Wall clock time and date at job start Fri Apr 10 2020 14:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33609 * 124.42821 * 2 1 4 4 C 1.38030 * 115.08329 * 179.74823 * 3 2 1 5 5 O 1.35784 * 123.46544 * 180.27175 * 4 3 2 6 6 C 1.42894 * 117.00631 * 0.19212 * 5 4 3 7 7 F 1.39899 * 109.47435 * 300.00607 * 6 5 4 8 8 F 1.39907 * 109.47005 * 60.00351 * 6 5 4 9 9 C 1.37269 * 113.05876 * 0.44619 * 4 3 2 10 10 C 1.41715 * 125.47437 * 179.84181 * 9 4 3 11 11 O 1.21774 * 119.99978 * 359.71791 * 10 9 4 12 12 N 1.34777 * 119.99949 * 179.72076 * 10 9 4 13 13 C 1.46506 * 120.00033 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46566 * 324.99334 * 13 12 10 15 15 C 1.52997 * 109.47289 * 84.99600 * 13 12 10 16 16 C 1.50697 * 109.47015 * 205.00057 * 13 12 10 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99815 * 179.97438 * 16 13 12 19 19 N 1.31508 * 119.99915 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99777 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46954 * 59.99790 * 20 18 16 22 22 H 1.48496 * 109.46873 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47158 * 300.00368 * 20 18 16 24 24 S 1.70577 * 124.42413 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47087 * 300.03171 * 1 2 3 27 27 H 1.08998 * 109.46433 * 60.02773 * 1 2 3 28 28 H 1.07997 * 122.45923 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47200 * 180.02562 * 6 5 4 30 30 H 0.96992 * 119.99904 * 359.97438 * 12 10 9 31 31 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 32 32 H 1.09001 * 109.46832 * 60.00146 * 15 13 12 33 33 H 1.09004 * 109.47261 * 300.00128 * 15 13 12 34 34 H 0.97001 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2624 1.1021 0.0000 4 6 3.6244 0.8779 0.0055 5 8 4.5471 1.8740 0.0117 6 6 4.0541 3.2152 0.0168 7 9 3.2762 3.4305 -1.1260 8 9 3.2720 3.4203 1.1586 9 6 3.9498 -0.4556 0.0002 10 6 5.2660 -0.9810 0.0007 11 8 6.2224 -0.2272 0.0010 12 7 5.4592 -2.3148 0.0007 13 6 6.8198 -2.8580 0.0018 14 1 7.4697 -2.2108 -0.5871 15 6 7.3390 -2.9303 1.4392 16 6 6.8095 -4.2400 -0.5988 17 1 5.8821 -4.6709 -0.9461 18 6 7.9840 -4.9544 -0.7048 19 7 9.1133 -4.4295 -0.2823 20 14 7.9710 -6.6679 -1.4486 21 1 7.4663 -6.5982 -2.8435 22 1 9.3504 -7.2179 -1.4488 23 1 7.0860 -7.5495 -0.6455 24 16 2.4713 -1.4071 0.0006 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5143 0.8897 27 1 -0.3632 0.5134 -0.8902 28 1 1.8385 2.0953 -0.0004 29 1 4.8932 3.9108 0.0211 30 1 4.6974 -2.9152 0.0008 31 1 8.3511 -3.3348 1.4400 32 1 6.6890 -3.5775 2.0281 33 1 7.3465 -1.9306 1.8736 34 1 9.9397 -4.9319 -0.3572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095397173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:01 Heat of formation + Delta-G solvation = -154.161725 kcal Electronic energy + Delta-G solvation = -22774.426038 eV Core-core repulsion = 18855.904656 eV Total energy + Delta-G solvation = -3918.521381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.41767 -47.44941 -40.01575 -38.44623 -36.49705 -34.71639 -32.45351 -31.81499 -29.22594 -27.34549 -26.21351 -25.21004 -23.25547 -22.05414 -20.06020 -19.73342 -18.68751 -18.30001 -18.02506 -16.90743 -16.39680 -15.65073 -15.19862 -15.10320 -14.85670 -14.27226 -14.17540 -14.08349 -13.83171 -13.82506 -13.50872 -13.41446 -13.07479 -12.60240 -12.38005 -12.19272 -11.88816 -11.70094 -11.48103 -11.05586 -11.02307 -10.92629 -10.69279 -10.29712 -10.19849 -9.14361 -9.02264 -8.71914 -8.51830 -8.23319 -7.84510 -6.09096 -4.18323 0.51299 1.37178 1.67906 2.27663 2.75411 3.28006 3.33001 3.34365 3.37080 3.92402 4.12567 4.18591 4.40281 4.50132 4.52957 4.96160 5.05245 5.23163 5.24377 5.25668 5.63239 5.70279 5.76284 6.05563 6.77815 6.88272 7.01250 7.19178 7.48185 7.59502 7.72343 7.95163 8.17932 8.66657 8.80580 9.12222 9.48747 10.96967 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.003969 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.837852 B = 7052.941618 C = 7934.717254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.179 4.179 3 C -0.207 4.207 4 C 0.157 3.843 5 O -0.273 6.273 6 C 0.407 3.593 7 F -0.202 7.202 8 F -0.202 7.202 9 C -0.283 4.283 10 C 0.575 3.425 11 O -0.534 6.534 12 N -0.706 5.706 13 C 0.266 3.734 14 H 0.051 0.949 15 C -0.147 4.147 16 C -0.534 4.534 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 S 0.242 5.758 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.183 0.817 30 H 0.383 0.617 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.015 0.985 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 11.720 1.308 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.299 4.299 3 C -0.239 4.239 4 C 0.098 3.902 5 O -0.189 6.189 6 C 0.316 3.684 7 F -0.183 7.183 8 F -0.184 7.184 9 C -0.403 4.403 10 C 0.361 3.639 11 O -0.414 6.414 12 N -0.355 5.355 13 C 0.164 3.836 14 H 0.069 0.931 15 C -0.205 4.205 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 S 0.508 5.492 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.167 0.833 29 H 0.199 0.801 30 H 0.216 0.784 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.128 10.626 1.325 19.359 hybrid contribution -0.348 0.592 -0.371 0.781 sum -16.475 11.218 0.953 19.955 Atomic orbital electron populations 1.20408 0.87001 1.03369 1.03475 1.23919 1.01728 0.98059 1.06164 1.20008 0.91306 1.01127 1.11499 1.17986 0.87580 0.87173 0.97433 1.86899 1.32146 1.12421 1.87437 1.23578 0.87125 0.86093 0.71637 1.93088 1.78477 1.94630 1.52144 1.93090 1.78274 1.94787 1.52209 1.23290 0.99403 0.94576 1.23080 1.15618 0.86231 0.83608 0.78489 1.90823 1.41422 1.58165 1.50989 1.46468 1.11642 1.04722 1.72635 1.18759 0.76972 0.93732 0.94093 0.93134 1.22079 1.03728 0.97430 0.97309 1.21174 0.94531 1.00031 1.41526 0.92138 1.24877 0.95222 0.98368 0.95153 1.69894 0.98645 1.37720 1.45803 0.86505 0.77158 0.83726 0.79683 1.20167 1.21133 1.20141 1.83101 0.92091 1.05716 1.68261 0.90901 0.90112 0.90099 0.83337 0.80072 0.78413 0.89081 0.95468 0.96554 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.32 36.01 0.37 -0.27 16 2 C -0.18 -2.08 6.26 -35.93 -0.23 -2.30 16 3 C -0.21 -2.76 8.25 -41.28 -0.34 -3.10 16 4 C 0.16 2.60 6.46 -40.01 -0.26 2.34 16 5 O -0.27 -4.49 9.30 -36.58 -0.34 -4.83 16 6 C 0.41 4.51 5.98 101.05 0.60 5.11 16 7 F -0.20 -2.33 15.83 2.25 0.04 -2.30 16 8 F -0.20 -2.32 15.85 2.25 0.04 -2.29 16 9 C -0.28 -5.10 6.28 -38.61 -0.24 -5.34 16 10 C 0.57 12.82 7.56 -14.93 -0.11 12.71 16 11 O -0.53 -13.79 15.50 -12.40 -0.19 -13.98 16 12 N -0.71 -15.83 5.06 -57.80 -0.29 -16.12 16 13 C 0.27 7.01 2.56 -69.08 -0.18 6.83 16 14 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 15 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 16 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 19 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 S 0.24 3.18 21.92 -107.50 -2.36 0.82 16 25 H 0.07 0.47 8.11 -51.93 -0.42 0.04 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.15 1.76 5.88 -52.49 -0.31 1.45 16 29 H 0.18 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.38 7.53 7.51 -40.82 -0.31 7.22 16 31 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -33.25 314.51 -6.59 -39.85 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.40 Total: 3.29 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.43 Total: -0.44 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.34 Total: -40.61 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.53 Total: -18.81 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.59 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.36 Total: 0.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.25 -6.59 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095397173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.314 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds