Wall clock time and date at job start Fri Apr 10 2020 14:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32993 * 120.00504 * 2 1 4 4 C 1.47095 * 120.00470 * 180.02562 * 3 2 1 5 5 O 1.21616 * 120.00031 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00370 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00390 * 180.02562 * 6 4 3 8 8 C 1.54412 * 129.01250 * 180.02562 * 7 6 4 9 9 C 1.54419 * 78.89086 * 180.64334 * 8 7 6 10 10 C 1.50703 * 129.01419 * 180.64405 * 9 8 7 11 11 O 1.21281 * 119.99538 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.47584 * 134.49063 * 180.02562 * 12 10 9 14 14 C 1.53947 * 86.11565 * 204.63541 * 13 12 10 15 15 C 1.50699 * 113.73968 * 222.04272 * 14 13 12 16 16 H 1.07998 * 120.00165 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99722 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47099 * 60.00960 * 19 17 15 21 21 H 1.48500 * 109.47049 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47582 * 300.00427 * 19 17 15 23 23 C 1.47577 * 134.49641 * 359.97438 * 12 10 9 24 24 C 1.54891 * 84.49409 * 43.15382 * 9 8 7 25 25 C 1.54885 * 84.49103 * 318.13307 * 9 8 7 26 26 H 1.08991 * 109.47166 * 59.99381 * 1 2 3 27 27 H 1.08996 * 109.47294 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46829 * 299.99853 * 1 2 3 29 29 H 1.08007 * 119.99833 * 180.02562 * 2 1 3 30 30 H 1.08007 * 119.99663 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99616 * 0.02562 * 6 4 3 32 32 H 1.08992 * 114.93459 * 68.15798 * 8 7 6 33 33 H 1.08998 * 114.98218 * 293.12337 * 8 7 6 34 34 H 1.09001 * 113.76908 * 90.33461 * 13 12 10 35 35 H 1.08997 * 113.76763 * 318.93723 * 13 12 10 36 36 H 1.08997 * 113.73914 * 90.73986 * 14 13 12 37 37 H 0.97000 * 119.99858 * 179.97438 * 18 17 15 38 38 H 1.08995 * 113.76947 * 41.05826 * 23 12 10 39 39 H 1.09005 * 113.76708 * 269.66738 * 23 12 10 40 40 H 1.09001 * 114.98080 * 69.39259 * 24 9 8 41 41 H 1.09003 * 114.97457 * 204.56822 * 24 9 8 42 42 H 1.09008 * 114.97367 * 155.43371 * 25 9 8 43 43 H 1.08998 * 114.98354 * 290.60293 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1517 -0.0006 5 8 4.2511 0.0985 -0.0015 6 7 4.3170 2.3189 -0.0011 7 6 5.7820 2.3189 -0.0022 8 6 6.7540 3.5187 -0.0024 9 6 7.7439 2.3337 -0.0208 10 6 9.2508 2.3563 -0.0217 11 8 9.8413 3.4156 -0.0071 12 7 9.9421 1.1996 -0.0399 13 6 11.3764 0.8518 -0.0460 14 6 10.9457 -0.4704 -0.7064 15 6 11.6640 -1.6803 -0.1669 16 1 12.4031 -1.5666 0.6124 17 6 11.3770 -2.9325 -0.6674 18 7 10.4766 -3.0710 -1.6159 19 14 12.2669 -4.4324 0.0020 20 1 11.9997 -4.5580 1.4574 21 1 11.7815 -5.6490 -0.6976 22 1 13.7272 -4.2825 -0.2221 23 6 9.5690 -0.2281 -0.0608 24 6 6.7755 1.7345 -1.0706 25 6 6.7774 1.7039 1.0127 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0470 -0.9354 -0.0004 30 1 1.6320 2.0871 0.0004 31 1 3.8319 3.1589 -0.0007 32 1 6.7582 4.1067 0.9152 33 1 6.7416 4.1210 -0.9108 34 1 11.8024 0.7273 0.9496 35 1 11.9802 1.4893 -0.6918 36 1 10.9328 -0.4330 -1.7957 37 1 10.2750 -3.9520 -1.9683 38 1 8.7294 -0.4532 -0.7183 39 1 9.4648 -0.6695 0.9305 40 1 6.7637 2.2481 -2.0320 41 1 6.7996 0.6478 -1.1516 42 1 6.8016 0.6152 1.0617 43 1 6.7672 2.1890 1.9888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268871304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:11 Heat of formation + Delta-G solvation = 75.725287 kcal Electronic energy + Delta-G solvation = -24409.939455 eV Core-core repulsion = 20846.415138 eV Total energy + Delta-G solvation = -3563.524317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03101 -39.40858 -38.81546 -36.75016 -34.69020 -33.85449 -32.63379 -29.32946 -28.38071 -26.01546 -25.71179 -25.58008 -25.03575 -24.06820 -22.25980 -20.10211 -19.73219 -18.87801 -17.80819 -17.63315 -16.86568 -16.48695 -15.70132 -15.02759 -14.95376 -14.71334 -14.44442 -14.20454 -14.10492 -13.85267 -13.65510 -13.59709 -13.19681 -12.70082 -12.30018 -12.00420 -11.79334 -11.77468 -11.57044 -11.40173 -11.20870 -11.11318 -10.93460 -10.78320 -10.44938 -10.40165 -10.29574 -9.98240 -9.68567 -9.60572 -9.26072 -9.07839 -8.95033 -8.55249 -7.84127 -6.14053 -4.19984 1.11903 2.74722 2.97083 3.12147 3.28320 3.33837 3.35391 3.53417 4.13189 4.34888 4.36611 4.42727 4.43589 4.60821 4.70257 4.72923 4.91890 5.03490 5.15947 5.16754 5.23134 5.45811 5.57886 5.63740 5.69655 5.86323 5.93694 6.02802 6.08414 6.09724 6.12376 6.13924 6.23407 6.30929 6.40973 6.51881 6.63747 6.73331 6.86538 7.34694 7.58055 7.82983 8.11402 8.20012 8.49636 8.77569 8.83065 9.46685 10.95487 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012848 B = 0.003581 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.747802 B = 7817.000066 C = 9712.331452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.224 4.224 4 C 0.546 3.454 5 O -0.527 6.527 6 N -0.674 5.674 7 C 0.093 3.907 8 C -0.083 4.083 9 C -0.142 4.142 10 C 0.588 3.412 11 O -0.561 6.561 12 N -0.631 5.631 13 C 0.104 3.896 14 C 0.034 3.966 15 C -0.521 4.521 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.105 3.895 24 C -0.100 4.100 25 C -0.096 4.096 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.406 0.594 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.265 0.735 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 9.391 2.916 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 C -0.245 4.245 4 C 0.335 3.665 5 O -0.403 6.403 6 N -0.323 5.323 7 C 0.004 3.996 8 C -0.121 4.121 9 C -0.146 4.146 10 C 0.376 3.624 11 O -0.441 6.441 12 N -0.363 5.363 13 C -0.017 4.017 14 C 0.015 3.985 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.017 4.017 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.242 0.758 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.318 9.212 2.801 20.695 hybrid contribution 0.015 -0.382 0.372 0.534 sum -18.303 8.830 3.173 20.568 Atomic orbital electron populations 1.21022 0.91954 1.03435 1.02769 1.23805 0.96408 0.98748 0.89194 1.22475 0.92636 0.99741 1.09669 1.18671 0.88173 0.83451 0.76221 1.90854 1.70058 1.30888 1.48513 1.44511 1.03535 1.08816 1.75442 1.23228 0.79400 0.98482 0.98463 1.23962 0.90779 0.94597 1.02752 1.23239 0.91624 0.99125 1.00600 1.18016 0.85036 0.82885 0.76456 1.90637 1.70354 1.30300 1.52838 1.50348 1.10190 1.06055 1.69694 1.23547 0.80953 0.96656 1.00577 1.20507 0.90399 0.90616 0.96953 1.20916 1.22983 0.90659 1.21339 0.91925 1.25022 0.94846 0.99172 0.94483 1.69939 1.31755 1.23916 1.26509 0.86606 0.80063 0.81865 0.79191 1.20084 1.21237 1.20099 1.23774 1.02146 0.75156 1.00615 1.24829 0.91084 1.01939 0.96042 1.24336 0.91167 1.01689 0.96328 0.90602 0.91126 0.90634 0.85399 0.85634 0.75831 0.90095 0.89965 0.90661 0.91927 0.91676 0.92570 0.91680 0.90694 0.90524 0.89090 0.89139 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 10.19 36.00 0.37 -0.31 16 2 C -0.06 -0.51 9.84 -36.13 -0.36 -0.86 16 3 C -0.22 -1.93 9.67 -37.81 -0.37 -2.29 16 4 C 0.55 6.80 7.76 -12.67 -0.10 6.71 16 5 O -0.53 -8.97 16.14 5.26 0.08 -8.88 16 6 N -0.67 -7.22 5.71 -63.88 -0.36 -7.58 16 7 C 0.09 1.23 3.92 -147.16 -0.58 0.65 16 8 C -0.08 -1.08 7.78 -26.71 -0.21 -1.28 16 9 C -0.14 -2.36 3.11 -172.27 -0.54 -2.89 16 10 C 0.59 12.06 8.17 -10.99 -0.09 11.97 16 11 O -0.56 -12.90 17.82 5.56 0.10 -12.80 16 12 N -0.63 -13.31 3.61 -178.41 -0.64 -13.95 16 13 C 0.10 2.21 8.39 -2.97 -0.02 2.19 16 14 C 0.03 0.82 3.62 -90.83 -0.33 0.49 16 15 C -0.52 -13.44 8.77 -34.44 -0.30 -13.74 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.88 -24.49 13.27 55.43 0.74 -23.75 16 19 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.11 2.30 8.17 -2.96 -0.02 2.28 16 24 C -0.10 -1.56 7.93 -24.71 -0.20 -1.75 16 25 C -0.10 -1.46 7.76 -25.99 -0.20 -1.66 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.13 1.27 7.49 -52.48 -0.39 0.87 16 30 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.41 2.81 8.81 -40.82 -0.36 2.45 16 32 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 34 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.69 8.13 -51.93 -0.42 1.27 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.06 1.45 7.63 -51.93 -0.40 1.05 16 39 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 40 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 41 H 0.09 1.61 7.45 -51.93 -0.39 1.22 16 42 H 0.09 1.54 7.97 -51.92 -0.41 1.12 16 43 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -32.09 370.05 -9.09 -41.17 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.52 Total: 3.62 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.04 Total: 1.21 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.27 Total: -45.29 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.18 Total: -21.68 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.09 -9.09 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.897 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds