Wall clock time and date at job start Fri Apr 10 2020 14:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47373 * 270.00079 * 3 2 1 5 5 H 1.48509 * 109.47011 * 30.00023 * 3 2 1 6 6 H 1.48500 * 109.47314 * 149.99512 * 3 2 1 7 7 C 1.38800 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99605 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.81011 * 99.99854 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46852 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00106 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.39476 * 119.99806 * 175.17240 * 13 11 10 15 15 C 1.39057 * 119.62198 * 185.13449 * 14 13 11 16 16 C 1.38277 * 119.16952 * 179.76955 * 15 14 13 17 17 C 1.39393 * 118.43865 * 0.48905 * 16 15 14 18 18 N 1.40300 * 120.40914 * 179.73151 * 17 16 15 19 19 C 1.34691 * 126.83716 * 185.02134 * 18 17 16 20 20 N 1.30865 * 108.03709 * 179.97438 * 19 18 17 21 21 C 1.33243 * 109.84054 * 0.02562 * 20 19 18 22 22 N 1.30758 * 108.99662 * 359.71439 * 21 20 19 23 23 C 1.38672 * 119.17564 * 359.74901 * 17 16 15 24 24 N 1.31883 * 120.75968 * 0.02562 * 23 17 16 25 25 H 0.97000 * 119.99834 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46631 * 60.00063 * 10 9 7 27 27 H 1.08994 * 109.46946 * 299.99786 * 10 9 7 28 28 H 0.97002 * 120.00009 * 354.88945 * 13 11 10 29 29 H 1.08000 * 120.41470 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.78254 * 180.22472 * 16 15 14 31 31 H 1.08003 * 125.98596 * 0.02562 * 19 18 17 32 32 H 1.08006 * 125.50066 * 179.97438 * 21 20 19 33 33 H 1.08003 * 119.61561 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5022 0.0011 13 7 2.8440 -6.3432 0.0018 14 6 2.3582 -7.6465 0.1040 15 6 3.2516 -8.7067 0.2119 16 6 2.7596 -9.9946 0.3176 17 6 1.3783 -10.1809 0.3013 18 7 0.8344 -11.4705 0.4002 19 6 -0.4660 -11.8080 0.3041 20 7 -0.5598 -13.1050 0.4507 21 6 0.6510 -13.6273 0.6417 22 7 1.5381 -12.6671 0.6132 23 6 0.5484 -9.0760 0.1858 24 7 1.0523 -7.8609 0.0916 25 1 -0.4850 0.8401 -0.0004 26 1 3.1243 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8894 28 1 3.7983 -6.1857 -0.0730 29 1 4.3164 -8.5260 0.2165 30 1 3.4299 -10.8368 0.4063 31 1 -1.2874 -11.1275 0.1349 32 1 0.8655 -14.6753 0.7912 33 1 -0.5229 -9.2121 0.1728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791292753.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:57 Heat of formation + Delta-G solvation = 93.876010 kcal Electronic energy + Delta-G solvation = -20517.476679 eV Core-core repulsion = 17092.692958 eV Total energy + Delta-G solvation = -3424.783721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 305.069 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.36083 -41.87621 -40.13863 -36.51266 -34.93567 -34.57664 -33.37093 -32.38969 -31.43018 -29.44469 -27.66041 -25.58780 -25.28440 -22.92778 -22.79121 -21.59127 -19.97071 -19.47947 -19.15904 -18.08776 -17.01267 -16.89986 -16.86665 -16.64893 -16.49347 -16.16834 -15.42251 -15.17295 -15.06620 -14.86193 -14.64665 -14.33396 -14.16919 -13.69004 -13.16444 -13.08334 -12.89466 -12.65528 -12.61650 -11.74404 -11.44274 -11.36415 -11.22255 -11.13511 -10.96394 -10.82044 -10.31625 -10.25376 -9.11805 -8.66068 -8.34233 -6.12084 -0.53521 0.08171 0.81638 1.05628 1.23024 1.43364 1.44764 1.55893 1.60460 1.87534 1.97969 2.27310 2.70421 3.00406 3.11224 3.28999 3.31666 3.44510 3.54207 3.73190 3.90035 4.04606 4.18648 4.29717 4.49464 4.52511 4.57843 4.80998 4.94120 5.20511 5.34134 5.43233 5.49946 5.82618 6.05791 6.20651 6.80202 6.93688 7.07524 7.21730 8.74805 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.002331 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.929781 B =12010.072527 C =12527.167808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.149 6.149 10 C -0.128 4.128 11 C 0.524 3.476 12 O -0.495 6.495 13 N -0.642 5.642 14 C 0.345 3.655 15 C -0.163 4.163 16 C -0.039 4.039 17 C 0.054 3.946 18 N -0.328 5.328 19 C 0.262 3.738 20 N -0.562 5.562 21 C 0.205 3.795 22 N -0.343 5.343 23 C 0.128 3.872 24 N -0.495 5.495 25 H 0.271 0.729 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.440 0.560 29 H 0.189 0.811 30 H 0.166 0.834 31 H 0.255 0.745 32 H 0.254 0.746 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -23.342 0.476 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.078 5.922 10 C -0.279 4.279 11 C 0.309 3.691 12 O -0.365 6.365 13 N -0.292 5.292 14 C 0.113 3.887 15 C -0.186 4.186 16 C -0.066 4.066 17 C -0.043 4.043 18 N -0.112 5.112 19 C -0.032 4.032 20 N -0.289 5.289 21 C -0.096 4.096 22 N -0.169 5.169 23 C -0.034 4.034 24 N -0.209 5.209 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.281 0.719 29 H 0.206 0.794 30 H 0.184 0.816 31 H 0.271 0.729 32 H 0.269 0.731 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.359 -23.033 0.494 24.185 hybrid contribution 2.157 0.853 0.002 2.320 sum 9.516 -22.180 0.496 24.140 Atomic orbital electron populations 1.70182 1.07979 1.28587 1.48040 1.26126 0.95952 1.03349 0.93825 0.84957 0.78236 0.76069 0.78748 1.19373 1.20545 1.18062 1.23206 0.95447 0.91844 1.58742 0.89600 1.85651 1.10244 0.99262 1.97080 1.23374 1.03851 0.93144 1.07511 1.20419 0.86546 0.86474 0.75622 1.90809 1.16593 1.85107 1.43958 1.43473 1.12085 1.02087 1.71569 1.18936 0.89447 0.85946 0.94343 1.21724 1.02367 0.89625 1.04921 1.21361 0.92753 0.98261 0.94251 1.18701 0.94946 0.81399 1.09261 1.47632 1.06568 1.05138 1.51873 1.26978 0.87803 0.93815 0.94627 1.70695 1.26395 1.07072 1.24703 1.26850 0.85183 1.01645 0.95954 1.78068 1.21429 0.90380 1.27062 1.22714 1.01176 0.84277 0.95215 1.67757 1.14023 1.23359 1.15810 0.92042 0.86514 0.86398 0.71886 0.79425 0.81606 0.72915 0.73067 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.61 29.55 68.60 2.03 44.64 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.54 -30.06 9.50 67.95 0.65 -29.42 16 8 H 0.09 4.35 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 10 C -0.13 -4.63 6.16 71.24 0.44 -4.19 16 11 C 0.52 18.11 7.81 87.66 0.68 18.79 16 12 O -0.49 -22.02 14.12 -3.03 -0.04 -22.07 16 13 N -0.64 -14.76 5.39 -308.38 -1.66 -16.42 16 14 C 0.34 8.06 7.42 132.90 0.99 9.04 16 15 C -0.16 -2.39 9.93 22.48 0.22 -2.17 16 16 C -0.04 -0.62 9.80 22.56 0.22 -0.40 16 17 C 0.05 1.01 6.71 38.17 0.26 1.27 16 18 N -0.33 -6.12 3.82 -190.89 -0.73 -6.85 16 19 C 0.26 4.18 11.99 180.27 2.16 6.34 16 20 N -0.56 -10.43 11.19 -203.74 -2.28 -12.71 16 21 C 0.21 3.31 13.03 180.75 2.35 5.67 16 22 N -0.34 -6.63 12.14 -61.21 -0.74 -7.37 16 23 C 0.13 2.74 10.64 84.79 0.90 3.64 16 24 N -0.50 -14.30 7.88 -192.54 -1.52 -15.82 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 27 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 28 H 0.44 5.70 8.70 -92.71 -0.81 4.90 16 29 H 0.19 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.17 2.16 7.83 -2.91 -0.02 2.14 16 31 H 0.26 1.96 7.15 -2.91 -0.02 1.94 16 32 H 0.25 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.18 2.89 6.84 -2.91 -0.02 2.87 16 Total: -1.00 -84.66 316.73 3.89 -80.77 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.37 Total: 10.13 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 9.34 Total: 9.73 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -6.65 Total: -114.04 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.04 Total: -22.07 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -84.66 3.89 -80.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791292753.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.645 kcal (2) G-P(sol) polarization free energy of solvation -84.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds