Wall clock time and date at job start Fri Apr 10 2020 14:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32991 * 120.00115 * 2 1 4 4 C 1.47103 * 120.00127 * 180.02562 * 3 2 1 5 5 O 1.21612 * 120.00220 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.47721 * 134.39203 * 179.97438 * 6 4 3 8 8 C 1.53297 * 85.85315 * 155.91071 * 7 6 4 9 9 C 1.52331 * 128.81331 * 243.37855 * 8 7 6 10 10 C 1.52319 * 128.81866 * 163.01581 * 8 7 6 11 11 H 1.09001 * 117.55795 * 225.31095 * 10 8 7 12 12 C 1.50699 * 117.51877 * 10.45496 * 10 8 7 13 13 O 1.21280 * 120.00081 * 359.80963 * 12 10 8 14 14 N 1.34781 * 120.00312 * 179.81342 * 12 10 8 15 15 C 1.47580 * 134.49134 * 179.97438 * 14 12 10 16 16 C 1.53952 * 86.11500 * 155.36347 * 15 14 12 17 17 C 1.50695 * 113.74060 * 137.95290 * 16 15 14 18 18 H 1.07995 * 120.00496 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99572 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47261 * 299.99924 * 21 19 17 24 24 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 25 25 C 1.47578 * 134.49101 * 0.02562 * 14 12 10 26 26 C 1.47721 * 134.38990 * 0.02562 * 6 4 3 27 27 H 1.08997 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47141 * 299.99948 * 1 2 3 29 29 H 1.08999 * 109.47040 * 59.99797 * 1 2 3 30 30 H 1.08004 * 120.00048 * 179.97438 * 2 1 3 31 31 H 1.08004 * 119.99837 * 359.97438 * 3 2 1 32 32 H 1.08997 * 113.81324 * 41.67827 * 7 6 4 33 33 H 1.09003 * 113.80784 * 270.13935 * 7 6 4 34 34 H 1.08995 * 117.51274 * 134.66303 * 9 8 7 35 35 H 1.09001 * 117.51433 * 349.54004 * 9 8 7 36 36 H 1.08998 * 113.77108 * 41.06531 * 15 14 12 37 37 H 1.08991 * 113.87349 * 269.67144 * 15 14 12 38 38 H 1.08997 * 113.74240 * 269.15892 * 16 15 14 39 39 H 0.97006 * 119.99995 * 359.97438 * 20 19 17 40 40 H 1.08997 * 113.77175 * 90.33932 * 25 14 12 41 41 H 1.09004 * 113.76848 * 318.93948 * 25 14 12 42 42 H 1.09005 * 113.81362 * 89.86352 * 26 6 4 43 43 H 1.08996 * 113.81451 * 318.32049 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1517 -0.0006 5 8 4.2511 0.0986 -0.0006 6 7 4.3169 2.3190 -0.0011 7 6 5.7478 2.6862 -0.0013 8 6 5.2935 4.0103 -0.6259 9 6 5.6233 4.5810 -1.9993 10 6 6.0532 5.3262 -0.7322 11 1 5.5163 6.2404 -0.4790 12 6 7.5187 5.3145 -0.3811 13 8 8.0490 4.2831 -0.0263 14 7 8.2401 6.4501 -0.4612 15 6 9.6503 6.8000 -0.2028 16 6 9.4326 7.9642 -1.1864 17 6 10.0552 9.2613 -0.7385 18 1 10.5931 9.3076 0.1968 19 6 9.9380 10.3892 -1.5229 20 7 9.2825 10.3331 -2.6617 21 14 10.7104 11.9970 -0.9682 22 1 12.1766 11.8157 -0.8172 23 1 10.1252 12.4038 0.3346 24 1 10.4440 13.0497 -1.9812 25 6 7.9367 7.8434 -0.8416 26 6 3.9194 3.7417 -0.0008 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9353 0.0004 31 1 1.6319 2.0871 -0.0004 32 1 6.3592 2.0738 -0.6641 33 1 6.1746 2.7936 0.9960 34 1 4.8030 5.0045 -2.5787 35 1 6.4004 4.0822 -2.5784 36 1 10.3604 6.0527 -0.5570 37 1 9.8450 7.1203 0.8206 38 1 9.6682 7.7146 -2.2209 39 1 8.8817 9.4980 -2.9499 40 1 7.6268 8.4697 -0.0052 41 1 7.2781 7.9293 -1.7060 42 1 3.7995 4.1650 0.9966 43 1 3.0832 3.9652 -0.6632 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268871247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:50 Heat of formation + Delta-G solvation = 22.604999 kcal Electronic energy + Delta-G solvation = -23837.017453 eV Core-core repulsion = 20271.189668 eV Total energy + Delta-G solvation = -3565.827786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88881 -40.89891 -39.63633 -38.46833 -35.62365 -35.37245 -34.83223 -30.96700 -30.04551 -27.93402 -27.26162 -27.08894 -26.80694 -24.57622 -22.48828 -22.00351 -20.49324 -19.70000 -19.44259 -19.07275 -18.30444 -18.06859 -17.13922 -17.05466 -16.73017 -16.41389 -15.60708 -15.57321 -15.14793 -14.99032 -14.60656 -14.41648 -14.24833 -14.03549 -13.99363 -13.62642 -13.47017 -13.28996 -13.25414 -13.06864 -12.79057 -12.43802 -12.37102 -11.98745 -11.89513 -11.84874 -11.48144 -11.38858 -11.07528 -10.86678 -10.54096 -10.43839 -10.40388 -9.79580 -9.63829 -8.59004 -6.32471 0.34043 1.36666 1.62741 1.67816 1.70186 1.87549 1.88095 2.20761 2.62455 2.68330 2.98923 3.19382 3.30215 3.52326 3.61667 3.77706 4.09261 4.11024 4.19514 4.27944 4.28648 4.35743 4.39544 4.44841 4.46778 4.52900 4.59869 4.64230 4.69513 4.72692 4.74353 4.78376 4.82412 4.83875 4.85759 5.03197 5.09540 5.41448 5.43825 5.57513 6.02669 6.21310 6.61002 6.61408 6.82548 7.01981 7.10764 7.46599 8.81644 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.039879 B = 0.002310 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.957134 B =12117.572597 C =12504.606258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 C -0.227 4.227 4 C 0.556 3.444 5 O -0.606 6.606 6 N -0.642 5.642 7 C 0.152 3.848 8 C -0.145 4.145 9 C -0.101 4.101 10 C -0.160 4.160 11 H 0.154 0.846 12 C 0.545 3.455 13 O -0.592 6.592 14 N -0.637 5.637 15 C 0.114 3.886 16 C -0.001 4.001 17 C -0.604 4.604 18 H 0.054 0.946 19 C -0.020 4.020 20 N -0.929 5.929 21 Si 1.112 2.888 22 H -0.277 1.277 23 H -0.269 1.269 24 H -0.288 1.288 25 C 0.116 3.884 26 C 0.159 3.841 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 -10.054 4.018 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 C -0.247 4.247 4 C 0.351 3.649 5 O -0.490 6.490 6 N -0.375 5.375 7 C 0.029 3.971 8 C -0.147 4.147 9 C -0.138 4.138 10 C -0.182 4.182 11 H 0.171 0.829 12 C 0.337 3.663 13 O -0.474 6.474 14 N -0.370 5.370 15 C -0.009 4.009 16 C -0.020 4.020 17 C -0.642 4.642 18 H 0.072 0.928 19 C -0.220 4.220 20 N -0.565 5.565 21 Si 0.935 3.065 22 H -0.202 1.202 23 H -0.194 1.194 24 H -0.213 1.213 25 C -0.006 4.006 26 C 0.038 3.962 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.176 0.824 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.132 0.868 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.520 -9.910 3.793 22.218 hybrid contribution 0.764 -1.867 0.441 2.065 sum -18.756 -11.777 4.235 22.548 Atomic orbital electron populations 1.21062 0.88892 1.04421 1.04133 1.24004 0.98402 0.97395 0.87833 1.22522 0.89991 1.01504 1.10712 1.19047 0.89667 0.81193 0.75006 1.90753 1.71840 1.32301 1.54126 1.49947 1.08909 1.06528 1.72166 1.22390 0.82964 0.91627 1.00122 1.22577 0.97843 0.92165 1.02094 1.22978 1.03198 0.98974 0.88623 1.22111 0.90848 0.98623 1.06584 0.82886 1.20060 0.88212 0.81622 0.76422 1.90634 1.73466 1.32541 1.50789 1.50314 1.12336 1.08936 1.65379 1.23227 0.82021 0.95374 1.00242 1.20606 0.93100 0.93814 0.94496 1.22098 1.38213 0.95370 1.08530 0.92796 1.27099 0.95429 1.05957 0.93519 1.70924 1.33941 1.29695 1.21913 0.82964 0.75959 0.71786 0.75840 1.20249 1.19371 1.21321 1.23571 1.00019 0.77994 0.99050 1.22961 0.94645 0.76254 1.02306 0.90375 0.89125 0.89083 0.87842 0.82355 0.92563 0.90138 0.83304 0.89549 0.92361 0.90071 0.95091 0.92838 0.89830 0.90785 0.86774 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 10.19 71.24 0.73 -0.14 16 2 C -0.06 -0.84 9.84 24.52 0.24 -0.60 16 3 C -0.23 -3.84 9.46 23.43 0.22 -3.61 16 4 C 0.56 15.05 7.99 86.57 0.69 15.75 16 5 O -0.61 -22.39 16.95 -4.07 -0.07 -22.45 16 6 N -0.64 -15.47 3.61 -851.55 -3.07 -18.55 16 7 C 0.15 4.37 7.27 86.24 0.63 4.99 16 8 C -0.15 -3.18 3.04 -52.38 -0.16 -3.34 16 9 C -0.10 -2.09 10.24 30.42 0.31 -1.78 16 10 C -0.16 -3.96 5.94 -11.71 -0.07 -4.03 16 11 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 12 C 0.55 19.58 7.84 87.66 0.69 20.26 16 13 O -0.59 -25.10 15.86 -3.03 -0.05 -25.15 16 14 N -0.64 -24.27 3.61 -836.73 -3.02 -27.28 16 15 C 0.11 4.68 8.39 86.48 0.73 5.41 16 16 C 0.00 -0.04 3.10 -10.87 -0.03 -0.07 16 17 C -0.60 -30.37 8.77 25.60 0.22 -30.14 16 18 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 19 C -0.02 -1.03 5.46 84.66 0.46 -0.57 16 20 N -0.93 -51.05 13.65 21.45 0.29 -50.76 16 21 Si 1.11 45.68 29.90 68.60 2.05 47.73 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.12 4.44 8.12 86.49 0.70 5.14 16 26 C 0.16 2.34 8.48 86.25 0.73 3.07 16 27 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 1.99 7.49 -2.91 -0.02 1.97 16 31 H 0.16 1.51 7.89 -2.91 -0.02 1.49 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.51 8.01 -2.39 -0.02 2.49 16 34 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.08 3.24 8.09 -2.39 -0.02 3.22 16 38 H 0.03 1.55 7.61 -2.39 -0.02 1.53 16 39 H 0.26 14.29 7.04 -92.70 -0.65 13.64 16 40 H 0.08 3.15 8.09 -2.39 -0.02 3.13 16 41 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.92 370.61 3.34 -69.58 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.11 Total: 16.54 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.09 Total: 10.34 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -5.80 Total: -96.59 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.12 Total: -47.60 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.05 Total: 47.73 kcal Total: -72.92 3.34 -69.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.186 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds