Wall clock time and date at job start Fri Apr 10 2020 14:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32996 * 119.99908 * 2 1 4 4 C 1.47102 * 119.99998 * 180.27909 * 3 2 1 5 5 O 1.21613 * 119.99929 * 359.71761 * 4 3 2 6 6 N 1.34770 * 120.00275 * 179.72519 * 4 3 2 7 7 C 1.47256 * 135.89767 * 359.62324 * 6 4 3 8 8 C 1.52863 * 87.59846 * 153.81775 * 7 6 4 9 9 C 1.52094 * 129.75731 * 164.46917 * 8 7 6 10 10 C 1.52100 * 129.98037 * 246.49178 * 8 7 6 11 11 H 1.08997 * 117.51868 * 133.60571 * 10 8 7 12 12 C 1.50699 * 117.52350 * 348.50177 * 10 8 7 13 13 O 1.21278 * 119.99945 * 359.97438 * 12 10 8 14 14 N 1.34774 * 120.00300 * 179.97438 * 12 10 8 15 15 C 1.47069 * 136.05266 * 359.62715 * 14 12 10 16 16 C 1.53760 * 87.88512 * 152.96044 * 15 14 12 17 17 C 1.50706 * 114.26261 * 139.79066 * 16 15 14 18 18 H 1.08001 * 120.00114 * 266.47654 * 17 16 15 19 19 C 1.37873 * 119.99727 * 86.48015 * 17 16 15 20 20 N 1.31523 * 119.99846 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00318 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47259 * 89.99874 * 21 19 17 23 23 H 1.48500 * 109.47232 * 210.00026 * 21 19 17 24 24 H 1.48497 * 109.46575 * 329.99799 * 21 19 17 25 25 C 1.47066 * 136.05993 * 180.02562 * 14 12 10 26 26 C 1.47243 * 135.90425 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.46520 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46957 * 300.00050 * 1 2 3 29 29 H 1.08997 * 109.46944 * 60.00232 * 1 2 3 30 30 H 1.08001 * 119.99795 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.99761 * 359.97438 * 3 2 1 32 32 H 1.09004 * 113.51294 * 268.47671 * 7 6 4 33 33 H 1.08998 * 113.51280 * 39.06202 * 7 6 4 34 34 H 1.09007 * 117.52015 * 226.72626 * 9 8 7 35 35 H 1.08998 * 117.52503 * 11.88328 * 9 8 7 36 36 H 1.08996 * 113.47154 * 267.69540 * 15 14 12 37 37 H 1.08998 * 113.46785 * 38.14230 * 15 14 12 38 38 H 1.08990 * 114.40050 * 272.67603 * 16 15 14 39 39 H 0.96997 * 119.99573 * 179.97438 * 20 19 17 40 40 H 1.08998 * 113.46572 * 321.86458 * 25 14 12 41 41 H 1.09003 * 113.46773 * 92.30981 * 25 14 12 42 42 H 1.09009 * 113.51247 * 320.93136 * 26 6 4 43 43 H 1.09002 * 113.51700 * 91.45144 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6430 1.1518 -0.0062 5 8 4.2511 0.0986 -0.0061 6 7 4.3169 2.3189 -0.0118 7 6 3.9581 3.7471 -0.0204 8 6 5.3020 4.0227 0.6539 9 6 6.0584 5.3322 0.8163 10 6 5.6062 4.5442 2.0500 11 1 6.3730 4.0256 2.6253 12 6 4.4576 5.1012 2.8509 13 8 3.3415 5.1220 2.3768 14 7 4.6706 5.5763 4.0940 15 6 5.8282 5.7157 4.9904 16 6 5.1059 6.9047 5.6452 17 6 5.2407 6.9614 7.1451 18 1 4.4854 6.5118 7.7726 19 6 6.3283 7.5874 7.7163 20 7 6.4457 7.6373 9.0253 21 14 7.6344 8.3658 6.6310 22 1 7.2750 9.7812 6.3617 23 1 8.9482 8.3114 7.3211 24 1 7.7182 7.6235 5.3477 25 6 3.8466 6.1771 5.1537 26 6 5.7330 2.7224 -0.0183 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.0471 -0.9353 0.0004 31 1 1.6320 2.0871 -0.0004 32 1 3.8794 4.1697 -1.0221 33 1 3.0986 3.9833 0.6068 34 1 7.1227 5.3318 0.5806 35 1 5.5251 6.2541 0.5841 36 1 5.9627 4.8669 5.6608 37 1 6.7463 5.9950 4.4735 38 1 5.2863 7.8638 5.1599 39 1 7.2111 8.0774 9.4271 40 1 3.0763 6.8493 4.7759 41 1 3.4592 5.4497 5.8672 42 1 6.3663 2.0968 0.6109 43 1 6.1405 2.8633 -1.0194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268871246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:48 Heat of formation + Delta-G solvation = 36.645299 kcal Electronic energy + Delta-G solvation = -24232.495030 eV Core-core repulsion = 20667.276077 eV Total energy + Delta-G solvation = -3565.218953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97226 -40.95392 -39.69617 -38.48302 -35.65901 -35.40848 -34.65108 -31.47927 -30.19161 -28.10539 -27.42369 -27.06718 -26.73940 -24.47521 -22.33518 -21.80160 -20.42017 -19.89432 -19.31812 -19.13460 -18.36181 -18.13196 -17.18675 -16.84591 -16.71730 -16.42543 -16.04594 -15.35739 -15.13379 -14.88319 -14.70324 -14.57049 -14.33484 -14.20715 -14.07499 -13.49665 -13.47421 -13.36709 -13.26965 -13.12438 -12.59207 -12.48300 -12.41459 -11.99832 -11.80290 -11.61813 -11.58221 -11.37304 -11.20663 -10.98637 -10.69788 -10.54728 -10.45082 -9.76452 -9.62289 -8.26133 -6.34632 0.29862 1.43126 1.45626 1.46420 1.57628 1.73927 1.89967 2.17062 2.41288 2.76551 3.01005 3.05749 3.32943 3.48516 3.68812 3.82997 4.03521 4.04734 4.22464 4.25956 4.29558 4.38618 4.43835 4.48353 4.55070 4.58263 4.62593 4.65828 4.74023 4.74878 4.78479 4.81908 4.84389 4.88951 4.94629 5.04123 5.08911 5.38302 5.40164 5.51171 5.61632 6.29216 6.59914 6.71903 6.86922 7.01599 7.14225 7.33360 8.89446 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.003009 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.972877 B = 9303.114573 C = 9976.691986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C -0.237 4.237 4 C 0.566 3.434 5 O -0.597 6.597 6 N -0.648 5.648 7 C 0.137 3.863 8 C -0.151 4.151 9 C -0.086 4.086 10 C -0.167 4.167 11 H 0.134 0.866 12 C 0.558 3.442 13 O -0.581 6.581 14 N -0.642 5.642 15 C 0.098 3.902 16 C -0.011 4.011 17 C -0.516 4.516 18 H 0.037 0.963 19 C 0.017 3.983 20 N -0.946 5.946 21 Si 0.943 3.057 22 H -0.273 1.273 23 H -0.291 1.291 24 H -0.224 1.224 25 C 0.114 3.886 26 C 0.146 3.854 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.267 0.733 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -7.116 -22.719 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.258 4.258 4 C 0.360 3.640 5 O -0.481 6.481 6 N -0.381 5.381 7 C 0.015 3.985 8 C -0.152 4.152 9 C -0.123 4.123 10 C -0.188 4.188 11 H 0.152 0.848 12 C 0.350 3.650 13 O -0.463 6.463 14 N -0.374 5.374 15 C -0.025 4.025 16 C -0.030 4.030 17 C -0.554 4.554 18 H 0.055 0.945 19 C -0.182 4.182 20 N -0.585 5.585 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.217 1.217 24 H -0.146 1.146 25 C -0.009 4.009 26 C 0.024 3.976 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.054 -7.878 -23.033 24.534 hybrid contribution 0.452 0.233 0.784 0.934 sum -2.603 -7.646 -22.249 23.670 Atomic orbital electron populations 1.21077 0.89313 1.04585 1.03761 1.23996 0.98214 0.97371 0.87622 1.22526 0.91331 1.00941 1.10981 1.18589 0.89032 0.81144 0.75186 1.90734 1.71455 1.31629 1.54294 1.49515 1.10601 1.06047 1.71888 1.22786 0.97273 0.77025 1.01406 1.21914 0.99080 0.97377 0.96866 1.22988 1.02592 0.93376 0.93387 1.22018 0.99533 1.06707 0.90550 0.84807 1.19757 0.89206 0.76036 0.80016 1.90564 1.26218 1.58817 1.70722 1.49877 1.14955 1.60111 1.12495 1.23716 0.90135 0.99408 0.89220 1.20709 0.93514 0.94399 0.94424 1.20944 1.07857 1.36395 0.90155 0.94473 1.25947 1.00451 0.95711 0.96046 1.70058 1.31429 1.44912 1.12098 0.85808 0.77455 0.79530 0.80575 1.19872 1.21700 1.14627 1.22981 0.96231 0.95257 0.86399 1.22585 0.83301 0.90077 1.01603 0.89699 0.90082 0.89120 0.86803 0.84475 0.86178 0.89870 0.83675 0.87201 0.90271 0.89651 0.91169 0.92369 0.91485 0.91061 0.90912 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 10.19 71.24 0.73 -0.85 16 2 C -0.05 -1.01 9.84 24.52 0.24 -0.77 16 3 C -0.24 -5.49 9.50 23.43 0.22 -5.27 16 4 C 0.57 16.57 8.01 86.57 0.69 17.26 16 5 O -0.60 -21.54 16.99 -4.07 -0.07 -21.61 16 6 N -0.65 -16.05 3.69 -859.97 -3.17 -19.22 16 7 C 0.14 2.85 7.93 83.72 0.66 3.52 16 8 C -0.15 -2.95 3.14 -52.96 -0.17 -3.12 16 9 C -0.09 -1.33 10.24 30.37 0.31 -1.02 16 10 C -0.17 -3.96 6.02 -11.77 -0.07 -4.03 16 11 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 12 C 0.56 18.35 7.86 87.66 0.69 19.04 16 13 O -0.58 -21.79 15.05 -3.02 -0.05 -21.84 16 14 N -0.64 -22.54 3.69 -857.69 -3.16 -25.70 16 15 C 0.10 3.43 7.44 83.27 0.62 4.05 16 16 C -0.01 -0.45 2.97 -11.11 -0.03 -0.48 16 17 C -0.52 -26.60 9.38 25.60 0.24 -26.36 16 18 H 0.04 2.16 8.06 -2.91 -0.02 2.14 16 19 C 0.02 0.89 5.47 84.65 0.46 1.35 16 20 N -0.95 -55.37 13.96 21.45 0.30 -55.07 16 21 Si 0.94 38.85 27.15 68.60 1.86 40.71 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.22 -7.81 5.72 99.48 0.57 -7.24 16 25 C 0.11 4.36 8.17 83.19 0.68 5.04 16 26 C 0.15 2.77 8.62 83.63 0.72 3.49 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 2.46 7.49 -2.91 -0.02 2.44 16 31 H 0.14 2.76 7.97 -2.91 -0.02 2.74 16 32 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.08 2.20 6.01 -2.39 -0.01 2.18 16 34 H 0.15 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 37 H 0.09 2.60 7.15 -2.39 -0.02 2.58 16 38 H 0.07 2.77 7.03 -2.39 -0.02 2.76 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 42 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -72.42 364.89 2.58 -69.85 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.86 Total: 21.01 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.00 Total: 11.86 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -6.04 Total: -99.98 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.11 Total: -43.45 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.86 Total: 40.71 kcal Total: -72.42 2.58 -69.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.491 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds