Wall clock time and date at job start Fri Apr 10 2020 14:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.43194 * 179.97438 * 164.86136 * 3 2 1 5 5 O 1.21615 * 120.00348 * 19.59698 * 4 3 2 6 6 N 1.34780 * 120.00010 * 199.58732 * 4 3 2 7 7 C 1.47140 * 125.73020 * 359.97438 * 6 4 3 8 8 C 1.56793 * 107.45774 * 179.61892 * 7 6 4 9 9 C 1.55428 * 101.87884 * 338.00120 * 8 7 6 10 10 H 1.08991 * 111.54121 * 154.08593 * 9 8 7 11 11 C 1.46913 * 125.73766 * 180.02562 * 6 4 3 12 12 H 1.08994 * 109.82451 * 84.83814 * 11 6 4 13 13 C 1.52320 * 110.84670 * 323.08460 * 11 6 4 14 14 C 1.54508 * 108.41604 * 307.99516 * 13 11 6 15 15 C 1.50309 * 108.64529 * 306.36940 * 14 13 11 16 16 O 1.21284 * 118.57122 * 203.20990 * 15 14 13 17 17 N 1.33124 * 122.85531 * 22.93581 * 15 14 13 18 18 C 1.46499 * 117.26326 * 179.84001 * 17 15 14 19 19 C 1.53006 * 109.46881 * 90.00450 * 18 17 15 20 20 C 1.50704 * 109.47071 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99959 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99737 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00472 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00026 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46881 * 59.99544 * 24 22 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46767 * 299.99913 * 24 22 20 28 28 H 1.08998 * 109.46811 * 175.54677 * 1 2 3 29 29 H 1.08997 * 109.47293 * 295.54569 * 1 2 3 30 30 H 1.09001 * 109.46967 * 55.55242 * 1 2 3 31 31 H 1.09000 * 109.89386 * 299.05334 * 7 6 4 32 32 H 1.09002 * 109.89126 * 60.08427 * 7 6 4 33 33 H 1.09004 * 111.62957 * 219.83401 * 8 7 6 34 34 H 1.08995 * 110.85346 * 95.82654 * 8 7 6 35 35 H 1.09006 * 109.46716 * 66.88653 * 13 11 6 36 36 H 1.09003 * 109.46829 * 186.87324 * 13 11 6 37 37 H 1.09001 * 108.56458 * 187.33961 * 14 13 11 38 38 H 1.08992 * 110.99858 * 66.85371 * 14 13 11 39 39 H 1.09003 * 109.46874 * 209.99217 * 18 17 15 40 40 H 1.08999 * 109.47787 * 329.99965 * 18 17 15 41 41 H 1.09008 * 109.46798 * 299.99249 * 19 18 17 42 42 H 1.08999 * 109.47307 * 59.99220 * 19 18 17 43 43 H 0.97001 * 120.00753 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 -0.0002 5 8 4.6869 -0.9899 -0.3535 6 7 4.7510 1.1021 0.3911 7 6 4.1451 2.3654 0.8403 8 6 5.3144 3.3462 1.1996 9 6 6.4890 2.3621 1.4595 10 1 7.4545 2.8350 1.2800 11 6 6.2126 1.2419 0.4396 12 1 6.5888 1.5332 -0.5410 13 6 6.8673 -0.0600 0.8831 14 6 6.1948 -0.5223 2.1951 15 6 6.2527 0.6048 3.1878 16 8 6.1823 0.3411 4.3695 17 7 6.3831 1.8794 2.8266 18 6 6.4225 2.8795 3.8964 19 6 7.8716 3.0997 4.3355 20 6 7.9122 4.1289 5.4356 21 1 6.9962 4.5810 5.7862 22 6 9.1188 4.4933 5.9944 23 7 10.2342 3.9423 5.5679 24 14 9.1693 5.7696 7.3576 25 1 8.3684 5.2915 8.5131 26 1 10.5755 5.9823 7.7847 27 1 8.6040 7.0489 6.8589 28 1 -0.3633 -1.0246 -0.0798 29 1 -0.3634 0.4431 0.9272 30 1 -0.3633 0.5813 -0.8475 31 1 3.5388 2.7910 0.0407 32 1 3.5266 2.1879 1.7201 33 1 5.0918 3.9257 2.0956 34 1 5.5410 4.0038 0.3604 35 1 6.7165 -0.8215 0.1178 36 1 7.9353 0.1017 1.0291 37 1 6.7454 -1.3789 2.5841 38 1 5.1559 -0.8036 2.0234 39 1 6.0069 3.8187 3.5312 40 1 5.8353 2.5276 4.7446 41 1 8.2873 2.1605 4.7007 42 1 8.4588 3.4515 3.4873 43 1 11.0831 4.1989 5.9608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269204228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:06 Heat of formation + Delta-G solvation = -30.798432 kcal Electronic energy + Delta-G solvation = -25580.662797 eV Core-core repulsion = 22012.519265 eV Total energy + Delta-G solvation = -3568.143532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48686 -40.49738 -38.69246 -36.52722 -35.49433 -34.95338 -34.54071 -32.35509 -31.09477 -29.77652 -29.32209 -26.97322 -25.77213 -24.58664 -23.40675 -22.90142 -21.83242 -19.43438 -18.80757 -18.77230 -17.81780 -17.65296 -17.16029 -16.96899 -16.57090 -16.07418 -15.76117 -15.30767 -14.95941 -14.87034 -14.72392 -14.49783 -14.31101 -14.29306 -14.25849 -13.92030 -13.75287 -13.50450 -12.99204 -12.82020 -12.71196 -12.52199 -12.37387 -12.16167 -12.05543 -11.78793 -11.67156 -11.50246 -11.38913 -11.29785 -11.13188 -10.59247 -10.55577 -9.82403 -9.64198 -8.20519 -6.32447 0.48027 1.20406 1.40202 1.44501 1.51619 1.60626 1.87286 2.03621 2.42551 2.45276 2.98167 3.13270 3.31059 3.38228 3.53331 3.67356 3.91145 4.04159 4.18109 4.23567 4.34225 4.37757 4.50615 4.63140 4.66200 4.68013 4.73950 4.76603 4.78462 4.80456 4.93035 4.97504 5.01068 5.01769 5.11319 5.27132 5.28744 5.49888 5.61851 5.84080 6.19627 6.24087 6.26558 6.54558 6.82990 6.89370 7.18371 7.36903 8.91404 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.003575 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.173908 B = 7830.822687 C = 8183.794997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.047 4.047 3 C -0.291 4.291 4 C 0.647 3.353 5 O -0.555 6.555 6 N -0.601 5.601 7 C 0.103 3.897 8 C -0.134 4.134 9 C 0.122 3.878 10 H 0.117 0.883 11 C 0.136 3.864 12 H 0.130 0.870 13 C -0.127 4.127 14 C -0.117 4.117 15 C 0.505 3.495 16 O -0.606 6.606 17 N -0.584 5.584 18 C 0.123 3.877 19 C 0.028 3.972 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.933 5.933 24 Si 0.967 3.033 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.257 1.257 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.049 0.951 41 H -0.031 1.031 42 H 0.005 0.995 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 -1.376 -17.466 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.050 4.050 3 C -0.294 4.294 4 C 0.438 3.562 5 O -0.435 6.435 6 N -0.334 5.334 7 C -0.019 4.019 8 C -0.172 4.172 9 C 0.018 3.982 10 H 0.134 0.866 11 C 0.033 3.967 12 H 0.147 0.853 13 C -0.165 4.165 14 C -0.157 4.157 15 C 0.295 3.705 16 O -0.489 6.489 17 N -0.314 5.314 18 C 0.001 3.999 19 C -0.010 4.010 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.573 5.573 24 Si 0.791 3.209 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.181 1.181 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.067 0.933 41 H -0.013 1.013 42 H 0.023 0.977 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.792 -2.087 -17.100 24.766 hybrid contribution 0.685 0.123 1.181 1.371 sum -17.108 -1.964 -15.919 23.451 Atomic orbital electron populations 1.19514 0.80104 1.05699 1.05898 1.23722 0.94835 0.94914 0.91504 1.20643 0.92752 1.07099 1.08904 1.14386 0.83196 0.81656 0.76996 1.90788 1.69222 1.33688 1.49827 1.48229 1.07294 1.13486 1.64353 1.22605 0.96561 0.82640 1.00113 1.23688 0.92074 0.96558 1.04857 1.22371 1.01490 0.95004 0.79324 0.86555 1.21884 0.79737 0.94940 1.00096 0.85258 1.22015 1.00062 0.97965 0.96464 1.21738 1.03067 0.95940 0.94937 1.20625 0.75466 0.84903 0.89539 1.90692 1.53138 1.84000 1.21027 1.47252 1.70026 1.06091 1.07992 1.21562 0.98113 0.90998 0.89204 1.19131 0.92280 0.94233 0.95313 1.21520 0.93407 1.23078 1.19978 0.91657 1.25982 0.95245 0.98857 0.99646 1.70103 0.98562 1.44535 1.44118 0.85472 0.77073 0.79431 0.78895 1.19866 1.21032 1.18103 0.87643 0.87289 0.86530 0.88174 0.92455 0.88672 0.85465 0.88081 0.89222 0.88939 0.89559 0.88193 0.93255 1.01271 0.97652 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.32 70.18 0.72 0.38 16 2 C -0.05 -0.81 14.13 31.13 0.44 -0.37 16 3 C -0.29 -6.89 12.78 30.01 0.38 -6.51 16 4 C 0.65 17.47 6.11 85.49 0.52 17.99 16 5 O -0.55 -17.92 14.33 -4.08 -0.06 -17.98 16 6 N -0.60 -13.61 2.77 -795.94 -2.20 -15.82 16 7 C 0.10 1.83 6.49 87.59 0.57 2.40 16 8 C -0.13 -2.30 6.56 32.76 0.21 -2.08 16 9 C 0.12 2.96 3.59 46.37 0.17 3.13 16 10 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 11 C 0.14 2.98 3.28 45.02 0.15 3.12 16 12 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.13 -3.32 5.10 30.88 0.16 -3.16 16 14 C -0.12 -3.83 5.53 30.24 0.17 -3.66 16 15 C 0.51 20.39 7.43 87.79 0.65 21.04 16 16 O -0.61 -30.97 16.17 -3.04 -0.05 -31.02 16 17 N -0.58 -20.61 2.49 -796.86 -1.99 -22.60 16 18 C 0.12 5.16 4.84 86.38 0.42 5.57 16 19 C 0.03 1.52 5.28 29.85 0.16 1.68 16 20 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 21 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 22 C 0.00 0.04 5.46 84.65 0.46 0.50 16 23 N -0.93 -57.62 13.29 21.44 0.28 -57.33 16 24 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.82 5.85 -2.38 -0.01 1.81 16 34 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 2.68 6.27 -2.38 -0.01 2.66 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.09 2.90 6.08 -2.39 -0.01 2.88 16 39 H 0.10 3.47 5.87 -2.39 -0.01 3.46 16 40 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 41 H -0.03 -1.99 8.14 -2.38 -0.02 -2.01 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -83.30 350.89 4.45 -78.85 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.02 Total: 10.10 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.42 Total: 9.38 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.90 Total: -95.75 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.11 Total: -49.00 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -83.30 4.45 -78.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.051 kcal (2) G-P(sol) polarization free energy of solvation -83.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds