Wall clock time and date at job start Fri Apr 10 2020 14:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46965 * 2 1 4 4 H 1.09001 * 109.46993 * 305.00170 * 3 2 1 5 5 C 1.53004 * 109.47166 * 64.99851 * 3 2 1 6 6 C 1.52999 * 109.47334 * 185.00075 * 3 2 1 7 7 S 1.81398 * 109.47113 * 175.00097 * 6 3 2 8 8 O 1.42096 * 110.54327 * 291.62448 * 7 6 3 9 9 O 1.42103 * 110.54443 * 68.37365 * 7 6 3 10 10 N 1.65600 * 104.44995 * 179.97438 * 7 6 3 11 11 C 1.46499 * 120.00150 * 65.00019 * 10 7 6 12 12 C 1.53046 * 109.45844 * 265.03051 * 11 10 7 13 13 C 1.53192 * 109.31317 * 178.60198 * 12 11 10 14 14 N 1.46922 * 108.76525 * 54.65061 * 13 12 11 15 15 C 1.36943 * 120.62924 * 126.36371 * 14 13 12 16 16 H 1.07997 * 119.99691 * 331.86512 * 15 14 13 17 17 C 1.38810 * 119.99844 * 151.85695 * 15 14 13 18 18 N 1.31614 * 120.00206 * 343.07129 * 17 15 14 19 19 Si 1.86805 * 119.99859 * 163.06891 * 17 15 14 20 20 H 1.48503 * 109.46861 * 90.00023 * 19 17 15 21 21 H 1.48493 * 109.46999 * 210.00637 * 19 17 15 22 22 H 1.48504 * 109.46924 * 330.00371 * 19 17 15 23 23 C 1.46927 * 118.74082 * 306.38558 * 14 13 12 24 24 C 1.53032 * 109.46095 * 144.97635 * 11 10 7 25 25 H 1.08998 * 109.47361 * 299.99749 * 1 2 3 26 26 H 1.08999 * 109.47336 * 60.00227 * 1 2 3 27 27 H 1.08998 * 109.46477 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47361 * 240.00251 * 2 1 3 29 29 H 1.08999 * 109.47336 * 119.99773 * 2 1 3 30 30 H 1.09001 * 109.46904 * 60.00265 * 5 3 2 31 31 H 1.08994 * 109.47048 * 300.00377 * 5 3 2 32 32 H 1.09003 * 109.47335 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46872 * 294.99634 * 6 3 2 34 34 H 1.08997 * 109.47213 * 55.00223 * 6 3 2 35 35 H 0.97004 * 120.00150 * 244.99858 * 10 7 6 36 36 H 1.08995 * 109.45811 * 24.99663 * 11 10 7 37 37 H 1.09002 * 109.49517 * 298.56151 * 12 11 10 38 38 H 1.09001 * 109.50117 * 58.65649 * 12 11 10 39 39 H 1.09003 * 109.59497 * 294.86443 * 13 12 11 40 40 H 1.09002 * 109.70234 * 174.50638 * 13 12 11 41 41 H 0.97008 * 120.00355 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.58580 * 293.82207 * 23 14 13 43 43 H 1.09001 * 109.70398 * 173.46895 * 23 14 13 44 44 H 1.08999 * 109.50087 * 301.33170 * 24 11 10 45 45 H 1.08996 * 109.50175 * 61.40434 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4445 -0.1257 7 16 4.1571 3.1526 -0.2744 8 8 3.7568 3.7128 -1.5174 9 8 3.9595 3.8567 0.9440 10 7 5.8021 3.0100 -0.4009 11 6 6.3924 2.3466 -1.5660 12 6 6.6559 0.8756 -1.2360 13 6 7.2407 0.1769 -2.4676 14 7 8.4292 0.9178 -2.9115 15 6 9.6277 0.2773 -3.0811 16 1 9.8566 -0.6029 -2.4987 17 6 10.5480 0.7592 -4.0017 18 7 10.1645 1.6043 -4.9349 19 14 12.3309 0.2084 -3.9159 20 1 12.5130 -1.0101 -4.7450 21 1 13.2087 1.2913 -4.4277 22 1 12.6883 -0.0939 -2.5065 23 6 8.3077 2.3592 -3.1694 24 6 7.7107 3.0333 -1.9301 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0698 1.5876 2.1492 31 1 0.5489 2.1252 1.3969 32 1 1.9989 3.1542 1.3076 33 1 4.0029 0.9838 0.7597 34 1 3.8571 0.8802 -1.0113 35 1 6.3748 3.3658 0.2966 36 1 5.7041 2.4120 -2.4085 37 1 7.3636 0.8093 -0.4096 38 1 5.7203 0.3927 -0.9539 39 1 6.4992 0.1631 -3.2665 40 1 7.5213 -0.8448 -2.2118 41 1 10.8078 1.9415 -5.5781 42 1 7.6533 2.5232 -4.0255 43 1 9.2919 2.7798 -3.3759 44 1 7.5260 4.0863 -2.1422 45 1 8.4082 2.9468 -1.0969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609597426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:37 Heat of formation + Delta-G solvation = -74.631068 kcal Electronic energy + Delta-G solvation = -24257.960734 eV Core-core repulsion = 20823.360428 eV Total energy + Delta-G solvation = -3434.600307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.10846 -37.37129 -36.97298 -35.89480 -34.65182 -31.92882 -31.08336 -30.11158 -29.15265 -27.73559 -24.88277 -24.13710 -22.26427 -21.97445 -20.50370 -19.68675 -19.05062 -17.62774 -16.98616 -16.43122 -16.04230 -15.49015 -14.96053 -14.90747 -14.61752 -13.95163 -13.71609 -13.64419 -13.42121 -13.23160 -13.06303 -12.87502 -12.53797 -12.35909 -12.03645 -11.97641 -11.88146 -11.78888 -11.60550 -11.44828 -11.14841 -11.12730 -10.93140 -10.90175 -10.76546 -10.70530 -10.40399 -10.29837 -10.16127 -9.84242 -9.60600 -9.07297 -8.50481 -6.73855 -5.83708 -3.26614 0.29563 2.79221 3.34729 3.42228 3.44036 3.73512 4.13845 4.26259 4.45490 4.52058 4.54360 4.93148 5.05008 5.09478 5.16647 5.21744 5.27231 5.30411 5.39262 5.41349 5.48937 5.61220 5.65439 5.70048 5.72110 5.74967 5.79084 6.01220 6.02704 6.08539 6.18478 6.29551 6.45308 6.57445 6.66139 6.72802 6.86193 7.14035 7.30711 7.60530 7.75191 8.39935 9.15903 9.79030 10.35217 11.24989 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.003478 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.582689 B = 8049.239147 C = 8643.703442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.084 0.916 5 C -0.181 4.181 6 C -0.629 4.629 7 S 2.607 3.393 8 O -0.958 6.958 9 O -0.966 6.966 10 N -1.114 6.114 11 C 0.150 3.850 12 C -0.155 4.155 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.256 4.256 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.171 3.829 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.414 0.586 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -0.939 11.197 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.102 0.898 5 C -0.239 4.239 6 C -0.758 4.758 7 S 2.700 3.300 8 O -0.948 6.948 9 O -0.956 6.956 10 N -0.873 5.873 11 C 0.044 3.956 12 C -0.196 4.196 13 C 0.018 3.982 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.044 3.956 24 C -0.182 4.182 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.140 -0.119 10.899 19.475 hybrid contribution 1.396 -0.899 0.313 1.690 sum -14.744 -1.019 11.212 18.551 Atomic orbital electron populations 1.21864 0.95590 1.01846 1.02160 1.21530 0.95987 0.94829 1.02693 1.20907 0.90426 0.99057 0.99612 0.89809 1.22352 1.02839 1.01899 0.96769 1.30843 1.06048 1.26835 1.12069 1.04993 0.73518 0.77210 0.74275 1.93606 1.81833 1.74801 1.44511 1.93562 1.84683 1.70450 1.46883 1.55713 1.25141 1.74062 1.32335 1.20937 0.97010 0.91951 0.85661 1.22699 1.00292 0.95132 1.01475 1.20878 0.89850 0.94946 0.92524 1.44075 1.05484 1.03430 1.78445 1.19156 0.92163 1.11198 1.16025 0.91665 1.25057 0.99284 0.99987 0.95192 1.70020 1.33320 1.35138 1.16037 0.86308 0.84996 0.77789 0.77718 1.21378 1.21534 1.20493 1.20813 1.00877 0.83290 0.90637 1.22482 0.94689 0.98917 1.02111 0.92329 0.92491 0.92546 0.91365 0.91514 0.91523 0.91138 0.90816 0.84766 0.84513 0.75159 0.89685 0.91312 0.92966 0.96206 0.92351 0.93518 0.95912 0.88969 0.92340 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.11 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.08 -0.74 2.39 -90.62 -0.22 -0.95 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.18 -1.65 8.64 37.16 0.32 -1.32 16 6 C -0.63 -6.08 4.63 37.16 0.17 -5.90 16 7 S 2.61 33.84 5.09 -107.50 -0.55 33.30 16 8 O -0.96 -15.91 17.39 -57.54 -1.00 -16.92 16 9 O -0.97 -14.16 15.82 -57.54 -0.91 -15.07 16 10 N -1.11 -14.68 5.36 -4.86 -0.03 -14.70 16 11 C 0.15 2.37 2.65 -67.89 -0.18 2.19 16 12 C -0.15 -2.37 5.65 -26.61 -0.15 -2.53 16 13 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 14 N -0.59 -14.12 2.99 -172.32 -0.52 -14.64 16 15 C -0.26 -6.77 9.58 -15.06 -0.14 -6.92 16 16 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 17 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -25.53 11.19 55.49 0.62 -24.91 16 19 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 24 C -0.14 -2.56 5.61 -26.61 -0.15 -2.71 16 25 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.53 6.56 -51.93 -0.34 0.18 16 32 H 0.07 0.78 5.61 -51.93 -0.29 0.49 16 33 H 0.13 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.14 1.23 6.80 -51.93 -0.35 0.88 16 35 H 0.41 4.86 8.80 -34.47 -0.30 4.56 16 36 H 0.09 1.40 7.48 -51.93 -0.39 1.01 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.63 5.76 -51.93 -0.30 0.33 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -32.15 355.19 -9.98 -42.14 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.67 Total: 2.55 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.26 Total: -13.22 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.08 Total: -54.25 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.91 Total: -31.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 33.84 SS G_CDS: -0.55 Total: 33.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.15 -9.98 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609597426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.495 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds