -90.50 -0.20 -1.78 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.52 -14.13 8.45 -34.44 -0.29 -14.42 16 16 H 0.05 1.42 7.08 -52.49 -0.37 1.05 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.11 -1.75 5.38 -26.65 -0.14 -1.90 16 24 C 0.06 0.69 5.14 -3.83 -0.02 0.67 16 25 C 0.54 6.41 6.07 -11.08 -0.07 6.34 16 26 O -0.46 -6.86 17.47 5.61 0.10 -6.76 16 27 H 0.22 1.73 7.80 -54.08 -0.42 1.31 16 28 H 0.12 0.93 7.83 -51.93 -0.41 0.52 16 29 H 0.12 0.97 7.82 -51.93 -0.41 0.56 16 30 H 0.13 1.17 5.31 -51.93 -0.28 0.89 16 31 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.95 6.87 -51.93 -0.36 0.60 16 33 H 0.03 0.49 6.41 -51.92 -0.33 0.16 16 34 H 0.08 1.49 7.06 -51.93 -0.37 1.12 16 35 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 42 H 0.04 0.41 6.99 -51.93 -0.36 0.05 16 43 H 0.07 0.73 8.11 -51.93 -0.42 0.30 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -33.44 354.00 -7.89 -41.34 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.24 Total: -1.71 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.54 Total: -8.16 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.63 Total: -40.04 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.20 Total: -13.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.44 -7.89 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491705787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.699 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds