Wall clock time and date at job start Fri Apr 10 2020 14:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99469 * 2 1 4 4 C 1.46892 * 111.00151 * 123.95467 * 2 1 3 5 5 C 1.53000 * 115.55111 * 296.31157 * 4 2 1 6 6 N 1.46492 * 109.47599 * 274.51694 * 5 4 2 7 7 S 1.65600 * 120.00293 * 163.93082 * 6 5 4 8 8 O 1.42101 * 104.27512 * 308.92604 * 7 6 5 9 9 O 1.42099 * 104.27924 * 181.07552 * 7 6 5 10 10 C 1.81399 * 104.45052 * 65.00016 * 7 6 5 11 11 C 1.52994 * 109.46961 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.47351 * 299.99863 * 11 10 7 13 13 C 1.52997 * 109.47428 * 60.00060 * 11 10 7 14 14 C 1.50702 * 109.46864 * 180.02562 * 11 10 7 15 15 H 1.07993 * 120.00136 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99948 * 179.97438 * 14 11 10 17 17 N 1.31522 * 120.00190 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00039 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46939 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46944 * 120.00301 * 18 16 14 21 21 H 1.48497 * 109.47403 * 240.00080 * 18 16 14 22 22 C 1.53002 * 117.51941 * 82.01847 * 4 2 1 23 23 C 1.52999 * 59.99968 * 107.47893 * 22 4 2 24 24 H 1.09003 * 109.47191 * 301.73706 * 1 2 3 25 25 H 1.08997 * 109.47232 * 61.73393 * 1 2 3 26 26 H 1.08995 * 109.46688 * 181.73527 * 1 2 3 27 27 H 1.09004 * 109.46306 * 183.95530 * 3 2 1 28 28 H 1.08996 * 109.47418 * 303.95208 * 3 2 1 29 29 H 1.08996 * 109.47210 * 63.95606 * 3 2 1 30 30 H 1.09002 * 109.47230 * 154.51152 * 5 4 2 31 31 H 1.09005 * 109.46627 * 34.52218 * 5 4 2 32 32 H 0.97002 * 119.99643 * 343.93528 * 6 5 4 33 33 H 1.08999 * 109.46633 * 300.00272 * 10 7 6 34 34 H 1.09000 * 109.46833 * 59.99933 * 10 7 6 35 35 H 1.08996 * 109.46851 * 60.00313 * 12 11 10 36 36 H 1.08999 * 109.47068 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47032 * 300.00645 * 12 11 10 38 38 H 1.09005 * 109.47073 * 59.99998 * 13 11 10 39 39 H 1.08999 * 109.47390 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47200 * 299.99948 * 13 11 10 41 41 H 0.97000 * 119.99769 * 179.97438 * 17 16 14 42 42 H 1.08997 * 117.49635 * 214.97497 * 22 4 2 43 43 H 1.09002 * 117.49819 * 359.97438 * 22 4 2 44 44 H 1.08998 * 117.50122 * 252.50912 * 23 22 4 45 45 H 1.08996 * 117.49643 * 107.49274 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6608 -0.2062 2.5215 6 7 2.6516 0.8077 2.8910 7 16 2.3375 1.8591 4.1312 8 8 1.0574 2.3931 3.8222 9 8 3.4864 2.6938 4.1826 10 6 2.2491 0.8063 5.6058 11 6 1.9592 1.6718 6.8337 12 6 3.0780 2.7008 7.0081 13 6 0.6251 2.3963 6.6436 14 6 1.8864 0.7972 8.0588 15 1 2.0318 -0.2693 7.9703 16 6 1.6340 1.3586 9.2925 17 7 1.4564 2.6573 9.4002 18 14 1.5430 0.2744 10.8110 19 1 1.7761 -1.1402 10.4239 20 1 2.5812 0.6982 11.7847 21 1 0.2002 0.4035 11.4317 22 6 2.0730 -2.2869 0.9904 23 6 3.3530 -1.4493 0.9613 24 1 -0.3634 0.5406 0.8740 25 1 -0.3633 0.4866 -0.9051 26 1 -0.3632 -1.0272 0.0311 27 1 3.0827 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.6767 -1.0136 3.2536 31 1 0.6690 0.2456 2.5005 32 1 3.4916 0.8631 2.4091 33 1 1.4517 0.0736 5.4817 34 1 3.1994 0.2898 5.7409 35 1 3.1311 3.3334 6.1221 36 1 2.8717 3.3170 7.8831 37 1 4.0285 2.1846 7.1434 38 1 -0.1720 1.6632 6.5194 39 1 0.4184 3.0125 7.5186 40 1 0.6782 3.0289 5.7576 41 1 1.2785 3.0521 10.2682 42 1 1.8853 -2.8887 1.8796 43 1 1.7328 -2.7195 0.0495 44 1 3.8553 -1.3309 0.0012 45 1 4.0076 -1.5002 1.8313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601450304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:19 Heat of formation + Delta-G solvation = -63.385608 kcal Electronic energy + Delta-G solvation = -24783.115858 eV Core-core repulsion = 21349.003192 eV Total energy + Delta-G solvation = -3434.112667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22074 -38.14744 -38.12257 -36.92438 -35.52240 -34.90581 -33.64306 -28.55882 -28.34625 -27.71579 -27.43185 -27.21618 -24.89140 -23.16150 -21.43635 -20.40590 -20.16716 -18.76729 -17.96735 -17.60923 -17.09147 -16.77503 -16.63864 -16.20904 -15.67615 -15.42282 -15.06360 -14.81429 -14.67554 -14.44967 -14.13420 -13.95550 -13.82096 -13.39560 -13.20915 -13.05686 -12.93766 -12.90902 -12.76375 -12.54530 -12.53916 -12.48458 -12.23740 -12.20943 -12.12704 -11.97748 -11.59014 -11.45219 -11.31296 -10.87046 -10.71636 -10.43362 -10.38602 -9.34755 -8.04093 -6.22831 -0.63652 1.42680 1.45821 1.55247 1.84991 2.43518 2.79707 2.86391 2.88689 3.18350 3.29774 3.63256 3.86006 3.99491 4.10269 4.16632 4.23170 4.37850 4.49082 4.56850 4.59308 4.64828 4.72065 4.82219 4.84326 4.87060 4.89254 4.91041 4.97229 5.02018 5.05397 5.06535 5.12921 5.36412 5.37723 5.48526 5.63722 5.95172 5.97741 6.06637 6.09877 6.13505 6.32578 6.82290 7.45773 8.96023 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.004096 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.554430 B = 6834.639930 C = 7265.757634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.506 5.506 3 C 0.017 3.983 4 C 0.000 4.000 5 C 0.120 3.880 6 N -1.108 6.108 7 S 2.612 3.388 8 O -0.993 6.993 9 O -0.993 6.993 10 C -0.584 4.584 11 C 0.068 3.932 12 C -0.160 4.160 13 C -0.159 4.159 14 C -0.515 4.515 15 H 0.064 0.936 16 C 0.017 3.983 17 N -0.909 5.909 18 Si 0.955 3.045 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.135 4.135 23 C -0.151 4.151 24 H 0.018 0.982 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.421 0.579 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -10.077 -17.421 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.229 5.229 3 C -0.131 4.131 4 C -0.092 4.092 5 C -0.008 4.008 6 N -0.869 5.869 7 S 2.710 3.290 8 O -0.982 6.982 9 O -0.983 6.983 10 C -0.717 4.717 11 C 0.066 3.934 12 C -0.218 4.218 13 C -0.217 4.217 14 C -0.555 4.555 15 H 0.083 0.917 16 C -0.182 4.182 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.173 4.173 23 C -0.188 4.188 24 H 0.037 0.963 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.258 0.742 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.172 -9.216 -17.771 20.053 hybrid contribution -0.107 -0.070 1.905 1.909 sum 1.065 -9.286 -15.866 18.415 Atomic orbital electron populations 1.22479 0.86818 1.02890 1.00891 1.62118 1.08357 1.13669 1.38717 1.22462 1.01265 0.88874 1.00527 1.21774 1.04120 0.95280 0.88059 1.21420 0.91313 0.91218 0.96835 1.55419 1.29075 1.51502 1.50944 1.04757 0.73155 0.75261 0.75850 1.93498 1.43926 1.77433 1.83376 1.93507 1.51910 1.65845 1.87072 1.30437 1.11594 1.14287 1.15378 1.17933 0.92263 0.92045 0.91143 1.22207 0.98284 0.99770 1.01518 1.22196 0.98481 1.00274 1.00731 1.21319 1.48756 0.93807 0.91575 0.91747 1.25690 0.94773 0.96145 1.01623 1.69958 1.48933 1.11189 1.24670 0.85552 0.77352 0.79448 0.79545 1.18827 1.21023 1.20996 1.23198 1.00122 0.89424 1.04572 1.23139 0.89978 1.01574 1.04149 0.96333 0.90411 0.89932 0.90721 0.90627 0.96402 0.89021 0.91313 0.74231 0.84550 0.84320 0.95069 0.91079 0.94051 0.94089 0.91139 0.94997 0.92955 0.86963 0.87335 0.87720 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.32 127.69 1.19 1.50 16 2 N -0.51 -9.85 5.09 -898.68 -4.58 -14.43 16 3 C 0.02 0.36 9.04 127.69 1.15 1.51 16 4 C 0.00 0.00 1.12 3.53 0.00 0.00 16 5 C 0.12 2.59 5.50 86.38 0.47 3.06 16 6 N -1.11 -27.78 4.50 -187.50 -0.84 -28.62 16 7 S 2.61 93.04 4.49 -56.49 -0.25 92.79 16 8 O -0.99 -40.94 15.10 -127.65 -1.93 -42.87 16 9 O -0.99 -40.93 15.70 -127.65 -2.00 -42.93 16 10 C -0.58 -21.51 5.01 71.98 0.36 -21.15 16 11 C 0.07 3.26 0.52 -52.93 -0.03 3.23 16 12 C -0.16 -7.95 7.77 71.98 0.56 -7.39 16 13 C -0.16 -7.88 7.78 71.98 0.56 -7.32 16 14 C -0.52 -26.50 8.01 25.60 0.21 -26.30 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 16 C 0.02 0.89 5.15 84.65 0.44 1.33 16 17 N -0.91 -50.20 9.35 21.45 0.20 -50.00 16 18 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 C -0.13 -1.78 10.10 30.59 0.31 -1.47 16 23 C -0.15 -2.15 9.70 30.59 0.30 -1.86 16 24 H 0.02 0.40 6.77 -2.39 -0.02 0.38 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.02 0.45 6.70 -2.39 -0.02 0.44 16 30 H 0.09 1.61 7.90 -2.39 -0.02 1.59 16 31 H 0.07 1.71 6.03 -2.38 -0.01 1.70 16 32 H 0.42 9.12 8.21 -96.74 -0.79 8.32 16 33 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 34 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 35 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 36 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 40 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 41 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 42 H 0.11 1.22 8.05 -2.39 -0.02 1.20 16 43 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -66.60 356.42 -1.68 -68.27 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.18 Total: 28.87 kcal Atomic # 6 Polarization: -60.36 SS G_CDS: 5.52 Total: -54.84 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -5.22 Total: -93.06 kcal Atomic # 8 Polarization: -81.87 SS G_CDS: -3.93 Total: -85.80 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 93.04 SS G_CDS: -0.25 Total: 92.79 kcal Total: -66.60 -1.68 -68.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601450304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.887 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds