Wall clock time and date at job start Fri Apr 10 2020 14:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32991 * 120.00115 * 2 1 4 4 C 1.47103 * 120.00127 * 180.02562 * 3 2 1 5 5 O 1.21612 * 120.00220 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.47721 * 134.39203 * 179.97438 * 6 4 3 8 8 C 1.53297 * 85.85315 * 155.91071 * 7 6 4 9 9 C 1.52331 * 128.81331 * 243.37855 * 8 7 6 10 10 C 1.52319 * 128.81866 * 163.01581 * 8 7 6 11 11 H 1.09001 * 117.55795 * 225.31095 * 10 8 7 12 12 C 1.50699 * 117.51877 * 10.45496 * 10 8 7 13 13 O 1.21280 * 120.00081 * 359.80963 * 12 10 8 14 14 N 1.34781 * 120.00312 * 179.81342 * 12 10 8 15 15 C 1.47580 * 134.49134 * 179.97438 * 14 12 10 16 16 C 1.53952 * 86.11500 * 155.36347 * 15 14 12 17 17 C 1.50695 * 113.74060 * 137.95290 * 16 15 14 18 18 H 1.07995 * 120.00496 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99572 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47261 * 299.99924 * 21 19 17 24 24 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 25 25 C 1.47578 * 134.49101 * 0.02562 * 14 12 10 26 26 C 1.47721 * 134.38990 * 0.02562 * 6 4 3 27 27 H 1.08997 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47141 * 299.99948 * 1 2 3 29 29 H 1.08999 * 109.47040 * 59.99797 * 1 2 3 30 30 H 1.08004 * 120.00048 * 179.97438 * 2 1 3 31 31 H 1.08004 * 119.99837 * 359.97438 * 3 2 1 32 32 H 1.08997 * 113.81324 * 41.67827 * 7 6 4 33 33 H 1.09003 * 113.80784 * 270.13935 * 7 6 4 34 34 H 1.08995 * 117.51274 * 134.66303 * 9 8 7 35 35 H 1.09001 * 117.51433 * 349.54004 * 9 8 7 36 36 H 1.08998 * 113.77108 * 41.06531 * 15 14 12 37 37 H 1.08991 * 113.87349 * 269.67144 * 15 14 12 38 38 H 1.08997 * 113.74240 * 269.15892 * 16 15 14 39 39 H 0.97006 * 119.99995 * 359.97438 * 20 19 17 40 40 H 1.08997 * 113.77175 * 90.33932 * 25 14 12 41 41 H 1.09004 * 113.76848 * 318.93948 * 25 14 12 42 42 H 1.09005 * 113.81362 * 89.86352 * 26 6 4 43 43 H 1.08996 * 113.81451 * 318.32049 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1517 -0.0006 5 8 4.2511 0.0986 -0.0006 6 7 4.3169 2.3190 -0.0011 7 6 5.7478 2.6862 -0.0013 8 6 5.2935 4.0103 -0.6259 9 6 5.6233 4.5810 -1.9993 10 6 6.0532 5.3262 -0.7322 11 1 5.5163 6.2404 -0.4790 12 6 7.5187 5.3145 -0.3811 13 8 8.0490 4.2831 -0.0263 14 7 8.2401 6.4501 -0.4612 15 6 9.6503 6.8000 -0.2028 16 6 9.4326 7.9642 -1.1864 17 6 10.0552 9.2613 -0.7385 18 1 10.5931 9.3076 0.1968 19 6 9.9380 10.3892 -1.5229 20 7 9.2825 10.3331 -2.6617 21 14 10.7104 11.9970 -0.9682 22 1 12.1766 11.8157 -0.8172 23 1 10.1252 12.4038 0.3346 24 1 10.4440 13.0497 -1.9812 25 6 7.9367 7.8434 -0.8416 26 6 3.9194 3.7417 -0.0008 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9353 0.0004 31 1 1.6319 2.0871 -0.0004 32 1 6.3592 2.0738 -0.6641 33 1 6.1746 2.7936 0.9960 34 1 4.8030 5.0045 -2.5787 35 1 6.4004 4.0822 -2.5784 36 1 10.3604 6.0527 -0.5570 37 1 9.8450 7.1203 0.8206 38 1 9.6682 7.7146 -2.2209 39 1 8.8817 9.4980 -2.9499 40 1 7.6268 8.4697 -0.0052 41 1 7.2781 7.9293 -1.7060 42 1 3.7995 4.1650 0.9966 43 1 3.0832 3.9652 -0.6632 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268871247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:51 Heat of formation + Delta-G solvation = 41.851599 kcal Electronic energy + Delta-G solvation = -23836.182858 eV Core-core repulsion = 20271.189668 eV Total energy + Delta-G solvation = -3564.993191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80635 -39.50213 -38.42714 -36.99899 -34.72099 -34.51011 -32.91460 -29.55281 -28.97104 -27.16158 -26.37747 -25.49804 -25.03031 -23.22273 -21.49461 -20.60443 -19.46399 -18.73879 -18.17627 -17.37970 -17.29958 -16.61923 -16.01291 -15.97102 -15.31023 -14.95724 -14.31254 -14.09105 -13.88343 -13.80853 -13.73105 -13.55733 -13.45324 -13.13683 -12.71293 -12.49264 -12.21751 -11.93876 -11.81484 -11.73203 -11.54525 -11.05321 -10.96202 -10.85953 -10.72554 -10.40989 -10.20944 -9.86405 -9.71597 -9.71157 -9.46604 -8.82878 -8.67039 -8.57886 -8.02643 -6.55560 -4.29119 1.09857 2.53823 2.82627 3.12489 3.28693 3.35543 3.37391 3.55380 3.70352 4.05624 4.16479 4.40269 4.41851 4.67032 4.69457 4.86659 4.99339 5.08250 5.10352 5.13022 5.13842 5.14756 5.27868 5.39589 5.46041 5.55750 5.57390 5.73882 5.80778 5.84184 5.86327 5.99159 6.06898 6.11340 6.18801 6.20730 6.35468 6.40312 6.57303 7.23764 7.54844 7.93805 8.02444 8.23118 8.32322 8.57767 8.67446 9.43704 10.83807 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.039879 B = 0.002310 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.957134 B =12117.572597 C =12504.606258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.216 4.216 4 C 0.568 3.432 5 O -0.549 6.549 6 N -0.641 5.641 7 C 0.166 3.834 8 C -0.152 4.152 9 C -0.112 4.112 10 C -0.154 4.154 11 H 0.126 0.874 12 C 0.552 3.448 13 O -0.560 6.560 14 N -0.635 5.635 15 C 0.112 3.888 16 C 0.013 3.987 17 C -0.596 4.596 18 H 0.056 0.944 19 C 0.025 3.975 20 N -0.903 5.903 21 Si 1.069 2.931 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.282 1.282 25 C 0.096 3.904 26 C 0.144 3.856 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.270 0.730 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 -11.306 3.598 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.237 4.237 4 C 0.361 3.639 5 O -0.429 6.429 6 N -0.376 5.376 7 C 0.044 3.956 8 C -0.153 4.153 9 C -0.149 4.149 10 C -0.175 4.175 11 H 0.144 0.856 12 C 0.341 3.659 13 O -0.440 6.440 14 N -0.368 5.368 15 C -0.009 4.009 16 C -0.006 4.006 17 C -0.634 4.634 18 H 0.075 0.925 19 C -0.181 4.181 20 N -0.537 5.537 21 Si 0.897 3.103 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.207 1.207 25 C -0.027 4.027 26 C 0.022 3.978 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.272 -11.177 3.362 20.025 hybrid contribution -0.324 -1.329 0.562 1.479 sum -16.595 -12.506 3.924 21.147 Atomic orbital electron populations 1.21007 0.91917 1.03300 1.02819 1.23753 0.96378 0.98538 0.90131 1.22505 0.92786 0.99614 1.08765 1.18208 0.87879 0.81818 0.76042 1.90790 1.70435 1.30285 1.51355 1.49844 1.09708 1.05056 1.72963 1.22492 0.81854 0.90077 1.01148 1.22535 0.96543 0.94433 1.01830 1.22813 1.02845 1.00253 0.88998 1.22133 0.94115 0.96707 1.04587 0.85573 1.19201 0.86309 0.82813 0.77545 1.90642 1.72220 1.31612 1.49518 1.50336 1.12910 1.08553 1.64954 1.23359 0.80801 0.96157 1.00610 1.20648 0.90624 0.93958 0.95375 1.21812 1.38512 0.94348 1.08776 0.92538 1.25887 0.95477 1.02867 0.93865 1.70823 1.32180 1.29964 1.20731 0.83530 0.76049 0.75119 0.75650 1.21278 1.21291 1.20725 1.23880 1.02265 0.77913 0.98603 1.22703 0.95411 0.79114 1.00605 0.91210 0.90656 0.90626 0.85654 0.85816 0.89696 0.88680 0.87185 0.87680 0.91970 0.90560 0.92740 0.91942 0.90269 0.92042 0.88838 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 10.19 36.00 0.37 -0.31 16 2 C -0.07 -0.57 9.84 -36.13 -0.36 -0.92 16 3 C -0.22 -2.07 9.46 -37.81 -0.36 -2.43 16 4 C 0.57 7.76 7.99 -12.66 -0.10 7.66 16 5 O -0.55 -9.65 16.95 5.27 0.09 -9.56 16 6 N -0.64 -8.05 3.61 -183.13 -0.66 -8.71 16 7 C 0.17 2.33 7.27 -3.22 -0.02 2.30 16 8 C -0.15 -1.82 3.04 -155.00 -0.47 -2.29 16 9 C -0.11 -1.30 10.24 -26.99 -0.28 -1.57 16 10 C -0.15 -2.07 5.94 -92.04 -0.55 -2.62 16 11 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 12 C 0.55 10.01 7.84 -10.98 -0.09 9.92 16 13 O -0.56 -11.57 15.86 5.56 0.09 -11.48 16 14 N -0.63 -12.20 3.61 -178.40 -0.64 -12.85 16 15 C 0.11 2.29 8.39 -2.97 -0.02 2.26 16 16 C 0.01 0.30 3.10 -90.83 -0.28 0.02 16 17 C -0.60 -14.99 8.77 -34.44 -0.30 -15.29 16 18 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 20 N -0.90 -24.73 13.65 55.43 0.76 -23.98 16 21 Si 1.07 23.01 29.90 -169.99 -5.08 17.93 16 22 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.10 1.88 8.12 -2.96 -0.02 1.86 16 26 C 0.14 1.33 8.48 -3.21 -0.03 1.31 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.13 1.19 7.49 -52.48 -0.39 0.80 16 31 H 0.12 0.88 7.89 -52.48 -0.41 0.46 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.40 8.01 -51.93 -0.42 0.99 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 38 H 0.05 1.32 7.61 -51.93 -0.40 0.92 16 39 H 0.27 7.27 7.04 -40.82 -0.29 6.98 16 40 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -31.82 370.61 -9.08 -40.90 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.60 Total: 1.72 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.61 Total: 0.44 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.55 Total: -45.53 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.04 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.08 Total: 17.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.82 -9.08 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.752 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds