Wall clock time and date at job start Fri Apr 10 2020 14:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99469 * 2 1 4 4 C 1.46892 * 111.00151 * 123.95467 * 2 1 3 5 5 C 1.53000 * 115.55111 * 296.31157 * 4 2 1 6 6 N 1.46492 * 109.47599 * 274.51694 * 5 4 2 7 7 S 1.65600 * 120.00293 * 163.93082 * 6 5 4 8 8 O 1.42101 * 104.27512 * 308.92604 * 7 6 5 9 9 O 1.42099 * 104.27924 * 181.07552 * 7 6 5 10 10 C 1.81399 * 104.45052 * 65.00016 * 7 6 5 11 11 C 1.52994 * 109.46961 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.47351 * 299.99863 * 11 10 7 13 13 C 1.52997 * 109.47428 * 60.00060 * 11 10 7 14 14 C 1.50702 * 109.46864 * 180.02562 * 11 10 7 15 15 H 1.07993 * 120.00136 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99948 * 179.97438 * 14 11 10 17 17 N 1.31522 * 120.00190 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00039 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46939 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46944 * 120.00301 * 18 16 14 21 21 H 1.48497 * 109.47403 * 240.00080 * 18 16 14 22 22 C 1.53002 * 117.51941 * 82.01847 * 4 2 1 23 23 C 1.52999 * 59.99968 * 107.47893 * 22 4 2 24 24 H 1.09003 * 109.47191 * 301.73706 * 1 2 3 25 25 H 1.08997 * 109.47232 * 61.73393 * 1 2 3 26 26 H 1.08995 * 109.46688 * 181.73527 * 1 2 3 27 27 H 1.09004 * 109.46306 * 183.95530 * 3 2 1 28 28 H 1.08996 * 109.47418 * 303.95208 * 3 2 1 29 29 H 1.08996 * 109.47210 * 63.95606 * 3 2 1 30 30 H 1.09002 * 109.47230 * 154.51152 * 5 4 2 31 31 H 1.09005 * 109.46627 * 34.52218 * 5 4 2 32 32 H 0.97002 * 119.99643 * 343.93528 * 6 5 4 33 33 H 1.08999 * 109.46633 * 300.00272 * 10 7 6 34 34 H 1.09000 * 109.46833 * 59.99933 * 10 7 6 35 35 H 1.08996 * 109.46851 * 60.00313 * 12 11 10 36 36 H 1.08999 * 109.47068 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47032 * 300.00645 * 12 11 10 38 38 H 1.09005 * 109.47073 * 59.99998 * 13 11 10 39 39 H 1.08999 * 109.47390 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47200 * 299.99948 * 13 11 10 41 41 H 0.97000 * 119.99769 * 179.97438 * 17 16 14 42 42 H 1.08997 * 117.49635 * 214.97497 * 22 4 2 43 43 H 1.09002 * 117.49819 * 359.97438 * 22 4 2 44 44 H 1.08998 * 117.50122 * 252.50912 * 23 22 4 45 45 H 1.08996 * 117.49643 * 107.49274 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6608 -0.2062 2.5215 6 7 2.6516 0.8077 2.8910 7 16 2.3375 1.8591 4.1312 8 8 1.0574 2.3931 3.8222 9 8 3.4864 2.6938 4.1826 10 6 2.2491 0.8063 5.6058 11 6 1.9592 1.6718 6.8337 12 6 3.0780 2.7008 7.0081 13 6 0.6251 2.3963 6.6436 14 6 1.8864 0.7972 8.0588 15 1 2.0318 -0.2693 7.9703 16 6 1.6340 1.3586 9.2925 17 7 1.4564 2.6573 9.4002 18 14 1.5430 0.2744 10.8110 19 1 1.7761 -1.1402 10.4239 20 1 2.5812 0.6982 11.7847 21 1 0.2002 0.4035 11.4317 22 6 2.0730 -2.2869 0.9904 23 6 3.3530 -1.4493 0.9613 24 1 -0.3634 0.5406 0.8740 25 1 -0.3633 0.4866 -0.9051 26 1 -0.3632 -1.0272 0.0311 27 1 3.0827 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.6767 -1.0136 3.2536 31 1 0.6690 0.2456 2.5005 32 1 3.4916 0.8631 2.4091 33 1 1.4517 0.0736 5.4817 34 1 3.1994 0.2898 5.7409 35 1 3.1311 3.3334 6.1221 36 1 2.8717 3.3170 7.8831 37 1 4.0285 2.1846 7.1434 38 1 -0.1720 1.6632 6.5194 39 1 0.4184 3.0125 7.5186 40 1 0.6782 3.0289 5.7576 41 1 1.2785 3.0521 10.2682 42 1 1.8853 -2.8887 1.8796 43 1 1.7328 -2.7195 0.0495 44 1 3.8553 -1.3309 0.0012 45 1 4.0076 -1.5002 1.8313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601450304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:20 Heat of formation + Delta-G solvation = -41.015633 kcal Electronic energy + Delta-G solvation = -24782.145824 eV Core-core repulsion = 21349.003192 eV Total energy + Delta-G solvation = -3433.142632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43161 -36.56014 -36.30161 -35.34313 -34.63522 -33.97416 -31.68994 -27.72891 -26.72121 -26.41544 -25.74376 -25.24757 -24.07658 -22.51434 -19.80381 -19.35286 -18.75718 -17.38192 -16.67577 -16.05900 -15.92240 -15.39680 -15.04044 -14.77306 -14.73793 -14.41432 -14.07362 -13.29838 -13.25834 -13.00106 -12.83676 -12.54104 -12.36585 -12.11873 -12.05094 -11.78144 -11.67956 -11.57571 -11.46526 -11.14227 -11.10332 -10.94945 -10.74861 -10.64086 -10.38545 -10.30740 -10.17969 -10.09583 -9.69019 -9.67193 -9.32417 -8.72287 -8.47643 -8.42845 -6.05928 -4.18009 0.83028 3.09558 3.23095 3.31659 3.34039 3.59825 3.63983 4.25894 4.35441 4.40204 4.70079 4.74815 4.81313 4.97727 5.19474 5.22597 5.32290 5.41310 5.45306 5.47297 5.49247 5.62207 5.66449 5.68098 5.75924 5.84104 5.89038 5.92528 5.99907 6.34397 6.67215 6.76826 6.80170 6.87803 6.90494 6.99326 7.10350 7.28750 7.47577 7.65445 7.95374 8.06949 8.30285 8.80714 9.47623 10.95434 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.004096 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.554430 B = 6834.639930 C = 7265.757634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.507 5.507 3 C 0.018 3.982 4 C 0.018 3.982 5 C 0.127 3.873 6 N -1.127 6.127 7 S 2.592 3.408 8 O -0.965 6.965 9 O -0.964 6.964 10 C -0.581 4.581 11 C 0.081 3.919 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.883 5.883 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.150 4.150 23 C -0.156 4.156 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.412 0.588 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 -7.662 -16.389 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.229 5.229 3 C -0.130 4.130 4 C -0.074 4.074 5 C -0.001 4.001 6 N -0.884 5.884 7 S 2.690 3.310 8 O -0.955 6.955 9 O -0.955 6.955 10 C -0.715 4.715 11 C 0.079 3.921 12 C -0.221 4.221 13 C -0.221 4.221 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.188 4.188 23 C -0.193 4.193 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.245 0.755 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.725 -6.796 -16.737 18.079 hybrid contribution 0.039 -0.809 1.665 1.852 sum 0.764 -7.604 -15.072 16.899 Atomic orbital electron populations 1.22427 0.87067 1.02202 1.01265 1.62061 1.08076 1.14181 1.38610 1.22445 1.00703 0.88458 1.01387 1.21747 1.02353 0.94040 0.89294 1.21185 0.92530 0.91427 0.94945 1.55904 1.28186 1.51694 1.52644 1.05645 0.74324 0.75336 0.75656 1.93534 1.42555 1.76468 1.82959 1.93555 1.51090 1.64327 1.86501 1.30514 1.09727 1.14356 1.16894 1.17938 0.93078 0.91748 0.89321 1.22272 0.97701 0.99650 1.02498 1.22269 0.97668 1.00364 1.01791 1.20974 1.49140 0.93314 0.90669 0.92275 1.24945 0.94841 0.95090 0.98880 1.69815 1.48262 1.09807 1.24261 0.86479 0.77704 0.80604 0.82849 1.19846 1.20928 1.20932 1.23099 1.01127 0.90971 1.03652 1.23056 0.90254 1.02388 1.03634 0.94597 0.91247 0.91244 0.91429 0.91478 0.93986 0.91088 0.89889 0.75494 0.86595 0.86270 0.95419 0.88622 0.94467 0.94533 0.88649 0.95345 0.92783 0.88238 0.88003 0.88048 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.32 60.07 0.56 0.74 16 2 N -0.51 -5.39 5.09 -235.40 -1.20 -6.59 16 3 C 0.02 0.20 9.04 60.07 0.54 0.74 16 4 C 0.02 0.18 1.12 -131.60 -0.15 0.03 16 5 C 0.13 1.51 5.50 -4.05 -0.02 1.49 16 6 N -1.13 -15.06 4.50 -10.62 -0.05 -15.11 16 7 S 2.59 47.23 4.49 -107.50 -0.48 46.74 16 8 O -0.97 -19.95 15.10 -57.54 -0.87 -20.82 16 9 O -0.96 -20.09 15.70 -57.54 -0.90 -20.99 16 10 C -0.58 -11.17 5.01 37.15 0.19 -10.98 16 11 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 12 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 13 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 14 C -0.50 -13.09 8.01 -34.44 -0.28 -13.36 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 17 N -0.88 -24.04 9.35 55.43 0.52 -23.52 16 18 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.15 -1.25 10.10 -26.73 -0.27 -1.52 16 23 C -0.16 -1.35 9.70 -26.73 -0.26 -1.61 16 24 H 0.04 0.40 6.77 -51.93 -0.35 0.04 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.55 6.70 -51.93 -0.35 0.20 16 30 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 31 H 0.08 1.08 6.03 -51.93 -0.31 0.76 16 32 H 0.41 4.84 8.21 -34.47 -0.28 4.55 16 33 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 36 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 40 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 41 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -31.24 356.42 -9.42 -40.66 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.51 Total: 7.19 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 0.72 Total: -28.43 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.73 Total: -45.21 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.77 Total: -41.81 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 47.23 SS G_CDS: -0.48 Total: 46.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.24 -9.42 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601450304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.352 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds