Wall clock time and date at job start Fri Apr 10 2020 14:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46706 * 141.20699 * 3 2 1 5 5 C 1.33875 * 122.76058 * 90.02540 * 4 3 2 6 6 O 1.21232 * 125.39809 * 359.97438 * 5 4 3 7 7 C 1.51308 * 109.20667 * 179.97438 * 5 4 3 8 8 C 1.54233 * 103.55694 * 359.97438 * 7 5 4 9 9 H 1.08995 * 110.60819 * 241.48257 * 8 7 5 10 10 N 1.46904 * 110.60671 * 118.66985 * 8 7 5 11 11 C 1.46842 * 110.99896 * 302.86490 * 10 8 7 12 12 C 1.53038 * 109.52300 * 185.83377 * 11 10 8 13 13 C 1.53113 * 109.27961 * 300.82570 * 12 11 10 14 14 C 1.53010 * 109.57508 * 177.58797 * 13 12 11 15 15 C 1.50704 * 109.46941 * 65.28221 * 14 13 12 16 16 H 1.07998 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99874 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46866 * 60.00261 * 19 17 15 21 21 H 1.48496 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47344 * 300.00478 * 19 17 15 23 23 C 1.53113 * 109.16452 * 57.65066 * 13 12 11 24 24 C 1.46847 * 110.99433 * 67.07370 * 10 8 7 25 25 C 1.33875 * 122.75926 * 269.73150 * 4 3 2 26 26 O 1.21218 * 125.40198 * 359.97438 * 25 4 3 27 27 H 4.40644 * 5.51526 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46760 * 261.20634 * 3 2 1 29 29 H 1.08992 * 109.47070 * 21.20809 * 3 2 1 30 30 H 1.08996 * 110.60920 * 118.51472 * 7 5 4 31 31 H 1.09003 * 110.61157 * 241.48707 * 7 5 4 32 32 H 1.09000 * 109.46505 * 305.85565 * 11 10 8 33 33 H 1.09007 * 109.46271 * 65.82475 * 11 10 8 34 34 H 1.08997 * 109.50773 * 180.87828 * 12 11 10 35 35 H 1.09007 * 109.53051 * 60.78253 * 12 11 10 36 36 H 1.09004 * 109.51988 * 297.74150 * 13 12 11 37 37 H 1.08994 * 109.47119 * 185.28581 * 14 13 12 38 38 H 1.08997 * 109.46753 * 305.28394 * 14 13 12 39 39 H 0.97001 * 119.99723 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.50493 * 182.40206 * 23 13 12 41 41 H 1.09009 * 109.53376 * 62.30489 * 23 13 12 42 42 H 1.08998 * 109.46554 * 294.17198 * 24 10 8 43 43 H 1.08994 * 109.46272 * 54.15954 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0775 -0.8654 5 6 3.3751 2.3151 -0.4157 6 8 3.2247 2.6886 0.7278 7 6 3.8654 3.1740 -1.5609 8 6 3.8662 2.2077 -2.7630 9 1 4.8739 2.0928 -3.1622 10 7 2.9488 2.6815 -3.8079 11 6 1.5875 2.8402 -3.2805 12 6 0.6338 3.1930 -4.4243 13 6 1.0989 4.4921 -5.0878 14 6 0.1850 4.8194 -6.2706 15 6 -1.2042 5.1132 -5.7656 16 1 -1.4141 5.0712 -4.7071 17 6 -2.2071 5.4356 -6.6551 18 7 -1.9515 5.4863 -7.9442 19 14 -3.9292 5.7991 -6.0294 20 1 -3.8847 6.9590 -5.1031 21 1 -4.8164 6.1156 -7.1774 22 1 -4.4557 4.6113 -5.3103 23 6 2.5362 4.3159 -5.5853 24 6 3.4348 3.9306 -4.4078 25 6 3.3802 0.9032 -2.1697 26 8 3.2358 -0.1346 -2.7791 27 1 -1.0502 -0.0001 0.0003 28 1 3.0092 0.1579 1.0156 29 1 3.0097 -0.9572 -0.3717 30 1 3.1825 4.0051 -1.7369 31 1 4.8730 3.5394 -1.3624 32 1 1.2674 1.9080 -2.8150 33 1 1.5762 3.6390 -2.5388 34 1 -0.3737 3.3260 -4.0302 35 1 0.6336 2.3885 -5.1598 36 1 1.0615 5.3051 -4.3627 37 1 0.5718 5.6911 -6.7982 38 1 0.1520 3.9681 -6.9505 39 1 -2.6572 5.7128 -8.5700 40 1 2.8879 5.2512 -6.0207 41 1 2.5671 3.5292 -6.3392 42 1 3.4147 4.7242 -3.6609 43 1 4.4562 3.7903 -4.7614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491705787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:06 Heat of formation + Delta-G solvation = -28.812100 kcal Electronic energy + Delta-G solvation = -25395.853834 eV Core-core repulsion = 21827.796435 eV Total energy + Delta-G solvation = -3568.057398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.27616 -40.12954 -39.65281 -37.16521 -36.64127 -35.00429 -34.04753 -32.10513 -31.77518 -29.56820 -28.15371 -27.06260 -25.38721 -24.20967 -23.47693 -22.04654 -21.05208 -20.36844 -19.52884 -18.56386 -18.40098 -17.85090 -17.65086 -16.65697 -16.38590 -16.21683 -15.99522 -15.63876 -15.19598 -14.99217 -14.88014 -14.83886 -14.60446 -14.47883 -14.19962 -13.75823 -13.62499 -13.23750 -13.04564 -12.84480 -12.56310 -12.41103 -12.24944 -12.21921 -12.00232 -11.71682 -11.43872 -11.39267 -11.26787 -11.19980 -11.13473 -10.89590 -10.70058 -10.51011 -9.39143 -8.16567 -6.25659 0.35494 0.95874 1.39099 1.41105 1.48762 1.55116 1.69582 2.02688 2.41655 2.66110 3.06860 3.16753 3.20157 3.28459 3.35075 3.87731 3.95507 4.01435 4.12567 4.15183 4.17268 4.33883 4.41378 4.43334 4.56901 4.59510 4.65116 4.81123 4.86131 4.87255 4.93268 5.06555 5.15875 5.39347 5.43392 5.43722 5.59685 5.61817 5.81015 5.86625 5.94998 6.02973 6.17640 6.30942 6.45273 6.62235 6.90868 7.42614 8.94994 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003852 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.957293 B = 7266.306964 C = 8116.216690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.254 4.254 3 C 0.207 3.793 4 N -0.574 5.574 5 C 0.534 3.466 6 O -0.510 6.510 7 C -0.185 4.185 8 C 0.061 3.939 9 H 0.172 0.828 10 N -0.524 5.524 11 C 0.062 3.938 12 C -0.092 4.092 13 C -0.074 4.074 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.110 4.110 24 C 0.065 3.935 25 C 0.536 3.464 26 O -0.493 6.493 27 H 0.245 0.755 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.167 0.833 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.056 0.944 37 H -0.009 1.009 38 H -0.015 1.015 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.644 -7.275 15.926 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.255 4.255 3 C 0.088 3.912 4 N -0.317 5.317 5 C 0.325 3.675 6 O -0.383 6.383 7 C -0.226 4.226 8 C -0.050 4.050 9 H 0.189 0.811 10 N -0.250 5.250 11 C -0.066 4.066 12 C -0.130 4.130 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.147 4.147 24 C -0.061 4.061 25 C 0.325 3.675 26 O -0.363 6.363 27 H 0.262 0.738 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.185 0.815 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.009 0.991 38 H 0.003 0.997 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.411 -7.990 15.669 23.385 hybrid contribution -1.811 0.519 0.443 1.935 sum 13.600 -7.470 16.112 22.369 Atomic orbital electron populations 1.25852 0.97023 0.97163 0.97945 1.23617 0.95566 1.03357 1.02934 1.18674 0.84028 0.91552 0.96971 1.46943 1.59195 1.13514 1.12049 1.21241 0.74339 0.82061 0.89865 1.90770 1.50429 1.75863 1.21252 1.23382 1.08415 0.99455 0.91307 1.22720 1.01179 0.89814 0.91325 0.81051 1.61943 1.00864 1.32976 1.29170 1.22076 0.88832 0.99348 0.96305 1.21366 0.97592 0.97291 0.96722 1.21098 0.94859 0.96104 0.97226 1.19006 0.93711 0.94216 0.93468 1.21631 0.95895 1.45903 0.93349 0.92339 1.25902 1.03179 0.95616 0.95043 1.70089 1.34478 1.50269 1.02660 0.85645 0.79445 0.78994 0.77854 1.19145 1.21041 1.19551 1.21633 0.93972 1.01193 0.97949 1.22208 0.99595 0.88446 0.95826 1.21119 0.74565 0.91142 0.80709 1.90760 1.48757 1.32365 1.64451 0.73845 0.85181 0.85538 0.85743 0.81496 0.92971 0.93396 0.92870 0.93747 0.92559 0.99084 0.99673 0.92985 0.90880 0.92843 0.92370 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 19.25 74.32 1.43 -2.06 16 2 C -0.25 -5.86 13.68 31.13 0.43 -5.44 16 3 C 0.21 3.87 6.03 84.57 0.51 4.38 16 4 N -0.57 -11.40 2.51 -766.55 -1.93 -13.32 16 5 C 0.53 10.29 8.08 87.99 0.71 11.00 16 6 O -0.51 -12.92 17.48 -2.88 -0.05 -12.97 16 7 C -0.18 -2.31 5.68 30.46 0.17 -2.13 16 8 C 0.06 0.97 3.20 44.78 0.14 1.12 16 9 H 0.17 1.54 8.12 -2.39 -0.02 1.52 16 10 N -0.52 -12.01 4.70 -871.89 -4.09 -16.11 16 11 C 0.06 1.75 4.79 86.33 0.41 2.16 16 12 C -0.09 -3.40 5.15 30.64 0.16 -3.24 16 13 C -0.07 -2.86 2.20 -10.71 -0.02 -2.88 16 14 C 0.03 1.71 4.45 29.85 0.13 1.84 16 15 C -0.53 -29.65 8.45 25.60 0.22 -29.43 16 16 H 0.06 3.14 7.08 -2.91 -0.02 3.12 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 19 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C -0.11 -3.27 5.38 30.65 0.16 -3.11 16 24 C 0.07 1.30 5.14 86.33 0.44 1.75 16 25 C 0.54 11.72 6.07 87.99 0.53 12.26 16 26 O -0.49 -14.41 17.47 -2.84 -0.05 -14.46 16 27 H 0.25 3.60 7.80 -4.41 -0.03 3.57 16 28 H 0.13 1.97 7.83 -2.39 -0.02 1.95 16 29 H 0.13 2.03 7.82 -2.39 -0.02 2.02 16 30 H 0.12 1.73 5.31 -2.39 -0.01 1.72 16 31 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 1.58 6.87 -2.39 -0.02 1.56 16 33 H 0.05 1.23 6.41 -2.38 -0.02 1.22 16 34 H 0.05 2.15 7.06 -2.39 -0.02 2.14 16 35 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.06 0.97 6.99 -2.39 -0.02 0.96 16 43 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 Total: -1.00 -75.97 354.00 3.09 -72.87 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.01 Total: 7.69 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.89 Total: -13.33 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -5.73 Total: -86.27 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.10 Total: -27.43 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -75.97 3.09 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491705787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.063 kcal (2) G-P(sol) polarization free energy of solvation -75.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds