Wall clock time and date at job start Fri Apr 10 2020 14:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 120.00125 * 2 1 4 4 C 1.47094 * 120.00107 * 180.02562 * 3 2 1 5 5 O 1.21612 * 120.00197 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99988 * 180.02562 * 4 3 2 7 7 C 1.48095 * 126.94554 * 353.99578 * 6 4 3 8 8 C 1.54957 * 103.26010 * 140.71000 * 7 6 4 9 9 C 1.54708 * 102.70391 * 37.55286 * 8 7 6 10 10 H 1.08992 * 117.82030 * 197.49418 * 9 8 7 11 11 C 1.53114 * 117.54991 * 42.06902 * 9 8 7 12 12 C 1.47387 * 126.94469 * 173.68559 * 6 4 3 13 13 C 1.50696 * 117.18015 * 344.53284 * 12 6 4 14 14 O 1.21283 * 119.99869 * 134.61475 * 13 12 6 15 15 N 1.34774 * 120.00058 * 314.60392 * 13 12 6 16 16 C 1.47072 * 136.05519 * 3.88995 * 15 13 12 17 17 C 1.53240 * 88.07961 * 207.19655 * 16 15 13 18 18 C 1.50698 * 114.32464 * 220.46957 * 17 16 15 19 19 H 1.08001 * 120.00268 * 93.75770 * 18 17 16 20 20 C 1.37882 * 120.00310 * 273.75896 * 18 17 16 21 21 N 1.31512 * 119.99558 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00498 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46907 * 59.99751 * 22 20 18 24 24 H 1.48497 * 109.46992 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46832 * 300.00131 * 22 20 18 26 26 C 1.47066 * 136.05839 * 184.24287 * 15 13 12 27 27 H 1.08997 * 109.47231 * 59.99991 * 1 2 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46738 * 299.99750 * 1 2 3 30 30 H 1.08000 * 119.99525 * 180.02562 * 2 1 3 31 31 H 1.08001 * 119.99833 * 359.97438 * 3 2 1 32 32 H 1.08998 * 110.66289 * 259.14849 * 7 6 4 33 33 H 1.09002 * 110.66037 * 22.26636 * 7 6 4 34 34 H 1.09003 * 110.76469 * 155.86072 * 8 7 6 35 35 H 1.08998 * 110.76235 * 279.24414 * 8 7 6 36 36 H 1.09004 * 117.45702 * 15.62579 * 11 9 8 37 37 H 1.09007 * 117.45156 * 160.42854 * 11 9 8 38 38 H 1.08994 * 113.46631 * 321.92662 * 16 15 13 39 39 H 1.09002 * 113.46533 * 92.37059 * 16 15 13 40 40 H 1.08994 * 114.02006 * 87.71361 * 17 16 15 41 41 H 0.96998 * 120.00375 * 179.97438 * 21 20 18 42 42 H 1.08997 * 113.47477 * 267.63440 * 26 15 13 43 43 H 1.09005 * 113.46288 * 38.01863 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1517 -0.0006 5 8 4.2511 0.0985 -0.0006 6 7 4.3169 2.3189 0.0000 7 6 3.7425 3.6784 -0.1227 8 6 4.5893 4.5130 0.8710 9 6 6.0046 3.9120 0.7004 10 1 6.7389 4.1103 1.4810 11 6 6.4727 3.5954 -0.7227 12 6 5.7738 2.5006 0.1291 13 6 6.5725 1.3247 0.6292 14 8 7.6047 1.0126 0.0741 15 7 6.1399 0.6199 1.6935 16 6 4.9527 0.6343 2.5615 17 6 5.8241 0.0454 3.6760 18 6 5.1446 -1.0192 4.4981 19 1 5.2633 -2.0606 4.2377 20 6 4.3712 -0.6638 5.5829 21 7 4.2270 0.6042 5.9004 22 14 3.5295 -1.9834 6.6025 23 1 4.5530 -2.8948 7.1746 24 1 2.7645 -1.3453 7.7037 25 1 2.6026 -2.7593 5.7399 26 6 6.6501 -0.4978 2.5017 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0470 -0.9354 -0.0004 31 1 1.6320 2.0870 -0.0004 32 1 3.8598 4.0553 -1.1387 33 1 2.6927 3.6803 0.1705 34 1 4.5813 5.5675 0.5949 35 1 4.2322 4.3772 1.8919 36 1 5.9131 4.0391 -1.5462 37 1 7.5450 3.4888 -0.8869 38 1 4.5883 1.6376 2.7818 39 1 4.1625 -0.0379 2.2272 40 1 6.3405 0.7934 4.2775 41 1 3.6827 0.8544 6.6633 42 1 6.3165 -1.4746 2.1515 43 1 7.7261 -0.4556 2.6705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268871682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:05 Heat of formation + Delta-G solvation = 35.437924 kcal Electronic energy + Delta-G solvation = -26191.560709 eV Core-core repulsion = 22626.289400 eV Total energy + Delta-G solvation = -3565.271308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87461 -38.71120 -38.31919 -36.66508 -34.37403 -32.87201 -32.60678 -30.39809 -28.99734 -27.95721 -25.44655 -24.85318 -24.28808 -23.38298 -21.61406 -20.41395 -19.70837 -18.83221 -17.99720 -17.18994 -16.67054 -16.24502 -15.76702 -15.01885 -14.90633 -14.66421 -14.46515 -14.05005 -13.71188 -13.61408 -13.36746 -13.08586 -12.95283 -12.70645 -12.43633 -12.34266 -12.12225 -11.89423 -11.50403 -11.31741 -11.14911 -11.11923 -10.88492 -10.80406 -10.56429 -10.43731 -10.26843 -9.66654 -9.50797 -9.31840 -9.11123 -8.91769 -8.52038 -8.34174 -7.62949 -6.13080 -4.17032 1.45893 2.60787 3.20876 3.27897 3.32146 3.35339 3.47529 3.61336 3.93744 4.32168 4.37043 4.53733 4.73677 4.86270 4.89702 4.99299 5.03064 5.16654 5.17946 5.30416 5.45624 5.48453 5.52116 5.58444 5.66473 5.75365 5.80079 6.00871 6.08346 6.15785 6.18223 6.32938 6.42207 6.44879 6.55220 6.55903 6.76640 6.81109 6.95842 7.61845 7.63820 7.85292 8.26766 8.37203 8.68055 8.85771 8.93124 9.48380 10.96909 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.005952 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.613391 B = 4703.113583 C = 5825.474210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 C -0.218 4.218 4 C 0.561 3.439 5 O -0.514 6.514 6 N -0.583 5.583 7 C 0.096 3.904 8 C -0.106 4.106 9 C -0.155 4.155 10 H 0.124 0.876 11 C -0.125 4.125 12 C 0.067 3.933 13 C 0.585 3.415 14 O -0.565 6.565 15 N -0.616 5.616 16 C 0.113 3.887 17 C 0.032 3.968 18 C -0.512 4.512 19 H 0.062 0.938 20 C 0.068 3.932 21 N -0.888 5.888 22 Si 0.894 3.106 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.105 3.895 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 9.205 -11.026 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 C -0.238 4.238 4 C 0.353 3.647 5 O -0.390 6.390 6 N -0.317 5.317 7 C -0.026 4.026 8 C -0.144 4.144 9 C -0.175 4.175 10 H 0.142 0.858 11 C -0.164 4.164 12 C -0.023 4.023 13 C 0.372 3.628 14 O -0.445 6.445 15 N -0.347 5.347 16 C -0.010 4.010 17 C 0.013 3.987 18 C -0.550 4.550 19 H 0.080 0.920 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.017 4.017 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.405 8.565 -11.336 15.585 hybrid contribution -0.676 -0.462 0.529 0.975 sum -7.081 8.103 -10.807 15.252 Atomic orbital electron populations 1.20998 0.92000 1.03310 1.02623 1.23759 0.96334 0.98677 0.89293 1.22401 0.92348 0.99546 1.09551 1.18295 0.88052 0.82034 0.76318 1.90891 1.69696 1.30033 1.48405 1.48044 1.04269 1.06163 1.73244 1.22639 0.98817 0.81520 0.99644 1.22342 0.92217 0.99171 1.00647 1.23789 0.99095 0.96423 0.98158 0.85758 1.23686 1.01653 0.97410 0.93654 1.21824 0.82626 0.91095 1.06772 1.18138 0.84448 0.82064 0.78112 1.90619 1.26378 1.70137 1.57366 1.49593 1.24101 1.33023 1.27935 1.23461 0.89697 0.99673 0.88177 1.20316 0.92360 0.96068 0.89975 1.20871 1.29860 0.92605 1.11642 0.91970 1.25003 0.96201 0.95414 0.96851 1.69948 1.39165 1.15618 1.27785 0.86620 0.79688 0.81792 0.79724 1.20037 1.21249 1.20101 1.23298 0.98699 0.89798 0.89860 0.90895 0.91214 0.90502 0.85474 0.85870 0.90696 0.89256 0.89450 0.89362 0.87988 0.86500 0.93321 0.90659 0.91685 0.92760 0.90960 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 10.19 36.01 0.37 -0.83 16 2 C -0.06 -0.78 9.84 -36.12 -0.36 -1.14 16 3 C -0.22 -2.96 9.20 -37.81 -0.35 -3.30 16 4 C 0.56 9.93 5.97 -12.67 -0.08 9.86 16 5 O -0.51 -11.32 12.43 5.27 0.07 -11.25 16 6 N -0.58 -9.21 3.12 -156.47 -0.49 -9.70 16 7 C 0.10 1.02 6.51 -2.13 -0.01 1.01 16 8 C -0.11 -1.11 7.01 -24.80 -0.17 -1.28 16 9 C -0.15 -2.09 6.97 -89.14 -0.62 -2.71 16 10 H 0.12 1.71 8.14 -51.93 -0.42 1.28 16 11 C -0.13 -1.67 9.57 -25.44 -0.24 -1.91 16 12 C 0.07 1.16 3.22 -130.74 -0.42 0.74 16 13 C 0.58 13.19 6.48 -10.99 -0.07 13.12 16 14 O -0.56 -14.15 17.51 5.55 0.10 -14.05 16 15 N -0.62 -14.35 2.80 -185.36 -0.52 -14.86 16 16 C 0.11 2.65 5.63 -8.63 -0.05 2.60 16 17 C 0.03 0.81 3.77 -91.39 -0.34 0.46 16 18 C -0.51 -13.72 8.82 -34.44 -0.30 -14.02 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -24.59 13.26 55.43 0.74 -23.86 16 22 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.11 2.49 8.19 -8.50 -0.07 2.42 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.13 1.86 7.49 -52.49 -0.39 1.47 16 31 H 0.12 1.28 6.58 -52.49 -0.35 0.93 16 32 H 0.07 0.65 7.31 -51.93 -0.38 0.27 16 33 H 0.09 0.77 6.51 -51.93 -0.34 0.43 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.09 7.20 -51.93 -0.37 0.71 16 37 H 0.12 1.61 8.04 -51.92 -0.42 1.19 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.88 6.59 -51.93 -0.34 1.54 16 40 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.07 1.72 8.10 -51.93 -0.42 1.30 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -33.84 353.96 -8.97 -42.81 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.36 Total: 3.26 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.82 Total: 6.75 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.27 Total: -48.42 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.16 Total: -25.31 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.84 -8.97 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.249 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds