Wall clock time and date at job start Fri Apr 10 2020 14:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46804 * 179.81105 * 3 2 1 5 5 C 1.46845 * 124.36923 * 89.99934 * 4 3 2 6 6 C 1.54643 * 105.50363 * 163.14439 * 5 4 3 7 7 C 1.53893 * 101.59119 * 24.78757 * 6 5 4 8 8 C 1.53609 * 110.33796 * 95.48399 * 7 6 5 9 9 C 1.55327 * 102.71906 * 143.16974 * 8 7 6 10 10 C 1.54978 * 101.66710 * 325.11019 * 9 8 7 11 11 N 1.46228 * 110.90770 * 215.23723 * 7 6 5 12 12 C 1.34780 * 125.81595 * 60.18649 * 11 7 6 13 13 O 1.21283 * 120.00118 * 0.02562 * 12 11 7 14 14 C 1.50697 * 120.00297 * 180.02562 * 12 11 7 15 15 C 1.52995 * 109.47610 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47610 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00127 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00104 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99903 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47340 * 89.99969 * 20 18 16 22 22 H 1.48504 * 109.46482 * 209.99903 * 20 18 16 23 23 H 1.48497 * 109.46781 * 329.99393 * 20 18 16 24 24 C 1.34661 * 124.36799 * 270.02448 * 4 3 2 25 25 O 1.21280 * 125.07268 * 0.83591 * 24 4 3 26 26 H 4.40643 * 5.51357 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47141 * 59.81263 * 3 2 1 28 28 H 1.09000 * 109.47416 * 299.81037 * 3 2 1 29 29 H 1.08996 * 110.24089 * 44.14041 * 5 4 3 30 30 H 1.09004 * 110.31465 * 282.18951 * 5 4 3 31 31 H 1.08992 * 111.00588 * 266.70812 * 6 5 4 32 32 H 1.08998 * 111.00219 * 142.85919 * 6 5 4 33 33 H 1.09000 * 110.75566 * 24.86544 * 8 7 6 34 34 H 1.08994 * 110.76247 * 261.48540 * 8 7 6 35 35 H 1.09000 * 110.98307 * 83.20502 * 9 8 7 36 36 H 1.09001 * 110.98610 * 207.01107 * 9 8 7 37 37 H 1.09004 * 110.36035 * 155.45231 * 10 9 8 38 38 H 1.09004 * 110.36184 * 277.64931 * 10 9 8 39 39 H 1.09008 * 109.47393 * 300.00699 * 14 12 11 40 40 H 1.09007 * 109.47262 * 60.00349 * 14 12 11 41 41 H 1.09000 * 109.47229 * 300.00306 * 15 14 12 42 42 H 1.09011 * 109.47178 * 59.99859 * 15 14 12 43 43 H 0.97003 * 119.99634 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3821 -0.0046 5 6 3.4096 2.1678 1.2049 6 6 4.2865 3.3525 0.7371 7 6 3.8902 3.4640 -0.7457 8 6 2.7914 4.5220 -0.9266 9 6 3.1699 5.1798 -2.2818 10 6 4.7181 5.1336 -2.2311 11 7 5.0369 3.8554 -1.5643 12 6 6.1887 3.1666 -1.6892 13 8 6.3388 2.1224 -1.0908 14 6 7.2901 3.6940 -2.5722 15 6 8.4773 2.7295 -2.5379 16 6 9.5785 3.2565 -3.4214 17 1 9.4452 4.1866 -3.9539 18 6 10.7563 2.5513 -3.5500 19 7 10.9189 1.4189 -2.9013 20 14 12.1216 3.2050 -4.6447 21 1 13.0207 4.0772 -3.8473 22 1 12.8990 2.0675 -5.1989 23 1 11.5302 3.9896 -5.7582 24 6 3.3862 2.0954 -1.1184 25 8 3.2304 1.6951 -2.2526 26 1 -1.0503 -0.0005 0.0002 27 1 3.0096 -0.5159 -0.8883 28 1 3.0096 -0.5101 0.8917 29 1 3.9504 1.5627 1.9325 30 1 2.4792 2.5353 1.6379 31 1 5.3461 3.1196 0.8419 32 1 4.0331 4.2639 1.2787 33 1 2.8233 5.2539 -0.1196 34 1 1.8093 4.0529 -0.9856 35 1 2.7890 4.5953 -3.1193 36 1 2.8113 6.2080 -2.3303 37 1 5.1312 5.1487 -3.2397 38 1 5.1038 5.9723 -1.6515 39 1 6.9244 3.7832 -3.5952 40 1 7.6066 4.6732 -2.2128 41 1 8.8432 2.6399 -1.5150 42 1 8.1606 1.7504 -2.8975 43 1 11.7477 0.9230 -2.9915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:09 Heat of formation + Delta-G solvation = -6.348236 kcal Electronic energy + Delta-G solvation = -25489.207615 eV Core-core repulsion = 21922.124323 eV Total energy + Delta-G solvation = -3567.083292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.38665 -38.81043 -37.06291 -36.40938 -34.11072 -33.42236 -31.84960 -31.31574 -30.62479 -28.13216 -27.16838 -25.84536 -24.27324 -22.60611 -21.84787 -21.35668 -19.85064 -18.42970 -18.34655 -17.10423 -16.47535 -16.33262 -16.10041 -15.63984 -15.14036 -14.66736 -14.56024 -14.38008 -13.92794 -13.63632 -13.52858 -13.37706 -13.19666 -12.92680 -12.65307 -12.34176 -12.18429 -12.14037 -11.76138 -11.41930 -11.31505 -11.08050 -10.91365 -10.85321 -10.81634 -10.57452 -10.38514 -9.93759 -9.85062 -9.62942 -9.17153 -9.03057 -8.90283 -8.39650 -8.28950 -5.93836 -3.98009 2.21917 2.49578 2.62924 3.15222 3.23762 3.34911 3.37815 3.41244 3.44294 4.16224 4.20644 4.25770 4.39298 4.49381 4.58724 4.78709 4.89379 4.97933 5.12205 5.26785 5.32640 5.39209 5.41156 5.46466 5.50432 5.54558 5.64763 5.69744 5.70809 5.74109 5.94302 6.04031 6.23483 6.27228 6.39507 6.53488 6.90505 7.00794 7.37736 7.76551 7.79604 7.88722 8.09345 8.19327 8.40494 8.72244 9.10077 9.65252 11.17165 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003619 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.021418 B = 7734.108846 C = 8453.686944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C 0.235 3.765 4 N -0.616 5.616 5 C 0.109 3.891 6 C -0.138 4.138 7 C 0.134 3.866 8 C -0.109 4.109 9 C -0.133 4.133 10 C 0.103 3.897 11 N -0.609 5.609 12 C 0.529 3.471 13 O -0.525 6.525 14 C -0.122 4.122 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.531 3.469 25 O -0.511 6.511 26 H 0.217 0.783 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.492 6.801 9.490 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.113 3.887 4 N -0.350 5.350 5 C -0.014 4.014 6 C -0.177 4.177 7 C 0.044 3.956 8 C -0.147 4.147 9 C -0.171 4.171 10 C -0.020 4.020 11 N -0.346 5.346 12 C 0.321 3.679 13 O -0.399 6.399 14 C -0.162 4.162 15 C 0.001 3.999 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.317 3.683 25 O -0.385 6.385 26 H 0.234 0.766 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.227 5.734 9.198 23.835 hybrid contribution 0.512 0.204 -0.508 0.750 sum -20.715 5.938 8.690 23.236 Atomic orbital electron populations 1.24934 0.95882 0.98708 1.01568 1.23717 0.95040 1.01420 1.00059 1.18161 0.83205 0.82558 1.04760 1.48135 1.66128 1.13029 1.07713 1.22091 0.99014 0.92849 0.87429 1.23007 1.02436 0.98408 0.93832 1.20974 0.88893 0.93426 0.92300 1.22511 0.96812 0.96350 0.99058 1.22861 0.95172 1.01599 0.97455 1.22358 0.95168 0.85899 0.98577 1.48543 1.13982 1.24062 1.47967 1.21419 0.81370 0.83415 0.81742 1.90670 1.79750 1.22693 1.46783 1.21857 0.94644 1.02138 0.97542 1.18902 0.89482 0.93678 0.97868 1.21207 0.99837 1.07469 1.27901 0.92603 1.25023 0.98518 0.94911 0.95927 1.70001 1.26032 1.14663 1.42132 0.86588 0.82102 0.78438 0.80809 1.20683 1.21234 1.19868 1.20714 0.76095 0.87128 0.84392 1.90699 1.52125 1.74632 1.21010 0.76572 0.87543 0.87748 0.89976 0.91210 0.88361 0.88923 0.89222 0.90206 0.90112 0.89469 0.89859 0.90985 0.90198 0.90201 0.95848 0.95843 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.20 -2.37 13.68 -37.12 -0.51 -2.88 16 3 C 0.23 2.85 6.41 -6.83 -0.04 2.81 16 4 N -0.62 -8.41 2.90 -175.83 -0.51 -8.92 16 5 C 0.11 1.11 7.36 -2.99 -0.02 1.09 16 6 C -0.14 -1.57 6.19 -25.40 -0.16 -1.73 16 7 C 0.13 1.83 0.72 -132.42 -0.10 1.73 16 8 C -0.11 -1.05 6.08 -25.18 -0.15 -1.20 16 9 C -0.13 -1.26 7.09 -24.45 -0.17 -1.43 16 10 C 0.10 1.19 6.71 -2.37 -0.02 1.18 16 11 N -0.61 -9.64 2.90 -157.39 -0.46 -10.09 16 12 C 0.53 10.86 7.26 -10.99 -0.08 10.78 16 13 O -0.52 -12.62 14.51 5.55 0.08 -12.54 16 14 C -0.12 -2.60 4.66 -27.89 -0.13 -2.73 16 15 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 16 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.53 8.88 5.88 -11.12 -0.07 8.82 16 25 O -0.51 -10.61 17.62 5.56 0.10 -10.51 16 26 H 0.22 1.34 7.80 -54.08 -0.42 0.91 16 27 H 0.11 1.46 7.95 -51.93 -0.41 1.04 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.42 6.74 -51.93 -0.35 1.07 16 32 H 0.09 0.74 7.44 -51.93 -0.39 0.35 16 33 H 0.09 0.61 7.45 -51.93 -0.39 0.23 16 34 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.97 7.50 -51.93 -0.39 0.59 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.62 7.86 -51.92 -0.41 1.21 16 40 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -38.45 362.01 -7.52 -45.98 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.50 Total: -1.39 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.40 Total: 2.14 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.23 Total: -46.04 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.18 Total: -23.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.45 -7.52 -45.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -38.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds