Wall clock time and date at job start Fri Apr 10 2020 14:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86804 * 119.99967 * 2 1 4 4 H 1.48501 * 109.47390 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47247 * 300.00285 * 3 2 1 6 6 H 1.48500 * 109.46963 * 59.99988 * 3 2 1 7 7 C 1.38795 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00714 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00076 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47067 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00067 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99835 * 180.02562 * 11 10 9 14 14 C 1.39985 * 119.99812 * 184.42156 * 13 11 10 15 15 C 1.39056 * 120.51371 * 325.49282 * 14 13 11 16 16 C 1.38655 * 118.41850 * 180.26286 * 15 14 13 17 17 C 1.38191 * 119.36084 * 359.46234 * 16 15 14 18 18 N 1.31885 * 120.98519 * 0.29626 * 17 16 15 19 19 C 1.32249 * 121.72486 * 359.97438 * 18 17 16 20 20 N 1.39890 * 119.73332 * 179.97438 * 19 18 17 21 21 C 1.34780 * 126.84720 * 335.00170 * 20 19 18 22 22 N 1.30832 * 108.02500 * 179.97438 * 21 20 19 23 23 C 1.33270 * 109.84817 * 359.97438 * 22 21 20 24 24 N 1.30738 * 109.00743 * 359.73748 * 23 22 21 25 25 H 0.96996 * 119.99905 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47291 * 59.99759 * 10 9 7 27 27 H 1.08998 * 109.47310 * 300.00503 * 10 9 7 28 28 H 0.97001 * 120.00568 * 4.41550 * 13 11 10 29 29 H 1.07997 * 120.79102 * 0.02562 * 15 14 13 30 30 H 1.08001 * 120.31759 * 179.73780 * 16 15 14 31 31 H 1.07997 * 119.50553 * 180.27667 * 17 16 15 32 32 H 1.08000 * 125.98558 * 359.94124 * 21 20 19 33 33 H 1.07998 * 125.49908 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8443 -6.3430 -0.0022 14 6 2.3561 -7.6517 -0.0953 15 6 1.1466 -7.9979 0.4970 16 6 0.7068 -9.3079 0.3825 17 6 1.4710 -10.2202 -0.3200 18 7 2.6124 -9.8641 -0.8765 19 6 3.0731 -8.6275 -0.7884 20 7 4.2895 -8.2955 -1.3943 21 6 5.3064 -9.1333 -1.6780 22 7 6.2600 -8.4365 -2.2409 23 6 5.8922 -7.1589 -2.3342 24 7 4.6915 -7.0240 -1.8349 25 1 -0.4850 0.8400 0.0004 26 1 3.1253 -3.7317 0.8874 27 1 3.1239 -3.7309 -0.8924 28 1 3.7992 -6.1851 0.0618 29 1 0.5654 -7.2648 1.0366 30 1 -0.2261 -9.6112 0.8342 31 1 1.1285 -11.2400 -0.4144 32 1 5.3302 -10.1939 -1.4755 33 1 6.4879 -6.3642 -2.7584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063446087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:35 Heat of formation + Delta-G solvation = 92.503332 kcal Electronic energy + Delta-G solvation = -21380.641600 eV Core-core repulsion = 17955.798355 eV Total energy + Delta-G solvation = -3424.843245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 305.069 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.47888 -41.87872 -40.35333 -36.39545 -35.28852 -34.61055 -33.04392 -32.40251 -31.40047 -29.75402 -27.69457 -25.76016 -25.01242 -22.97185 -22.79054 -21.90478 -20.02553 -19.69013 -18.92615 -18.25016 -17.31472 -17.00942 -16.90195 -16.55924 -16.32274 -16.17167 -15.88697 -15.19402 -15.10006 -15.02928 -14.58419 -14.34324 -13.89926 -13.53205 -13.29607 -13.18921 -12.93347 -12.64521 -12.15526 -12.02433 -11.76825 -11.48494 -11.23866 -11.17964 -11.04540 -10.83066 -10.38736 -10.34315 -9.34539 -8.70207 -8.37691 -6.15888 -0.55896 -0.03185 0.67496 0.92176 1.15110 1.36709 1.40338 1.43577 1.55348 1.80532 1.99094 2.23737 2.60037 2.97192 3.11843 3.20510 3.27713 3.42054 3.61998 3.86423 3.98163 4.08563 4.17345 4.18418 4.35239 4.42114 4.80217 4.94306 5.10432 5.12017 5.25480 5.40363 5.44591 5.80016 6.08920 6.17795 6.48896 6.87818 6.91933 7.04344 8.71745 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.003609 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.542977 B = 7755.743582 C = 9111.798397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.135 6.135 10 C -0.127 4.127 11 C 0.542 3.458 12 O -0.534 6.534 13 N -0.645 5.645 14 C 0.102 3.898 15 C -0.083 4.083 16 C -0.134 4.134 17 C 0.118 3.882 18 N -0.482 5.482 19 C 0.309 3.691 20 N -0.339 5.339 21 C 0.294 3.706 22 N -0.557 5.557 23 C 0.217 3.783 24 N -0.346 5.346 25 H 0.272 0.728 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.421 0.579 29 H 0.144 0.856 30 H 0.184 0.816 31 H 0.217 0.783 32 H 0.255 0.745 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.285 -22.156 0.440 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.092 5.908 10 C -0.278 4.278 11 C 0.330 3.670 12 O -0.410 6.410 13 N -0.292 5.292 14 C 0.002 3.998 15 C -0.111 4.111 16 C -0.155 4.155 17 C -0.041 4.041 18 N -0.194 5.194 19 C 0.080 3.920 20 N -0.125 5.125 21 C -0.001 4.001 22 N -0.283 5.283 23 C -0.086 4.086 24 N -0.172 5.172 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.260 0.740 29 H 0.162 0.838 30 H 0.201 0.799 31 H 0.233 0.767 32 H 0.270 0.730 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 7.600 -22.363 -0.110 23.619 hybrid contribution 1.441 1.997 0.381 2.492 sum 9.041 -20.366 0.271 22.284 Atomic orbital electron populations 1.70168 1.07902 1.28638 1.47925 1.26087 0.95951 1.03197 0.93617 0.84920 0.78609 0.76384 0.78138 1.18135 1.19939 1.19796 1.23236 0.95397 0.91958 1.59021 0.89953 1.85464 1.09460 0.98852 1.97057 1.23318 1.04171 0.93375 1.06972 1.20236 0.86048 0.86450 0.74270 1.90669 1.16540 1.85561 1.48234 1.43282 1.11336 1.02608 1.71990 1.18499 0.97288 0.85060 0.98993 1.21927 0.94042 0.98420 0.96739 1.22604 1.02529 0.91289 0.99053 1.23312 0.86932 1.02082 0.91805 1.66990 1.16900 1.14606 1.20917 1.17510 0.87281 0.91294 0.95923 1.47500 1.12628 1.07374 1.44951 1.27003 0.81662 1.00150 0.91281 1.70763 1.29760 1.04443 1.23320 1.26944 0.90685 0.95349 0.95578 1.78229 1.16864 0.99514 1.22637 0.91905 0.86918 0.87307 0.73984 0.83838 0.79912 0.76660 0.72952 0.73030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.20 13.22 21.65 0.29 -54.92 16 2 C 0.02 0.93 5.49 84.86 0.47 1.40 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.33 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.14 -7.39 20.57 -56.49 -1.16 -8.56 16 10 C -0.13 -5.11 6.16 71.24 0.44 -4.68 16 11 C 0.54 20.37 7.71 87.66 0.68 21.04 16 12 O -0.53 -23.39 13.32 -3.04 -0.04 -23.43 16 13 N -0.65 -19.26 4.50 -302.83 -1.36 -20.62 16 14 C 0.10 2.80 6.33 38.34 0.24 3.04 16 15 C -0.08 -2.05 8.81 22.57 0.20 -1.85 16 16 C -0.13 -2.05 10.10 22.36 0.23 -1.82 16 17 C 0.12 1.55 11.17 84.67 0.95 2.50 16 18 N -0.48 -9.25 10.03 -192.28 -1.93 -11.18 16 19 C 0.31 7.47 7.45 132.90 0.99 8.46 16 20 N -0.34 -8.04 3.70 -195.66 -0.72 -8.76 16 21 C 0.29 5.60 12.36 180.25 2.23 7.83 16 22 N -0.56 -11.77 11.19 -203.70 -2.28 -14.05 16 23 C 0.22 4.48 13.03 180.75 2.35 6.83 16 24 N -0.35 -8.84 10.22 -61.22 -0.63 -9.46 16 25 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 27 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 28 H 0.42 11.25 7.21 -92.71 -0.67 10.59 16 29 H 0.14 4.17 6.29 -2.91 -0.02 4.16 16 30 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.22 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.25 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.25 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -78.86 313.86 4.11 -74.75 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.51 Total: 18.57 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 9.41 Total: 12.33 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -6.63 Total: -118.99 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.16 Total: -8.56 kcal Total: -78.86 4.11 -74.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063446087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.250 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds