Wall clock time and date at job start Fri Apr 10 2020 14:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.43194 * 179.97438 * 164.86136 * 3 2 1 5 5 O 1.21615 * 120.00348 * 19.59698 * 4 3 2 6 6 N 1.34780 * 120.00010 * 199.58732 * 4 3 2 7 7 C 1.47140 * 125.73020 * 359.97438 * 6 4 3 8 8 C 1.56793 * 107.45774 * 179.61892 * 7 6 4 9 9 C 1.55428 * 101.87884 * 338.00120 * 8 7 6 10 10 H 1.08991 * 111.54121 * 154.08593 * 9 8 7 11 11 C 1.46913 * 125.73766 * 180.02562 * 6 4 3 12 12 H 1.08994 * 109.82451 * 84.83814 * 11 6 4 13 13 C 1.52320 * 110.84670 * 323.08460 * 11 6 4 14 14 C 1.54508 * 108.41604 * 307.99516 * 13 11 6 15 15 C 1.50309 * 108.64529 * 306.36940 * 14 13 11 16 16 O 1.21284 * 118.57122 * 203.20990 * 15 14 13 17 17 N 1.33124 * 122.85531 * 22.93581 * 15 14 13 18 18 C 1.46499 * 117.26326 * 179.84001 * 17 15 14 19 19 C 1.53006 * 109.46881 * 90.00450 * 18 17 15 20 20 C 1.50704 * 109.47071 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99959 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99737 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00472 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00026 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46881 * 59.99544 * 24 22 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46767 * 299.99913 * 24 22 20 28 28 H 1.08998 * 109.46811 * 175.54677 * 1 2 3 29 29 H 1.08997 * 109.47293 * 295.54569 * 1 2 3 30 30 H 1.09001 * 109.46967 * 55.55242 * 1 2 3 31 31 H 1.09000 * 109.89386 * 299.05334 * 7 6 4 32 32 H 1.09002 * 109.89126 * 60.08427 * 7 6 4 33 33 H 1.09004 * 111.62957 * 219.83401 * 8 7 6 34 34 H 1.08995 * 110.85346 * 95.82654 * 8 7 6 35 35 H 1.09006 * 109.46716 * 66.88653 * 13 11 6 36 36 H 1.09003 * 109.46829 * 186.87324 * 13 11 6 37 37 H 1.09001 * 108.56458 * 187.33961 * 14 13 11 38 38 H 1.08992 * 110.99858 * 66.85371 * 14 13 11 39 39 H 1.09003 * 109.46874 * 209.99217 * 18 17 15 40 40 H 1.08999 * 109.47787 * 329.99965 * 18 17 15 41 41 H 1.09008 * 109.46798 * 299.99249 * 19 18 17 42 42 H 1.08999 * 109.47307 * 59.99220 * 19 18 17 43 43 H 0.97001 * 120.00753 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 -0.0002 5 8 4.6869 -0.9899 -0.3535 6 7 4.7510 1.1021 0.3911 7 6 4.1451 2.3654 0.8403 8 6 5.3144 3.3462 1.1996 9 6 6.4890 2.3621 1.4595 10 1 7.4545 2.8350 1.2800 11 6 6.2126 1.2419 0.4396 12 1 6.5888 1.5332 -0.5410 13 6 6.8673 -0.0600 0.8831 14 6 6.1948 -0.5223 2.1951 15 6 6.2527 0.6048 3.1878 16 8 6.1823 0.3411 4.3695 17 7 6.3831 1.8794 2.8266 18 6 6.4225 2.8795 3.8964 19 6 7.8716 3.0997 4.3355 20 6 7.9122 4.1289 5.4356 21 1 6.9962 4.5810 5.7862 22 6 9.1188 4.4933 5.9944 23 7 10.2342 3.9423 5.5679 24 14 9.1693 5.7696 7.3576 25 1 8.3684 5.2915 8.5131 26 1 10.5755 5.9823 7.7847 27 1 8.6040 7.0489 6.8589 28 1 -0.3633 -1.0246 -0.0798 29 1 -0.3634 0.4431 0.9272 30 1 -0.3633 0.5813 -0.8475 31 1 3.5388 2.7910 0.0407 32 1 3.5266 2.1879 1.7201 33 1 5.0918 3.9257 2.0956 34 1 5.5410 4.0038 0.3604 35 1 6.7165 -0.8215 0.1178 36 1 7.9353 0.1017 1.0291 37 1 6.7454 -1.3789 2.5841 38 1 5.1559 -0.8036 2.0234 39 1 6.0069 3.8187 3.5312 40 1 5.8353 2.5276 4.7446 41 1 8.2873 2.1605 4.7007 42 1 8.4588 3.4515 3.4873 43 1 11.0831 4.1989 5.9608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269204228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:07 Heat of formation + Delta-G solvation = -7.469651 kcal Electronic energy + Delta-G solvation = -25579.651186 eV Core-core repulsion = 22012.519265 eV Total energy + Delta-G solvation = -3567.131920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32487 -39.22053 -37.46735 -34.94632 -34.64759 -33.62025 -32.86697 -31.10592 -29.49081 -28.90738 -28.34866 -25.11697 -24.75197 -23.29897 -22.02931 -21.65863 -20.49924 -18.22158 -17.82104 -17.09643 -16.34071 -16.19972 -16.10927 -15.50759 -15.04239 -14.85636 -14.42305 -14.28874 -14.10118 -14.04141 -13.71355 -13.57084 -13.36492 -12.79576 -12.63695 -12.55298 -12.28599 -12.01871 -11.73224 -11.35317 -11.22786 -11.02732 -10.92116 -10.87669 -10.68714 -10.66409 -10.58101 -10.15679 -9.85947 -9.82445 -9.32016 -9.01352 -8.86203 -8.34603 -8.06425 -6.00225 -4.03269 1.33832 1.99895 2.72689 3.15266 3.31853 3.33310 3.37940 3.39418 3.47510 3.78861 4.23775 4.29518 4.46573 4.71427 4.80032 4.86851 5.04466 5.06224 5.07043 5.08837 5.12799 5.32032 5.35735 5.36702 5.44767 5.53651 5.67659 5.68143 5.82588 5.88382 5.97600 6.09810 6.19631 6.26851 6.55028 6.83116 6.90291 6.98826 7.18434 7.62659 7.75527 7.85490 8.00439 8.05328 8.37380 8.71543 9.03291 9.60430 11.11193 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.003575 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.173908 B = 7830.822687 C = 8183.794997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.084 4.084 3 C -0.226 4.226 4 C 0.650 3.350 5 O -0.518 6.518 6 N -0.602 5.602 7 C 0.102 3.898 8 C -0.146 4.146 9 C 0.136 3.864 10 H 0.110 0.890 11 C 0.134 3.866 12 H 0.096 0.904 13 C -0.133 4.133 14 C -0.126 4.126 15 C 0.513 3.487 16 O -0.548 6.548 17 N -0.592 5.592 18 C 0.106 3.894 19 C 0.016 3.984 20 C -0.520 4.520 21 H 0.055 0.945 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.021 0.979 42 H 0.014 0.986 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 -3.516 -15.933 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.229 4.229 4 C 0.440 3.560 5 O -0.396 6.396 6 N -0.335 5.335 7 C -0.021 4.021 8 C -0.185 4.185 9 C 0.031 3.969 10 H 0.127 0.873 11 C 0.031 3.969 12 H 0.114 0.886 13 C -0.171 4.171 14 C -0.167 4.167 15 C 0.301 3.699 16 O -0.426 6.426 17 N -0.324 5.324 18 C -0.015 4.015 19 C -0.021 4.021 20 C -0.559 4.559 21 H 0.073 0.927 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.683 -4.272 -15.517 22.472 hybrid contribution 0.107 0.825 0.722 1.101 sum -15.576 -3.447 -14.796 21.758 Atomic orbital electron populations 1.19129 0.83485 1.04107 1.04069 1.22696 0.93839 0.97657 0.94418 1.20598 0.92421 1.04027 1.05838 1.14158 0.82425 0.81908 0.77535 1.90828 1.68321 1.32512 1.47939 1.48184 1.07262 1.13148 1.64946 1.22497 0.96510 0.83460 0.99606 1.23680 0.93964 0.97062 1.03747 1.21966 0.99581 0.93527 0.81864 0.87281 1.21797 0.79544 0.96433 0.99150 0.88597 1.22046 0.99922 0.96899 0.98218 1.21825 1.02940 0.97435 0.94454 1.19978 0.76484 0.83697 0.89759 1.90729 1.50335 1.83007 1.18516 1.47242 1.71394 1.07212 1.06513 1.21978 1.02017 0.88866 0.88611 1.19322 0.89388 0.97317 0.96110 1.21050 0.92838 1.22707 1.19307 0.92662 1.24988 0.95708 0.96573 0.96979 1.69957 0.97864 1.42897 1.42524 0.86636 0.76957 0.81787 0.82479 1.20189 1.21308 1.20237 0.89199 0.88979 0.89021 0.90987 0.91175 0.87991 0.89156 0.88276 0.89683 0.88624 0.89305 0.91704 0.90653 0.96011 0.96736 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.25 10.32 34.37 0.35 0.11 16 2 C -0.08 -0.80 14.13 -37.12 -0.52 -1.33 16 3 C -0.23 -2.76 12.78 -38.84 -0.50 -3.26 16 4 C 0.65 8.88 6.11 -14.34 -0.09 8.80 16 5 O -0.52 -8.27 14.33 5.26 0.08 -8.20 16 6 N -0.60 -7.22 2.77 -165.56 -0.46 -7.68 16 7 C 0.10 1.03 6.49 -1.64 -0.01 1.02 16 8 C -0.15 -1.48 6.56 -23.39 -0.15 -1.63 16 9 C 0.14 1.76 3.59 -66.73 -0.24 1.52 16 10 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 11 C 0.13 1.57 3.28 -67.53 -0.22 1.35 16 12 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 13 C -0.13 -1.74 5.10 -26.29 -0.13 -1.88 16 14 C -0.13 -1.99 5.53 -27.28 -0.15 -2.14 16 15 C 0.51 9.89 7.43 -11.91 -0.09 9.80 16 16 O -0.55 -13.13 16.17 5.55 0.09 -13.04 16 17 N -0.59 -10.30 2.49 -165.51 -0.41 -10.72 16 18 C 0.11 2.18 4.84 -4.04 -0.02 2.16 16 19 C 0.02 0.43 5.28 -27.88 -0.15 0.28 16 20 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 24 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.13 5.85 -51.93 -0.30 0.82 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.32 6.27 -51.93 -0.33 1.00 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.43 6.08 -51.93 -0.32 1.11 16 39 H 0.06 1.17 5.87 -51.93 -0.30 0.86 16 40 H 0.08 1.72 7.13 -51.93 -0.37 1.34 16 41 H 0.02 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -35.98 350.89 -8.27 -44.25 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.24 Total: -1.71 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.33 Total: 1.42 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.13 Total: -44.67 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.17 Total: -21.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.98 -8.27 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.776 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds