Wall clock time and date at job start Fri Apr 10 2020 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32996 * 119.99908 * 2 1 4 4 C 1.47102 * 119.99998 * 180.27909 * 3 2 1 5 5 O 1.21613 * 119.99929 * 359.71761 * 4 3 2 6 6 N 1.34770 * 120.00275 * 179.72519 * 4 3 2 7 7 C 1.47256 * 135.89767 * 359.62324 * 6 4 3 8 8 C 1.52863 * 87.59846 * 153.81775 * 7 6 4 9 9 C 1.52094 * 129.75731 * 164.46917 * 8 7 6 10 10 C 1.52100 * 129.98037 * 246.49178 * 8 7 6 11 11 H 1.08997 * 117.51868 * 133.60571 * 10 8 7 12 12 C 1.50699 * 117.52350 * 348.50177 * 10 8 7 13 13 O 1.21278 * 119.99945 * 359.97438 * 12 10 8 14 14 N 1.34774 * 120.00300 * 179.97438 * 12 10 8 15 15 C 1.47069 * 136.05266 * 359.62715 * 14 12 10 16 16 C 1.53760 * 87.88512 * 152.96044 * 15 14 12 17 17 C 1.50706 * 114.26261 * 139.79066 * 16 15 14 18 18 H 1.08001 * 120.00114 * 266.47654 * 17 16 15 19 19 C 1.37873 * 119.99727 * 86.48015 * 17 16 15 20 20 N 1.31523 * 119.99846 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00318 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47259 * 89.99874 * 21 19 17 23 23 H 1.48500 * 109.47232 * 210.00026 * 21 19 17 24 24 H 1.48497 * 109.46575 * 329.99799 * 21 19 17 25 25 C 1.47066 * 136.05993 * 180.02562 * 14 12 10 26 26 C 1.47243 * 135.90425 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.46520 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46957 * 300.00050 * 1 2 3 29 29 H 1.08997 * 109.46944 * 60.00232 * 1 2 3 30 30 H 1.08001 * 119.99795 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.99761 * 359.97438 * 3 2 1 32 32 H 1.09004 * 113.51294 * 268.47671 * 7 6 4 33 33 H 1.08998 * 113.51280 * 39.06202 * 7 6 4 34 34 H 1.09007 * 117.52015 * 226.72626 * 9 8 7 35 35 H 1.08998 * 117.52503 * 11.88328 * 9 8 7 36 36 H 1.08996 * 113.47154 * 267.69540 * 15 14 12 37 37 H 1.08998 * 113.46785 * 38.14230 * 15 14 12 38 38 H 1.08990 * 114.40050 * 272.67603 * 16 15 14 39 39 H 0.96997 * 119.99573 * 179.97438 * 20 19 17 40 40 H 1.08998 * 113.46572 * 321.86458 * 25 14 12 41 41 H 1.09003 * 113.46773 * 92.30981 * 25 14 12 42 42 H 1.09009 * 113.51247 * 320.93136 * 26 6 4 43 43 H 1.09002 * 113.51700 * 91.45144 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6430 1.1518 -0.0062 5 8 4.2511 0.0986 -0.0061 6 7 4.3169 2.3189 -0.0118 7 6 3.9581 3.7471 -0.0204 8 6 5.3020 4.0227 0.6539 9 6 6.0584 5.3322 0.8163 10 6 5.6062 4.5442 2.0500 11 1 6.3730 4.0256 2.6253 12 6 4.4576 5.1012 2.8509 13 8 3.3415 5.1220 2.3768 14 7 4.6706 5.5763 4.0940 15 6 5.8282 5.7157 4.9904 16 6 5.1059 6.9047 5.6452 17 6 5.2407 6.9614 7.1451 18 1 4.4854 6.5118 7.7726 19 6 6.3283 7.5874 7.7163 20 7 6.4457 7.6373 9.0253 21 14 7.6344 8.3658 6.6310 22 1 7.2750 9.7812 6.3617 23 1 8.9482 8.3114 7.3211 24 1 7.7182 7.6235 5.3477 25 6 3.8466 6.1771 5.1537 26 6 5.7330 2.7224 -0.0183 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.0471 -0.9353 0.0004 31 1 1.6320 2.0871 -0.0004 32 1 3.8794 4.1697 -1.0221 33 1 3.0986 3.9833 0.6068 34 1 7.1227 5.3318 0.5806 35 1 5.5251 6.2541 0.5841 36 1 5.9627 4.8669 5.6608 37 1 6.7463 5.9950 4.4735 38 1 5.2863 7.8638 5.1599 39 1 7.2111 8.0774 9.4271 40 1 3.0763 6.8493 4.7759 41 1 3.4592 5.4497 5.8672 42 1 6.3663 2.0968 0.6109 43 1 6.1405 2.8633 -1.0194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268871246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:49 Heat of formation + Delta-G solvation = 56.702446 kcal Electronic energy + Delta-G solvation = -24231.625287 eV Core-core repulsion = 20667.276077 eV Total energy + Delta-G solvation = -3564.349209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94924 -39.60075 -38.52670 -37.12400 -34.68520 -34.55431 -32.69520 -29.92851 -29.23166 -27.17994 -26.23408 -25.87084 -25.15305 -23.27845 -21.45378 -20.35305 -19.37663 -18.80772 -18.11584 -17.40243 -17.30046 -16.80428 -16.08698 -15.89430 -15.34335 -14.98401 -14.69835 -14.02733 -13.93927 -13.74401 -13.55502 -13.48922 -13.35217 -13.17388 -12.79511 -12.65564 -12.33740 -12.09577 -11.89503 -11.71134 -11.68970 -11.02372 -10.90018 -10.76415 -10.70804 -10.44821 -10.14437 -9.95323 -9.83530 -9.60144 -9.40821 -9.18150 -8.79907 -8.70641 -8.13076 -6.25436 -4.28649 1.19277 2.60486 2.71383 3.16364 3.17104 3.19682 3.26295 3.27808 3.74415 3.99006 4.23362 4.26209 4.37370 4.68164 4.79862 4.91157 4.99097 5.00602 5.09631 5.17918 5.24012 5.26701 5.34810 5.37353 5.47579 5.53021 5.59361 5.68141 5.68549 5.77831 5.82408 5.90806 6.06238 6.18912 6.19283 6.27370 6.27964 6.35332 6.47997 7.08156 7.49357 7.58888 8.05667 8.24166 8.32859 8.53404 8.78175 9.35167 10.86526 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.003009 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.972877 B = 9303.114573 C = 9976.691986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.214 4.214 4 C 0.578 3.422 5 O -0.553 6.553 6 N -0.639 5.639 7 C 0.135 3.865 8 C -0.154 4.154 9 C -0.119 4.119 10 C -0.142 4.142 11 H 0.125 0.875 12 C 0.563 3.437 13 O -0.558 6.558 14 N -0.639 5.639 15 C 0.084 3.916 16 C -0.005 4.005 17 C -0.514 4.514 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.260 1.260 25 C 0.114 3.886 26 C 0.146 3.854 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.267 0.733 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -7.660 -19.387 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C -0.234 4.234 4 C 0.371 3.629 5 O -0.433 6.433 6 N -0.373 5.373 7 C 0.013 3.987 8 C -0.155 4.155 9 C -0.157 4.157 10 C -0.162 4.162 11 H 0.143 0.857 12 C 0.353 3.647 13 O -0.439 6.439 14 N -0.372 5.372 15 C -0.039 4.039 16 C -0.025 4.025 17 C -0.552 4.552 18 H 0.098 0.902 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.184 1.184 25 C -0.007 4.007 26 C 0.023 3.977 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.140 -8.439 -19.667 21.798 hybrid contribution 0.962 0.455 -0.294 1.104 sum -3.178 -7.983 -19.962 21.732 Atomic orbital electron populations 1.21010 0.91876 1.03217 1.02958 1.23733 0.96433 0.98350 0.90263 1.22486 0.92579 0.99850 1.08508 1.18082 0.87889 0.81231 0.75658 1.90774 1.70462 1.30201 1.51833 1.49334 1.09260 1.05841 1.72913 1.22671 0.98041 0.77900 1.00118 1.21932 0.98946 0.96151 0.98491 1.22797 1.00840 0.94429 0.97676 1.21997 1.00284 1.04232 0.89734 0.85675 1.19005 0.88261 0.76922 0.80560 1.90566 1.24800 1.58059 1.70446 1.49897 1.15674 1.59430 1.12179 1.24015 0.89439 1.01123 0.89337 1.20788 0.91522 0.92910 0.97239 1.20765 1.09089 1.37411 0.87925 0.90226 1.25024 0.97833 0.95042 0.94826 1.69896 1.30235 1.42928 1.09692 0.86876 0.81229 0.80323 0.81241 1.20141 1.21246 1.18442 1.23135 0.96470 0.95339 0.85783 1.22369 0.84386 0.90851 1.00083 0.91242 0.90479 0.90674 0.85712 0.85596 0.89290 0.87431 0.87106 0.87455 0.89697 0.92127 0.92114 0.92315 0.91953 0.90142 0.90185 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 10.19 36.01 0.37 -0.56 16 2 C -0.07 -0.68 9.84 -36.12 -0.36 -1.04 16 3 C -0.21 -2.50 9.50 -37.80 -0.36 -2.86 16 4 C 0.58 8.47 8.01 -12.67 -0.10 8.37 16 5 O -0.55 -9.78 16.99 5.27 0.09 -9.69 16 6 N -0.64 -8.33 3.69 -185.79 -0.69 -9.02 16 7 C 0.13 1.55 7.93 -7.51 -0.06 1.50 16 8 C -0.15 -1.74 3.14 -155.71 -0.49 -2.23 16 9 C -0.12 -1.21 10.24 -27.08 -0.28 -1.48 16 10 C -0.14 -1.89 6.02 -92.12 -0.55 -2.44 16 11 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 12 C 0.56 9.76 7.86 -10.99 -0.09 9.68 16 13 O -0.56 -10.75 15.05 5.56 0.08 -10.66 16 14 N -0.64 -11.73 3.69 -185.03 -0.68 -12.41 16 15 C 0.08 1.55 7.44 -8.36 -0.06 1.49 16 16 C 0.00 -0.10 2.97 -91.10 -0.27 -0.37 16 17 C -0.51 -12.98 9.38 -34.44 -0.32 -13.30 16 18 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 19 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 21 Si 0.88 19.34 27.15 -169.99 -4.62 14.72 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.26 -5.27 5.72 56.52 0.32 -4.95 16 25 C 0.11 2.20 8.17 -8.49 -0.07 2.13 16 26 C 0.15 1.58 8.62 -7.65 -0.07 1.51 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.13 1.34 7.49 -52.49 -0.39 0.94 16 31 H 0.13 1.30 7.97 -52.49 -0.42 0.88 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 1.48 6.01 -51.93 -0.31 1.16 16 34 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 37 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 38 H 0.06 1.27 7.03 -51.93 -0.37 0.91 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 42 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -31.79 364.89 -8.91 -40.70 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.57 Total: 3.07 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.81 Total: 2.29 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.59 Total: -45.93 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.17 Total: -20.35 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.62 Total: 14.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.79 -8.91 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.400 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds