Wall clock time and date at job start Fri Apr 10 2020 14:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47517 * 2 1 4 4 H 1.08994 * 109.47064 * 54.99578 * 3 2 1 5 5 C 1.53006 * 109.46617 * 295.00153 * 3 2 1 6 6 C 1.52998 * 109.47347 * 175.00015 * 3 2 1 7 7 S 1.81400 * 109.47009 * 184.99606 * 6 3 2 8 8 O 1.42102 * 110.53912 * 68.37600 * 7 6 3 9 9 O 1.42096 * 110.54365 * 291.62638 * 7 6 3 10 10 N 1.65597 * 104.44853 * 179.97438 * 7 6 3 11 11 C 1.47086 * 120.87859 * 90.00521 * 10 7 6 12 12 C 1.53246 * 108.51814 * 231.16177 * 11 10 7 13 13 N 1.46902 * 109.33711 * 306.16785 * 12 11 10 14 14 C 1.46902 * 110.99497 * 187.25382 * 13 12 11 15 15 C 1.50699 * 109.47117 * 65.70000 * 14 13 12 16 16 H 1.08000 * 119.99735 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99471 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99932 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47273 * 90.00319 * 19 17 15 21 21 H 1.48506 * 109.47030 * 210.00162 * 19 17 15 22 22 H 1.48498 * 109.47420 * 330.00031 * 19 17 15 23 23 C 1.46905 * 111.26950 * 63.11028 * 13 12 11 24 24 C 1.47077 * 120.88533 * 269.97607 * 10 7 6 25 25 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46981 * 300.00159 * 1 2 3 27 27 H 1.09003 * 109.46870 * 59.99925 * 1 2 3 28 28 H 1.09001 * 109.47440 * 239.99973 * 2 1 3 29 29 H 1.09002 * 109.47594 * 119.99905 * 2 1 3 30 30 H 1.08994 * 109.46934 * 299.99505 * 5 3 2 31 31 H 1.09000 * 109.47068 * 59.99706 * 5 3 2 32 32 H 1.09001 * 109.46958 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46821 * 65.00144 * 6 3 2 34 34 H 1.09000 * 109.47123 * 304.99675 * 6 3 2 35 35 H 1.08995 * 109.62590 * 350.86935 * 11 10 7 36 36 H 1.09001 * 109.62973 * 111.45255 * 11 10 7 37 37 H 1.08998 * 109.49282 * 66.12711 * 12 11 10 38 38 H 1.09001 * 109.48895 * 186.20865 * 12 11 10 39 39 H 1.09008 * 109.46656 * 185.70064 * 14 13 12 40 40 H 1.09002 * 109.47174 * 305.69787 * 14 13 12 41 41 H 0.97003 * 119.99505 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.49314 * 176.93241 * 23 13 12 43 43 H 1.09000 * 109.49217 * 56.84795 * 23 13 12 44 44 H 1.08997 * 109.63136 * 248.55025 * 24 10 7 45 45 H 1.09010 * 109.62363 * 9.13403 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 16 4.1573 3.1524 0.2743 8 8 3.7570 3.7126 1.5173 9 8 3.9598 3.8564 -0.9441 10 7 5.8022 3.0096 0.4021 11 6 6.6560 3.0177 -0.7955 12 6 7.5848 1.8001 -0.7394 13 7 8.3081 1.7986 0.5392 14 6 9.3330 0.7464 0.5628 15 6 10.3963 1.0578 -0.4588 16 1 10.3186 1.9484 -1.0646 17 6 11.4687 0.2061 -0.6192 18 7 11.5633 -0.8781 0.1191 19 14 12.7869 0.5925 -1.8849 20 1 13.8519 1.4141 -1.2556 21 1 13.3734 -0.6744 -2.3913 22 1 12.1837 1.3448 -3.0142 23 6 7.3851 1.6599 1.6735 24 6 6.4481 2.8718 1.7163 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3970 32 1 1.9982 3.1543 -1.3073 33 1 4.0029 0.9835 -0.7597 34 1 3.8571 0.8800 1.0113 35 1 6.0340 2.9630 -1.6889 36 1 7.2504 3.9311 -0.8152 37 1 6.9942 0.8879 -0.8243 38 1 8.2990 1.8493 -1.5614 39 1 9.7839 0.7007 1.5542 40 1 8.8735 -0.2137 0.3280 41 1 12.3176 -1.4775 0.0059 42 1 7.9544 1.6074 2.6015 43 1 6.7973 0.7497 1.5550 44 1 7.0226 3.7712 1.9380 45 1 5.6886 2.7205 2.4835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:34 Heat of formation + Delta-G solvation = -78.173292 kcal Electronic energy + Delta-G solvation = -24223.104866 eV Core-core repulsion = 20788.350957 eV Total energy + Delta-G solvation = -3434.753909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.39992 -37.40394 -37.12424 -35.94903 -34.41966 -32.34721 -31.07846 -30.80328 -27.97019 -27.66503 -25.11277 -24.13661 -23.33939 -21.81896 -20.63820 -19.97520 -18.65112 -17.65347 -16.59364 -16.41599 -16.15107 -15.36235 -15.12654 -14.74924 -14.46873 -14.38748 -14.14063 -13.81636 -13.75783 -13.52167 -13.37595 -12.69833 -12.47169 -12.39662 -12.18061 -12.04281 -12.02085 -11.84863 -11.77066 -11.57826 -11.27365 -11.19032 -11.07010 -10.94352 -10.86678 -10.79932 -10.65151 -10.56541 -10.27029 -9.87653 -9.33633 -8.81427 -8.48971 -7.34026 -6.08887 -4.10659 0.22256 2.62948 3.28797 3.35152 3.38115 3.75861 4.04918 4.21416 4.36981 4.44970 4.51006 4.71439 4.87532 4.88970 5.05296 5.14291 5.19518 5.26749 5.27702 5.37842 5.41965 5.49968 5.61077 5.63653 5.68952 5.70235 5.71254 5.75972 5.78582 5.99064 6.02459 6.06364 6.17226 6.29476 6.43835 6.47235 6.73145 7.20043 7.24553 7.72616 7.99814 8.10330 8.45901 8.96943 9.54153 11.01912 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.003475 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.386267 B = 8054.988848 C = 8406.081364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.079 4.079 4 H 0.082 0.918 5 C -0.182 4.182 6 C -0.630 4.630 7 S 2.607 3.393 8 O -0.960 6.960 9 O -0.954 6.954 10 N -0.998 5.998 11 C 0.125 3.875 12 C 0.050 3.950 13 N -0.533 5.533 14 C 0.193 3.807 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.040 3.960 24 C 0.128 3.872 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.097 0.903 39 H 0.031 0.969 40 H -0.009 1.009 41 H 0.262 0.738 42 H 0.081 0.919 43 H 0.025 0.975 44 H 0.079 0.921 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 2.926 0.196 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.099 4.099 4 H 0.100 0.900 5 C -0.239 4.239 6 C -0.758 4.758 7 S 2.702 3.298 8 O -0.950 6.950 9 O -0.944 6.944 10 N -0.837 5.837 11 C 0.000 4.000 12 C -0.080 4.080 13 N -0.258 5.258 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.091 4.091 24 C 0.002 3.998 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.575 4.037 0.280 19.989 hybrid contribution 0.680 -1.618 -0.675 1.881 sum -18.895 2.419 -0.395 19.053 Atomic orbital electron populations 1.21863 0.95539 1.01868 1.02162 1.21535 0.96011 0.94858 1.02679 1.20899 0.90400 0.99014 0.99622 0.89952 1.22355 1.02850 1.01930 0.96765 1.30806 1.05977 1.27186 1.11871 1.05096 0.72983 0.77512 0.74256 1.93574 1.81643 1.75430 1.44359 1.93565 1.84416 1.69642 1.46825 1.57718 1.23336 1.89246 1.13394 1.21675 0.92786 1.00465 0.85111 1.22367 0.95934 0.94705 0.95031 1.61991 1.12647 1.50991 1.00210 1.19736 0.88545 0.86783 0.98084 1.21153 1.05992 1.07961 1.19719 0.91741 1.24993 0.98194 0.94991 0.96406 1.69956 1.30986 1.12789 1.40047 0.86489 0.81787 0.77579 0.81496 1.20609 1.21360 1.19797 1.22428 0.94632 0.95246 0.96757 1.21575 0.95981 0.99900 0.82327 0.92525 0.92552 0.92242 0.91423 0.91554 0.91396 0.91121 0.90763 0.84885 0.85071 0.89759 0.90265 0.95918 0.88481 0.95046 0.99157 0.92882 0.90058 0.95719 0.90241 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.11 -0.90 5.40 -26.73 -0.14 -1.05 16 3 C -0.08 -0.73 2.39 -90.61 -0.22 -0.95 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.18 -1.69 8.64 37.16 0.32 -1.36 16 6 C -0.63 -6.23 5.62 37.16 0.21 -6.02 16 7 S 2.61 33.89 5.07 -107.50 -0.54 33.35 16 8 O -0.96 -14.73 16.79 -57.54 -0.97 -15.69 16 9 O -0.95 -14.25 14.54 -57.54 -0.84 -15.09 16 10 N -1.00 -14.02 3.26 -113.22 -0.37 -14.39 16 11 C 0.12 1.84 6.47 -3.59 -0.02 1.82 16 12 C 0.05 0.88 5.46 -3.70 -0.02 0.86 16 13 N -0.53 -10.72 4.62 -235.74 -1.09 -11.81 16 14 C 0.19 4.79 4.72 -4.98 -0.02 4.77 16 15 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 16 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 24 C 0.13 1.80 6.46 -3.60 -0.02 1.78 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 32 H 0.07 0.80 5.61 -51.93 -0.29 0.50 16 33 H 0.13 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.08 1.08 7.19 -51.93 -0.37 0.71 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 1.86 6.67 -51.93 -0.35 1.51 16 39 H 0.03 0.83 7.97 -51.92 -0.41 0.42 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.01 7.19 -51.92 -0.37 0.63 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -32.12 359.75 -10.54 -42.66 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.90 Total: -2.41 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.03 Total: -12.83 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.72 Total: -51.45 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.80 Total: -30.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 33.89 SS G_CDS: -0.54 Total: 33.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.12 -10.54 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.517 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds