Wall clock time and date at job start Fri Apr 10 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46804 * 179.81105 * 3 2 1 5 5 C 1.46845 * 124.36923 * 89.99934 * 4 3 2 6 6 C 1.54643 * 105.50363 * 163.14439 * 5 4 3 7 7 C 1.53893 * 101.59119 * 24.78757 * 6 5 4 8 8 C 1.53609 * 110.33796 * 95.48399 * 7 6 5 9 9 C 1.55327 * 102.71906 * 143.16974 * 8 7 6 10 10 C 1.54978 * 101.66710 * 325.11019 * 9 8 7 11 11 N 1.46228 * 110.90770 * 215.23723 * 7 6 5 12 12 C 1.34780 * 125.81595 * 60.18649 * 11 7 6 13 13 O 1.21283 * 120.00118 * 0.02562 * 12 11 7 14 14 C 1.50697 * 120.00297 * 180.02562 * 12 11 7 15 15 C 1.52995 * 109.47610 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47610 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00127 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00104 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99903 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47340 * 89.99969 * 20 18 16 22 22 H 1.48504 * 109.46482 * 209.99903 * 20 18 16 23 23 H 1.48497 * 109.46781 * 329.99393 * 20 18 16 24 24 C 1.34661 * 124.36799 * 270.02448 * 4 3 2 25 25 O 1.21280 * 125.07268 * 0.83591 * 24 4 3 26 26 H 4.40643 * 5.51357 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47141 * 59.81263 * 3 2 1 28 28 H 1.09000 * 109.47416 * 299.81037 * 3 2 1 29 29 H 1.08996 * 110.24089 * 44.14041 * 5 4 3 30 30 H 1.09004 * 110.31465 * 282.18951 * 5 4 3 31 31 H 1.08992 * 111.00588 * 266.70812 * 6 5 4 32 32 H 1.08998 * 111.00219 * 142.85919 * 6 5 4 33 33 H 1.09000 * 110.75566 * 24.86544 * 8 7 6 34 34 H 1.08994 * 110.76247 * 261.48540 * 8 7 6 35 35 H 1.09000 * 110.98307 * 83.20502 * 9 8 7 36 36 H 1.09001 * 110.98610 * 207.01107 * 9 8 7 37 37 H 1.09004 * 110.36035 * 155.45231 * 10 9 8 38 38 H 1.09004 * 110.36184 * 277.64931 * 10 9 8 39 39 H 1.09008 * 109.47393 * 300.00699 * 14 12 11 40 40 H 1.09007 * 109.47262 * 60.00349 * 14 12 11 41 41 H 1.09000 * 109.47229 * 300.00306 * 15 14 12 42 42 H 1.09011 * 109.47178 * 59.99859 * 15 14 12 43 43 H 0.97003 * 119.99634 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3821 -0.0046 5 6 3.4096 2.1678 1.2049 6 6 4.2865 3.3525 0.7371 7 6 3.8902 3.4640 -0.7457 8 6 2.7914 4.5220 -0.9266 9 6 3.1699 5.1798 -2.2818 10 6 4.7181 5.1336 -2.2311 11 7 5.0369 3.8554 -1.5643 12 6 6.1887 3.1666 -1.6892 13 8 6.3388 2.1224 -1.0908 14 6 7.2901 3.6940 -2.5722 15 6 8.4773 2.7295 -2.5379 16 6 9.5785 3.2565 -3.4214 17 1 9.4452 4.1866 -3.9539 18 6 10.7563 2.5513 -3.5500 19 7 10.9189 1.4189 -2.9013 20 14 12.1216 3.2050 -4.6447 21 1 13.0207 4.0772 -3.8473 22 1 12.8990 2.0675 -5.1989 23 1 11.5302 3.9896 -5.7582 24 6 3.3862 2.0954 -1.1184 25 8 3.2304 1.6951 -2.2526 26 1 -1.0503 -0.0005 0.0002 27 1 3.0096 -0.5159 -0.8883 28 1 3.0096 -0.5101 0.8917 29 1 3.9504 1.5627 1.9325 30 1 2.4792 2.5353 1.6379 31 1 5.3461 3.1196 0.8419 32 1 4.0331 4.2639 1.2787 33 1 2.8233 5.2539 -0.1196 34 1 1.8093 4.0529 -0.9856 35 1 2.7890 4.5953 -3.1193 36 1 2.8113 6.2080 -2.3303 37 1 5.1312 5.1487 -3.2397 38 1 5.1038 5.9723 -1.6515 39 1 6.9244 3.7832 -3.5952 40 1 7.6066 4.6732 -2.2128 41 1 8.8432 2.6399 -1.5150 42 1 8.1606 1.7504 -2.8975 43 1 11.7477 0.9230 -2.9915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:08 Heat of formation + Delta-G solvation = -33.239268 kcal Electronic energy + Delta-G solvation = -25490.373698 eV Core-core repulsion = 21922.124323 eV Total energy + Delta-G solvation = -3568.249375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.50775 -40.22716 -38.32605 -37.59999 -35.62585 -34.97539 -33.33720 -32.37423 -32.20217 -29.09889 -28.16816 -27.78563 -25.42115 -24.06714 -22.99910 -22.53739 -21.17972 -19.69783 -19.30180 -18.83614 -17.93267 -17.49271 -17.31835 -16.86534 -16.56509 -16.49180 -15.81358 -15.65475 -15.08314 -14.81159 -14.65119 -14.49561 -14.34760 -14.19578 -14.08274 -13.82157 -13.56248 -13.22755 -13.12068 -12.85485 -12.76303 -12.50816 -12.20696 -12.18855 -11.96945 -11.73007 -11.67692 -11.64066 -11.33297 -11.26124 -11.00412 -10.75322 -10.58917 -9.98117 -9.63588 -8.19966 -6.34560 1.23364 1.35400 1.40430 1.43939 1.54862 1.64361 1.78400 2.01549 2.39329 2.42355 3.12776 3.21443 3.34810 3.39377 3.48472 3.72567 3.85511 3.99683 4.09239 4.17915 4.24981 4.39923 4.42494 4.46831 4.52798 4.58052 4.73904 4.80268 4.80859 4.90868 4.93364 4.97343 5.03018 5.08560 5.29095 5.39502 5.42569 5.48059 5.57925 5.81233 5.93412 6.14422 6.42157 6.55745 6.83021 6.99798 7.19237 7.35689 8.92906 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003619 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.021418 B = 7734.108846 C = 8453.686944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.248 4.248 3 C 0.229 3.771 4 N -0.617 5.617 5 C 0.105 3.895 6 C -0.132 4.132 7 C 0.123 3.877 8 C -0.099 4.099 9 C -0.125 4.125 10 C 0.089 3.911 11 N -0.604 5.604 12 C 0.524 3.476 13 O -0.577 6.577 14 C -0.110 4.110 15 C 0.048 3.952 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.256 1.256 24 C 0.511 3.489 25 O -0.572 6.572 26 H 0.254 0.746 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.109 0.891 41 H -0.014 1.014 42 H -0.027 1.027 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.325 10.423 10.280 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.249 4.249 3 C 0.108 3.892 4 N -0.349 5.349 5 C -0.016 4.016 6 C -0.170 4.170 7 C 0.034 3.966 8 C -0.137 4.137 9 C -0.162 4.162 10 C -0.032 4.032 11 N -0.339 5.339 12 C 0.315 3.685 13 O -0.456 6.456 14 C -0.149 4.149 15 C 0.010 3.990 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.800 3.200 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.180 1.180 24 C 0.299 3.701 25 O -0.451 6.451 26 H 0.271 0.729 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.005 0.995 42 H -0.009 1.009 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.117 9.414 10.029 26.900 hybrid contribution 0.975 -0.989 -0.709 1.559 sum -22.142 8.425 9.321 25.458 Atomic orbital electron populations 1.25812 0.96636 0.96360 0.99238 1.23735 0.95303 1.03615 1.02225 1.18166 0.84368 0.82153 1.04487 1.48389 1.64833 1.13448 1.08270 1.22405 1.00729 0.92306 0.86170 1.23049 1.00442 1.00861 0.92692 1.21417 0.89185 0.93023 0.93024 1.22635 0.94938 0.95628 1.00475 1.22871 0.93151 1.03646 0.96574 1.22806 0.97155 0.84611 0.98620 1.48440 1.12978 1.24759 1.47675 1.21116 0.82833 0.83138 0.81442 1.90640 1.81161 1.24925 1.48879 1.21584 0.92997 1.01518 0.98841 1.18643 0.92059 0.93011 0.95285 1.21682 1.00234 1.08196 1.28028 0.90606 1.26172 1.01812 0.94972 0.97522 1.70188 1.27041 1.16464 1.44058 0.85284 0.78079 0.77852 0.78810 1.19265 1.21207 1.17996 1.21469 0.75667 0.88779 0.84213 1.90644 1.54967 1.76157 1.23304 0.72944 0.90689 0.85309 0.89052 0.87368 0.92085 0.84240 0.84891 0.90091 0.92633 0.85127 0.90388 0.87543 0.89093 0.87305 0.99509 1.00865 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 19.25 74.32 1.43 -1.51 16 2 C -0.25 -5.80 13.68 31.13 0.43 -5.37 16 3 C 0.23 5.93 6.41 84.57 0.54 6.47 16 4 N -0.62 -17.22 2.90 -828.66 -2.40 -19.63 16 5 C 0.11 1.98 7.36 86.87 0.64 2.62 16 6 C -0.13 -2.77 6.19 31.46 0.19 -2.57 16 7 C 0.12 3.21 0.72 3.36 0.00 3.22 16 8 C -0.10 -1.53 6.08 31.60 0.19 -1.34 16 9 C -0.12 -1.96 7.09 32.07 0.23 -1.73 16 10 C 0.09 1.84 6.71 86.84 0.58 2.43 16 11 N -0.60 -18.98 2.90 -770.24 -2.23 -21.21 16 12 C 0.52 22.49 7.26 87.66 0.64 23.13 16 13 O -0.58 -30.02 14.51 -3.04 -0.04 -30.06 16 14 C -0.11 -4.82 4.66 29.85 0.14 -4.68 16 15 C 0.05 2.79 4.26 29.85 0.13 2.92 16 16 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 17 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 18 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 19 N -0.94 -60.98 13.29 21.45 0.28 -60.69 16 20 Si 0.98 45.30 29.54 68.60 2.03 47.33 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 C 0.51 17.75 5.88 87.62 0.52 18.27 16 25 O -0.57 -25.52 17.62 -3.03 -0.05 -25.58 16 26 H 0.25 2.22 7.80 -4.40 -0.03 2.18 16 27 H 0.07 2.35 7.95 -2.39 -0.02 2.33 16 28 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.78 6.74 -2.39 -0.02 1.77 16 32 H 0.14 1.55 7.44 -2.39 -0.02 1.54 16 33 H 0.13 0.96 7.45 -2.39 -0.02 0.94 16 34 H 0.08 1.30 7.82 -2.39 -0.02 1.28 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.70 7.50 -2.39 -0.02 1.68 16 38 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.09 3.74 7.86 -2.38 -0.02 3.73 16 40 H 0.11 4.08 8.14 -2.38 -0.02 4.06 16 41 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 42 H -0.03 -1.83 8.10 -2.38 -0.02 -1.85 16 43 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -93.73 362.01 4.92 -88.81 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.99 Total: 10.96 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.35 Total: 10.08 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.35 Total: -101.53 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.10 Total: -55.64 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -93.73 4.92 -88.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.572 kcal (2) G-P(sol) polarization free energy of solvation -93.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds