Wall clock time and date at job start Fri Apr 10 2020 14:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33609 * 124.42821 * 2 1 4 4 C 1.38030 * 115.08329 * 179.74823 * 3 2 1 5 5 O 1.35784 * 123.46544 * 180.27175 * 4 3 2 6 6 C 1.42894 * 117.00631 * 0.19212 * 5 4 3 7 7 F 1.39899 * 109.47435 * 300.00607 * 6 5 4 8 8 F 1.39907 * 109.47005 * 60.00351 * 6 5 4 9 9 C 1.37269 * 113.05876 * 0.44619 * 4 3 2 10 10 C 1.41715 * 125.47437 * 179.84181 * 9 4 3 11 11 O 1.21774 * 119.99978 * 359.71791 * 10 9 4 12 12 N 1.34777 * 119.99949 * 179.72076 * 10 9 4 13 13 C 1.46506 * 120.00033 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46566 * 324.99334 * 13 12 10 15 15 C 1.52997 * 109.47289 * 84.99600 * 13 12 10 16 16 C 1.50697 * 109.47015 * 205.00057 * 13 12 10 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99815 * 179.97438 * 16 13 12 19 19 N 1.31508 * 119.99915 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99777 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46954 * 59.99790 * 20 18 16 22 22 H 1.48496 * 109.46873 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47158 * 300.00368 * 20 18 16 24 24 S 1.70577 * 124.42413 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47087 * 300.03171 * 1 2 3 27 27 H 1.08998 * 109.46433 * 60.02773 * 1 2 3 28 28 H 1.07997 * 122.45923 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47200 * 180.02562 * 6 5 4 30 30 H 0.96992 * 119.99904 * 359.97438 * 12 10 9 31 31 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 32 32 H 1.09001 * 109.46832 * 60.00146 * 15 13 12 33 33 H 1.09004 * 109.47261 * 300.00128 * 15 13 12 34 34 H 0.97001 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2624 1.1021 0.0000 4 6 3.6244 0.8779 0.0055 5 8 4.5471 1.8740 0.0117 6 6 4.0541 3.2152 0.0168 7 9 3.2762 3.4305 -1.1260 8 9 3.2720 3.4203 1.1586 9 6 3.9498 -0.4556 0.0002 10 6 5.2660 -0.9810 0.0007 11 8 6.2224 -0.2272 0.0010 12 7 5.4592 -2.3148 0.0007 13 6 6.8198 -2.8580 0.0018 14 1 7.4697 -2.2108 -0.5871 15 6 7.3390 -2.9303 1.4392 16 6 6.8095 -4.2400 -0.5988 17 1 5.8821 -4.6709 -0.9461 18 6 7.9840 -4.9544 -0.7048 19 7 9.1133 -4.4295 -0.2823 20 14 7.9710 -6.6679 -1.4486 21 1 7.4663 -6.5982 -2.8435 22 1 9.3504 -7.2179 -1.4488 23 1 7.0860 -7.5495 -0.6455 24 16 2.4713 -1.4071 0.0006 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5143 0.8897 27 1 -0.3632 0.5134 -0.8902 28 1 1.8385 2.0953 -0.0004 29 1 4.8932 3.9108 0.0211 30 1 4.6974 -2.9152 0.0008 31 1 8.3511 -3.3348 1.4400 32 1 6.6890 -3.5775 2.0281 33 1 7.3465 -1.9306 1.8736 34 1 9.9397 -4.9319 -0.3572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095397173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:01 Heat of formation + Delta-G solvation = -176.490094 kcal Electronic energy + Delta-G solvation = -22775.394268 eV Core-core repulsion = 18855.904656 eV Total energy + Delta-G solvation = -3919.489612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.32136 -48.35052 -41.32014 -40.04908 -37.57491 -36.68634 -34.38409 -32.98153 -31.02219 -28.48157 -27.38831 -27.21759 -24.29448 -23.62660 -21.76861 -21.06032 -20.10748 -19.32933 -18.96339 -18.36057 -17.88218 -17.23992 -16.73567 -16.41702 -16.30376 -15.64911 -15.41735 -15.18648 -15.03299 -14.76711 -14.71009 -14.45847 -14.38792 -14.32699 -13.72967 -13.44889 -13.06987 -13.03955 -12.92004 -12.80819 -12.69743 -12.46186 -12.27496 -12.14192 -12.01630 -11.13417 -10.94362 -10.59099 -9.99726 -9.65300 -9.31101 -8.16947 -6.35221 -0.65601 0.26787 0.63489 1.14355 1.45920 1.48798 1.56606 1.76746 2.27651 2.36098 2.45588 2.62496 3.13268 3.35020 3.62497 3.64105 3.91901 4.13238 4.22451 4.46859 4.72236 4.72972 4.81721 4.90619 4.96339 5.07489 5.16159 5.40766 5.57429 5.63913 5.70787 5.88694 6.07529 6.70126 6.87085 7.29546 7.46244 8.89620 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.003969 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.837852 B = 7052.941618 C = 7934.717254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.145 4.145 3 C -0.228 4.228 4 C 0.165 3.835 5 O -0.307 6.307 6 C 0.405 3.595 7 F -0.203 7.203 8 F -0.203 7.203 9 C -0.351 4.351 10 C 0.575 3.425 11 O -0.585 6.585 12 N -0.705 5.705 13 C 0.272 3.728 14 H 0.000 1.000 15 C -0.132 4.132 16 C -0.550 4.550 17 H 0.073 0.927 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.262 1.262 24 S 0.285 5.715 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.165 0.835 29 H 0.227 0.773 30 H 0.398 0.602 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.009 0.991 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 11.215 1.073 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.266 4.266 3 C -0.259 4.259 4 C 0.105 3.895 5 O -0.224 6.224 6 C 0.315 3.685 7 F -0.185 7.185 8 F -0.185 7.185 9 C -0.471 4.471 10 C 0.364 3.636 11 O -0.469 6.469 12 N -0.354 5.354 13 C 0.169 3.831 14 H 0.017 0.983 15 C -0.191 4.191 16 C -0.588 4.588 17 H 0.091 0.909 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.800 3.200 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.187 1.187 24 S 0.551 5.449 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.182 0.818 29 H 0.243 0.757 30 H 0.232 0.768 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.407 10.122 1.094 21.916 hybrid contribution 0.527 0.884 -0.293 1.070 sum -18.880 11.006 0.800 21.869 Atomic orbital electron populations 1.20684 0.83465 1.05247 1.05245 1.24571 1.03758 0.96787 1.01484 1.20094 0.89864 1.02509 1.13422 1.18439 0.88945 0.86900 0.95236 1.86873 1.33935 1.14432 1.87147 1.24284 0.88316 0.84625 0.71239 1.93077 1.78715 1.94405 1.52321 1.93079 1.78500 1.94561 1.52344 1.22976 0.99378 0.96306 1.28405 1.16101 0.87679 0.82906 0.76868 1.90768 1.43750 1.59068 1.53314 1.46186 1.10574 1.05378 1.73254 1.18387 0.78283 0.92954 0.93475 0.98250 1.21896 1.02788 0.97117 0.97322 1.21480 0.95314 1.00151 1.41861 0.90886 1.25824 0.94649 1.02636 0.95343 1.70050 0.99328 1.39423 1.46700 0.85350 0.77298 0.78448 0.78949 1.19558 1.21039 1.18653 1.82822 0.89338 1.05212 1.67514 0.89061 0.88124 0.88173 0.81769 0.75674 0.76757 0.91118 0.94016 0.97147 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.32 71.24 0.74 -0.19 16 2 C -0.15 -2.93 6.26 24.64 0.15 -2.77 16 3 C -0.23 -5.63 8.25 21.17 0.17 -5.45 16 4 C 0.16 5.46 6.46 21.99 0.14 5.60 16 5 O -0.31 -10.26 9.30 -74.38 -0.69 -10.95 16 6 C 0.40 8.56 5.98 113.37 0.68 9.23 16 7 F -0.20 -4.43 15.83 44.97 0.71 -3.72 16 8 F -0.20 -4.39 15.85 44.97 0.71 -3.68 16 9 C -0.35 -12.84 6.28 22.90 0.14 -12.70 16 10 C 0.58 26.87 7.56 85.10 0.64 27.52 16 11 O -0.59 -32.26 15.50 12.16 0.19 -32.07 16 12 N -0.70 -32.68 5.06 -454.97 -2.30 -34.98 16 13 C 0.27 14.98 2.56 44.24 0.11 15.10 16 14 H 0.00 -0.03 7.58 -2.39 -0.02 -0.04 16 15 C -0.13 -7.07 9.26 71.98 0.67 -6.40 16 16 C -0.55 -30.10 8.73 25.60 0.22 -29.87 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 18 C 0.02 0.86 5.30 84.66 0.45 1.31 16 19 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 20 Si 0.98 42.40 29.54 68.60 2.03 44.42 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 S 0.29 6.98 21.92 -56.49 -1.24 5.74 16 25 H 0.09 0.70 8.11 -2.39 -0.02 0.68 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.16 3.48 5.88 -2.91 -0.02 3.46 16 29 H 0.23 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.40 15.77 7.51 -92.71 -0.70 15.07 16 31 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -76.30 314.51 4.24 -72.06 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.47 Total: 15.11 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.12 Total: 1.36 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -2.06 Total: -88.27 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.50 Total: -43.02 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.42 Total: -7.40 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.24 Total: 5.74 kcal Total: -76.30 4.24 -72.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095397173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.430 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds