Wall clock time and date at job start Fri Apr 10 2020 14:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 120.00125 * 2 1 4 4 C 1.47094 * 120.00107 * 180.02562 * 3 2 1 5 5 O 1.21612 * 120.00197 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99988 * 180.02562 * 4 3 2 7 7 C 1.48095 * 126.94554 * 353.99578 * 6 4 3 8 8 C 1.54957 * 103.26010 * 140.71000 * 7 6 4 9 9 C 1.54708 * 102.70391 * 37.55286 * 8 7 6 10 10 H 1.08992 * 117.82030 * 197.49418 * 9 8 7 11 11 C 1.53114 * 117.54991 * 42.06902 * 9 8 7 12 12 C 1.47387 * 126.94469 * 173.68559 * 6 4 3 13 13 C 1.50696 * 117.18015 * 344.53284 * 12 6 4 14 14 O 1.21283 * 119.99869 * 134.61475 * 13 12 6 15 15 N 1.34774 * 120.00058 * 314.60392 * 13 12 6 16 16 C 1.47072 * 136.05519 * 3.88995 * 15 13 12 17 17 C 1.53240 * 88.07961 * 207.19655 * 16 15 13 18 18 C 1.50698 * 114.32464 * 220.46957 * 17 16 15 19 19 H 1.08001 * 120.00268 * 93.75770 * 18 17 16 20 20 C 1.37882 * 120.00310 * 273.75896 * 18 17 16 21 21 N 1.31512 * 119.99558 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00498 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46907 * 59.99751 * 22 20 18 24 24 H 1.48497 * 109.46992 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46832 * 300.00131 * 22 20 18 26 26 C 1.47066 * 136.05839 * 184.24287 * 15 13 12 27 27 H 1.08997 * 109.47231 * 59.99991 * 1 2 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46738 * 299.99750 * 1 2 3 30 30 H 1.08000 * 119.99525 * 180.02562 * 2 1 3 31 31 H 1.08001 * 119.99833 * 359.97438 * 3 2 1 32 32 H 1.08998 * 110.66289 * 259.14849 * 7 6 4 33 33 H 1.09002 * 110.66037 * 22.26636 * 7 6 4 34 34 H 1.09003 * 110.76469 * 155.86072 * 8 7 6 35 35 H 1.08998 * 110.76235 * 279.24414 * 8 7 6 36 36 H 1.09004 * 117.45702 * 15.62579 * 11 9 8 37 37 H 1.09007 * 117.45156 * 160.42854 * 11 9 8 38 38 H 1.08994 * 113.46631 * 321.92662 * 16 15 13 39 39 H 1.09002 * 113.46533 * 92.37059 * 16 15 13 40 40 H 1.08994 * 114.02006 * 87.71361 * 17 16 15 41 41 H 0.96998 * 120.00375 * 179.97438 * 21 20 18 42 42 H 1.08997 * 113.47477 * 267.63440 * 26 15 13 43 43 H 1.09005 * 113.46288 * 38.01863 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1517 -0.0006 5 8 4.2511 0.0985 -0.0006 6 7 4.3169 2.3189 0.0000 7 6 3.7425 3.6784 -0.1227 8 6 4.5893 4.5130 0.8710 9 6 6.0046 3.9120 0.7004 10 1 6.7389 4.1103 1.4810 11 6 6.4727 3.5954 -0.7227 12 6 5.7738 2.5006 0.1291 13 6 6.5725 1.3247 0.6292 14 8 7.6047 1.0126 0.0741 15 7 6.1399 0.6199 1.6935 16 6 4.9527 0.6343 2.5615 17 6 5.8241 0.0454 3.6760 18 6 5.1446 -1.0192 4.4981 19 1 5.2633 -2.0606 4.2377 20 6 4.3712 -0.6638 5.5829 21 7 4.2270 0.6042 5.9004 22 14 3.5295 -1.9834 6.6025 23 1 4.5530 -2.8948 7.1746 24 1 2.7645 -1.3453 7.7037 25 1 2.6026 -2.7593 5.7399 26 6 6.6501 -0.4978 2.5017 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0470 -0.9354 -0.0004 31 1 1.6320 2.0870 -0.0004 32 1 3.8598 4.0553 -1.1387 33 1 2.6927 3.6803 0.1705 34 1 4.5813 5.5675 0.5949 35 1 4.2322 4.3772 1.8919 36 1 5.9131 4.0391 -1.5462 37 1 7.5450 3.4888 -0.8869 38 1 4.5883 1.6376 2.7818 39 1 4.1625 -0.0379 2.2272 40 1 6.3405 0.7934 4.2775 41 1 3.6827 0.8544 6.6633 42 1 6.3165 -1.4746 2.1515 43 1 7.7261 -0.4556 2.6705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268871682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:04 Heat of formation + Delta-G solvation = 13.907061 kcal Electronic energy + Delta-G solvation = -26192.494357 eV Core-core repulsion = 22626.289400 eV Total energy + Delta-G solvation = -3566.204957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18222 -40.44132 -39.65032 -38.44879 -35.38557 -34.68400 -34.01175 -31.64926 -30.65521 -28.89226 -27.35083 -26.81123 -25.27611 -24.72029 -23.08797 -21.43021 -21.40872 -20.01385 -19.38278 -18.91879 -18.47456 -17.63645 -17.25832 -16.63269 -16.34938 -16.20832 -16.07609 -15.43021 -15.08978 -14.87235 -14.54326 -14.24132 -14.09790 -13.94561 -13.85475 -13.67080 -13.32477 -13.27389 -13.11162 -12.95429 -12.79046 -12.65510 -12.39180 -12.21827 -12.06363 -11.74428 -11.64135 -11.33757 -11.13997 -10.97695 -10.73801 -10.55830 -10.34151 -9.61706 -9.42712 -8.20001 -6.31508 0.38150 1.21575 1.44466 1.45754 1.53756 1.92170 1.97624 2.20159 2.43224 2.71130 3.08433 3.24911 3.37304 3.56453 3.75441 3.86252 3.99338 4.12136 4.15474 4.31691 4.34414 4.37574 4.49673 4.55650 4.60075 4.62523 4.66943 4.73832 4.79426 4.82032 4.83028 4.92294 4.99103 5.02974 5.06859 5.18583 5.23369 5.44470 5.50864 5.59288 5.75326 6.18680 6.48485 6.73873 6.87088 7.07811 7.16537 7.37376 8.90169 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.005952 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.613391 B = 4703.113583 C = 5825.474210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 C -0.225 4.225 4 C 0.544 3.456 5 O -0.579 6.579 6 N -0.582 5.582 7 C 0.091 3.909 8 C -0.097 4.097 9 C -0.135 4.135 10 H 0.116 0.884 11 C -0.097 4.097 12 C 0.014 3.986 13 C 0.573 3.427 14 O -0.602 6.602 15 N -0.620 5.620 16 C 0.144 3.856 17 C 0.029 3.971 18 C -0.534 4.534 19 H 0.058 0.942 20 C 0.026 3.974 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.270 1.270 26 C 0.105 3.895 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.267 0.733 42 H 0.065 0.935 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 11.569 -11.634 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.246 4.246 4 C 0.338 3.662 5 O -0.459 6.459 6 N -0.315 5.315 7 C -0.029 4.029 8 C -0.134 4.134 9 C -0.155 4.155 10 H 0.134 0.866 11 C -0.136 4.136 12 C -0.075 4.075 13 C 0.363 3.637 14 O -0.485 6.485 15 N -0.351 5.351 16 C 0.021 3.979 17 C 0.009 3.991 18 C -0.572 4.572 19 H 0.076 0.924 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.784 3.216 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.017 4.017 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.181 0.819 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.158 0.842 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.936 10.994 -11.953 18.536 hybrid contribution 0.207 -1.190 0.693 1.392 sum -8.729 9.804 -11.260 17.294 Atomic orbital electron populations 1.21037 0.88660 1.04302 1.04159 1.23977 0.98605 0.97344 0.88072 1.22538 0.90025 1.01407 1.10601 1.19121 0.89755 0.81810 0.75528 1.90850 1.71091 1.32343 1.51661 1.48206 1.03528 1.07736 1.72056 1.23086 0.99943 0.78382 1.01467 1.22418 0.89430 1.01389 1.00177 1.24013 1.00725 0.92652 0.98134 0.86625 1.23819 1.01302 0.93747 0.94683 1.21859 0.83726 0.90524 1.11417 1.19170 0.84444 0.82998 0.77040 1.90568 1.28214 1.71591 1.58114 1.49661 1.23732 1.33041 1.28627 1.22953 0.89012 0.98695 0.87230 1.20186 0.92962 0.95652 0.90254 1.21087 1.30711 0.92718 1.12635 0.92364 1.25736 0.96518 0.97557 0.97670 1.70041 1.39583 1.17224 1.28265 0.85595 0.78676 0.79131 0.78196 1.19629 1.20320 1.19546 1.23158 0.98740 0.90038 0.89810 0.88330 0.90681 0.89512 0.88671 0.81903 0.87602 0.86736 0.85072 0.90646 0.84179 0.87450 0.93551 0.92292 0.93870 0.92411 0.91716 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 10.19 71.24 0.73 -1.22 16 2 C -0.06 -1.51 9.84 24.52 0.24 -1.27 16 3 C -0.23 -5.82 9.20 23.43 0.22 -5.61 16 4 C 0.54 19.41 5.97 86.57 0.52 19.92 16 5 O -0.58 -26.91 12.43 -4.07 -0.05 -26.96 16 6 N -0.58 -17.64 3.12 -767.20 -2.40 -20.03 16 7 C 0.09 1.54 6.51 86.74 0.56 2.11 16 8 C -0.10 -1.63 7.01 31.85 0.22 -1.41 16 9 C -0.14 -3.36 6.97 -9.84 -0.07 -3.43 16 10 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 11 C -0.10 -2.35 9.57 31.43 0.30 -2.05 16 12 C 0.01 0.50 3.22 3.82 0.01 0.51 16 13 C 0.57 26.90 6.48 87.66 0.57 27.47 16 14 O -0.60 -31.58 17.51 -3.04 -0.05 -31.63 16 15 N -0.62 -30.43 2.80 -858.76 -2.40 -32.83 16 16 C 0.14 7.10 5.63 83.10 0.47 7.57 16 17 C 0.03 1.52 3.77 -11.29 -0.04 1.48 16 18 C -0.53 -29.53 8.82 25.60 0.23 -29.30 16 19 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 20 C 0.03 1.40 5.46 84.66 0.46 1.86 16 21 N -0.91 -51.01 13.26 21.45 0.28 -50.73 16 22 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 C 0.11 5.28 8.19 83.19 0.68 5.96 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 2.99 7.49 -2.91 -0.02 2.97 16 31 H 0.16 2.75 6.58 -2.91 -0.02 2.73 16 32 H 0.11 1.21 7.31 -2.39 -0.02 1.19 16 33 H 0.11 1.39 6.51 -2.39 -0.02 1.37 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.14 2.32 7.20 -2.38 -0.02 2.30 16 37 H 0.11 2.83 8.04 -2.38 -0.02 2.81 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 3.11 6.59 -2.39 -0.02 3.09 16 40 H 0.04 2.45 8.11 -2.39 -0.02 2.43 16 41 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.06 3.30 8.10 -2.39 -0.02 3.28 16 43 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -79.18 353.96 3.51 -75.67 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.01 Total: 19.62 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 5.09 Total: 22.59 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.51 Total: -103.59 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.10 Total: -58.59 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -79.18 3.51 -75.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.580 kcal (2) G-P(sol) polarization free energy of solvation -79.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds