Wall clock time and date at job start Fri Apr 10 2020 14:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47517 * 2 1 4 4 H 1.08994 * 109.47064 * 54.99578 * 3 2 1 5 5 C 1.53006 * 109.46617 * 295.00153 * 3 2 1 6 6 C 1.52998 * 109.47347 * 175.00015 * 3 2 1 7 7 S 1.81400 * 109.47009 * 184.99606 * 6 3 2 8 8 O 1.42102 * 110.53912 * 68.37600 * 7 6 3 9 9 O 1.42096 * 110.54365 * 291.62638 * 7 6 3 10 10 N 1.65597 * 104.44853 * 179.97438 * 7 6 3 11 11 C 1.47086 * 120.87859 * 90.00521 * 10 7 6 12 12 C 1.53246 * 108.51814 * 231.16177 * 11 10 7 13 13 N 1.46902 * 109.33711 * 306.16785 * 12 11 10 14 14 C 1.46902 * 110.99497 * 187.25382 * 13 12 11 15 15 C 1.50699 * 109.47117 * 65.70000 * 14 13 12 16 16 H 1.08000 * 119.99735 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99471 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99932 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47273 * 90.00319 * 19 17 15 21 21 H 1.48506 * 109.47030 * 210.00162 * 19 17 15 22 22 H 1.48498 * 109.47420 * 330.00031 * 19 17 15 23 23 C 1.46905 * 111.26950 * 63.11028 * 13 12 11 24 24 C 1.47077 * 120.88533 * 269.97607 * 10 7 6 25 25 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46981 * 300.00159 * 1 2 3 27 27 H 1.09003 * 109.46870 * 59.99925 * 1 2 3 28 28 H 1.09001 * 109.47440 * 239.99973 * 2 1 3 29 29 H 1.09002 * 109.47594 * 119.99905 * 2 1 3 30 30 H 1.08994 * 109.46934 * 299.99505 * 5 3 2 31 31 H 1.09000 * 109.47068 * 59.99706 * 5 3 2 32 32 H 1.09001 * 109.46958 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46821 * 65.00144 * 6 3 2 34 34 H 1.09000 * 109.47123 * 304.99675 * 6 3 2 35 35 H 1.08995 * 109.62590 * 350.86935 * 11 10 7 36 36 H 1.09001 * 109.62973 * 111.45255 * 11 10 7 37 37 H 1.08998 * 109.49282 * 66.12711 * 12 11 10 38 38 H 1.09001 * 109.48895 * 186.20865 * 12 11 10 39 39 H 1.09008 * 109.46656 * 185.70064 * 14 13 12 40 40 H 1.09002 * 109.47174 * 305.69787 * 14 13 12 41 41 H 0.97003 * 119.99505 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.49314 * 176.93241 * 23 13 12 43 43 H 1.09000 * 109.49217 * 56.84795 * 23 13 12 44 44 H 1.08997 * 109.63136 * 248.55025 * 24 10 7 45 45 H 1.09010 * 109.62363 * 9.13403 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 16 4.1573 3.1524 0.2743 8 8 3.7570 3.7126 1.5173 9 8 3.9598 3.8564 -0.9441 10 7 5.8022 3.0096 0.4021 11 6 6.6560 3.0177 -0.7955 12 6 7.5848 1.8001 -0.7394 13 7 8.3081 1.7986 0.5392 14 6 9.3330 0.7464 0.5628 15 6 10.3963 1.0578 -0.4588 16 1 10.3186 1.9484 -1.0646 17 6 11.4687 0.2061 -0.6192 18 7 11.5633 -0.8781 0.1191 19 14 12.7869 0.5925 -1.8849 20 1 13.8519 1.4141 -1.2556 21 1 13.3734 -0.6744 -2.3913 22 1 12.1837 1.3448 -3.0142 23 6 7.3851 1.6599 1.6735 24 6 6.4481 2.8718 1.7163 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3970 32 1 1.9982 3.1543 -1.3073 33 1 4.0029 0.9835 -0.7597 34 1 3.8571 0.8800 1.0113 35 1 6.0340 2.9630 -1.6889 36 1 7.2504 3.9311 -0.8152 37 1 6.9942 0.8879 -0.8243 38 1 8.2990 1.8493 -1.5614 39 1 9.7839 0.7007 1.5542 40 1 8.8735 -0.2137 0.3280 41 1 12.3176 -1.4775 0.0059 42 1 7.9544 1.6074 2.6015 43 1 6.7973 0.7497 1.5550 44 1 7.0226 3.7712 1.9380 45 1 5.6886 2.7205 2.4835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601535944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:34 Heat of formation + Delta-G solvation = -100.557321 kcal Electronic energy + Delta-G solvation = -24224.075510 eV Core-core repulsion = 20788.350957 eV Total energy + Delta-G solvation = -3435.724553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77978 -38.32335 -38.00515 -37.04697 -35.99489 -34.26360 -32.08975 -31.71615 -29.65488 -28.51548 -26.76492 -24.79117 -24.65415 -23.58350 -21.64444 -20.98047 -19.77941 -18.76565 -18.46750 -17.54682 -17.22785 -16.72424 -16.16534 -15.93058 -15.86397 -15.51895 -15.46611 -15.24876 -14.91008 -14.46631 -14.18610 -14.09166 -13.72529 -13.55884 -13.37916 -13.18731 -13.05982 -12.93987 -12.75266 -12.67632 -12.59076 -12.48404 -12.37644 -12.27536 -12.20913 -12.03438 -11.86901 -11.62681 -11.53358 -11.33672 -11.12277 -10.59831 -10.03417 -8.96640 -8.19093 -6.28403 -0.78782 1.43448 1.44394 1.55041 1.56950 2.41732 2.79573 3.07240 3.13894 3.28221 3.41174 3.65876 3.68695 3.85727 4.11959 4.19938 4.29870 4.35513 4.37385 4.40425 4.49228 4.53463 4.54299 4.64277 4.73773 4.76534 4.89040 4.99047 5.02967 5.05581 5.07887 5.10923 5.13692 5.18584 5.25307 5.29445 5.36865 5.47878 5.54663 5.67244 6.07190 6.34835 6.65198 6.88219 7.41528 8.91763 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.003475 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.386267 B = 8054.988848 C = 8406.081364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C -0.085 4.085 4 H 0.085 0.915 5 C -0.187 4.187 6 C -0.612 4.612 7 S 2.612 3.388 8 O -0.985 6.985 9 O -0.976 6.976 10 N -1.003 6.003 11 C 0.133 3.867 12 C 0.051 3.949 13 N -0.544 5.544 14 C 0.209 3.791 15 C -0.522 4.522 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.262 1.262 23 C 0.038 3.962 24 C 0.132 3.868 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.078 0.922 39 H 0.005 0.995 40 H -0.035 1.035 41 H 0.263 0.737 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.076 0.924 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.699 2.907 -0.487 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.103 0.897 5 C -0.244 4.244 6 C -0.744 4.744 7 S 2.710 3.290 8 O -0.976 6.976 9 O -0.967 6.967 10 N -0.840 5.840 11 C 0.007 3.993 12 C -0.079 4.079 13 N -0.269 5.269 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.187 1.187 23 C -0.092 4.092 24 C 0.007 3.993 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.023 0.977 40 H -0.017 1.017 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.817 4.077 -0.398 21.216 hybrid contribution 0.968 -1.643 -0.434 1.956 sum -19.849 2.434 -0.832 20.015 Atomic orbital electron populations 1.21884 0.94761 1.02461 1.02488 1.21547 0.96740 0.93745 1.03023 1.21021 0.89656 1.00064 0.99766 0.89678 1.22412 1.04042 1.00932 0.97038 1.30654 1.06631 1.23673 1.13466 1.04905 0.72253 0.78620 0.73238 1.93538 1.81721 1.77022 1.45303 1.93537 1.84435 1.71385 1.47345 1.57718 1.23767 1.89583 1.12966 1.21556 0.92711 0.98591 0.86407 1.22364 0.95861 0.96495 0.93198 1.61881 1.13618 1.48939 1.02478 1.19369 0.89412 0.86978 0.95992 1.21487 1.06646 1.07864 1.20015 0.91679 1.25866 1.00505 0.94780 0.98377 1.70079 1.31862 1.13843 1.41720 0.85428 0.78833 0.77476 0.79157 1.20197 1.21011 1.18660 1.22522 0.94476 0.96911 0.95274 1.21549 0.96162 0.98478 0.83147 0.91836 0.92368 0.91845 0.91141 0.91192 0.90883 0.89549 0.92437 0.83509 0.83349 0.87538 0.90758 0.95306 0.90338 0.97654 1.01734 0.92773 0.90131 0.94813 0.90571 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.67 71.98 0.70 -1.11 16 2 C -0.11 -1.49 5.40 30.59 0.17 -1.32 16 3 C -0.08 -1.36 2.39 -10.79 -0.03 -1.39 16 4 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.19 -3.09 8.64 71.98 0.62 -2.47 16 6 C -0.61 -10.50 5.62 71.98 0.40 -10.09 16 7 S 2.61 63.51 5.07 -56.49 -0.29 63.23 16 8 O -0.99 -28.81 16.79 -127.65 -2.14 -30.95 16 9 O -0.98 -27.93 14.54 -127.65 -1.86 -29.78 16 10 N -1.00 -26.61 3.26 -512.13 -1.67 -28.28 16 11 C 0.13 3.76 6.47 86.35 0.56 4.32 16 12 C 0.05 1.77 5.46 86.39 0.47 2.24 16 13 N -0.54 -21.98 4.62 -899.76 -4.16 -26.13 16 14 C 0.21 10.61 4.72 85.56 0.40 11.01 16 15 C -0.52 -28.46 8.41 25.60 0.22 -28.25 16 16 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 19 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 C 0.04 1.22 5.62 86.38 0.49 1.71 16 24 C 0.13 3.54 6.46 86.35 0.56 4.10 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.06 0.66 6.56 -2.39 -0.02 0.65 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.12 6.56 -2.39 -0.02 1.10 16 32 H 0.06 1.16 5.61 -2.39 -0.01 1.14 16 33 H 0.15 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 2.55 7.19 -2.39 -0.02 2.53 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.08 3.02 6.67 -2.39 -0.02 3.00 16 39 H 0.01 0.30 7.97 -2.38 -0.02 0.28 16 40 H -0.04 -1.92 8.12 -2.39 -0.02 -1.94 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.08 2.58 7.99 -2.39 -0.02 2.56 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.11 2.38 7.19 -2.38 -0.02 2.37 16 Total: -1.00 -68.95 359.75 -1.84 -70.80 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.94 Total: 11.13 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 5.02 Total: -20.63 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -5.54 Total: -109.05 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -4.00 Total: -60.73 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 63.51 SS G_CDS: -0.29 Total: 63.23 kcal Total: -68.95 -1.84 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.762 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds