Wall clock time and date at job start Fri Apr 10 2020 14:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 115.55306 * 2 1 4 4 C 1.53077 * 117.49488 * 214.27026 * 2 1 3 5 5 C 1.52999 * 59.98459 * 252.51236 * 4 2 1 6 6 C 1.50699 * 117.49847 * 107.49559 * 5 4 2 7 7 O 1.20821 * 120.00570 * 291.25672 * 6 5 4 8 8 O 1.34230 * 119.99577 * 111.25309 * 6 5 4 9 9 C 1.50694 * 117.49935 * 252.49753 * 5 4 2 10 10 O 1.21283 * 120.00363 * 68.74635 * 9 5 4 11 11 N 1.34784 * 119.99988 * 248.74753 * 9 5 4 12 12 S 1.65597 * 120.00046 * 179.72704 * 11 9 5 13 13 O 1.42094 * 104.27774 * 181.06921 * 12 11 9 14 14 O 1.42104 * 104.27669 * 308.92749 * 12 11 9 15 15 C 1.81394 * 104.45113 * 64.99688 * 12 11 9 16 16 C 1.50699 * 109.47506 * 180.02562 * 15 12 11 17 17 H 1.08010 * 119.99826 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00461 * 180.02562 * 16 15 12 19 19 N 1.31519 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47090 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47302 * 119.99876 * 20 18 16 23 23 H 1.48503 * 109.47387 * 240.00411 * 20 18 16 24 24 H 1.08996 * 109.47132 * 274.33011 * 1 2 3 25 25 H 1.09002 * 109.47105 * 34.33219 * 1 2 3 26 26 H 1.09003 * 109.47234 * 154.32952 * 1 2 3 27 27 H 1.08998 * 109.47584 * 205.67247 * 3 2 1 28 28 H 1.09003 * 109.46638 * 325.66859 * 3 2 1 29 29 H 1.08997 * 109.47308 * 85.66934 * 3 2 1 30 30 H 1.08999 * 117.51160 * 145.03651 * 4 2 1 31 31 H 1.08999 * 117.49197 * 0.02562 * 4 2 1 32 32 H 0.96703 * 116.99979 * 180.02562 * 8 6 5 33 33 H 0.97000 * 119.99339 * 0.02562 * 11 9 5 34 34 H 1.09005 * 109.47676 * 299.99883 * 15 12 11 35 35 H 1.09000 * 109.47147 * 60.00010 * 15 12 11 36 36 H 0.96994 * 119.99732 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2367 -1.1221 -0.7646 5 6 2.2365 -1.1207 0.7654 6 6 1.3720 -2.1397 1.4620 7 8 0.1684 -2.0516 1.4043 8 8 1.9392 -3.1453 2.1467 9 6 3.5292 -0.7806 1.4610 10 8 3.9710 0.3474 1.4024 11 7 4.1946 -1.7300 2.1485 12 16 5.6187 -1.3579 2.9073 13 8 6.0343 -2.5839 3.4932 14 8 6.3975 -0.7259 1.9006 15 6 5.1494 -0.1656 4.1913 16 6 6.3760 0.2541 4.9597 17 1 7.3415 -0.1552 4.7011 18 6 6.2658 1.1605 5.9927 19 7 5.0901 1.6585 6.3079 20 14 7.7861 1.6802 6.9455 21 1 8.9763 0.9803 6.3986 22 1 7.9732 3.1477 6.8172 23 1 7.6178 1.3259 8.3778 24 1 -0.3633 0.0776 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3634 -0.9263 -0.4452 27 1 3.1823 1.3087 -0.4452 28 1 1.5810 2.0742 -0.5796 29 1 2.2767 1.7417 1.0247 30 1 3.1719 -0.8770 -1.2680 31 1 1.6113 -1.8596 -1.2677 32 1 1.3438 -3.7746 2.5765 33 1 3.8415 -2.6322 2.1951 34 1 4.6955 0.7095 3.7262 35 1 4.4342 -0.6274 4.8720 36 1 5.0125 2.2959 7.0349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863960837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:47 Heat of formation + Delta-G solvation = -174.883407 kcal Electronic energy + Delta-G solvation = -24192.193901 eV Core-core repulsion = 20383.861475 eV Total energy + Delta-G solvation = -3808.332425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50198 -39.62747 -37.74955 -36.33050 -36.05897 -35.18841 -34.14111 -33.36668 -30.05741 -29.07290 -27.50943 -25.97669 -23.62292 -23.10124 -21.15195 -19.70916 -18.93407 -18.73571 -17.60352 -17.27738 -16.46696 -16.11085 -15.73908 -15.60947 -14.85682 -14.63295 -14.50707 -14.30683 -14.06557 -13.76993 -13.43010 -13.18234 -12.57273 -12.30444 -12.13495 -12.07750 -11.90102 -11.74713 -11.46559 -11.41264 -11.31479 -11.22324 -11.02444 -10.94219 -10.69654 -10.61548 -10.46301 -10.11278 -9.86583 -9.66647 -9.17964 -8.72673 -6.34358 -4.45609 0.99469 1.66936 2.15428 2.59126 3.08755 3.20150 3.27100 3.29393 3.33954 4.03060 4.10414 4.23481 4.38072 4.55933 4.72777 4.90769 4.97192 5.11406 5.19348 5.31881 5.42203 5.54060 5.69554 5.81772 5.90395 5.97631 6.09143 6.29118 6.47876 6.57254 6.74254 7.01448 7.40621 7.52444 7.69835 7.73196 8.55677 9.21920 10.77475 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.004799 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.233717 B = 5833.399986 C = 6158.631849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.115 4.115 4 C -0.117 4.117 5 C -0.186 4.186 6 C 0.525 3.475 7 O -0.495 6.495 8 O -0.514 6.514 9 C 0.577 3.423 10 O -0.472 6.472 11 N -1.051 6.051 12 S 2.553 3.447 13 O -0.967 6.967 14 O -0.952 6.952 15 C -0.404 4.404 16 C -0.534 4.534 17 H 0.071 0.929 18 C 0.077 3.923 19 N -0.877 5.877 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.420 0.580 33 H 0.430 0.570 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 -6.518 -11.840 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.172 4.172 4 C -0.154 4.154 5 C -0.192 4.192 6 C 0.366 3.634 7 O -0.382 6.382 8 O -0.328 6.328 9 C 0.361 3.639 10 O -0.342 6.342 11 N -0.814 5.814 12 S 2.655 3.345 13 O -0.957 6.957 14 O -0.943 6.943 15 C -0.541 4.541 16 C -0.574 4.574 17 H 0.089 0.911 18 C -0.129 4.129 19 N -0.513 5.513 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.281 0.719 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.819 -5.688 -12.258 16.704 hybrid contribution -0.340 -0.576 1.353 1.509 sum -10.160 -6.264 -10.905 16.167 Atomic orbital electron populations 1.21502 0.89773 1.02120 1.03297 1.21935 0.96017 0.91207 0.95794 1.21551 1.00194 0.91479 1.03982 1.23514 1.04259 1.01643 0.86030 1.21408 0.97522 1.02860 0.97404 1.21676 0.86540 0.79575 0.75585 1.90739 1.15392 1.73597 1.58455 1.84268 1.46109 1.38628 1.63794 1.18788 0.83550 0.84377 0.77209 1.90938 1.66562 1.19059 1.57673 1.55614 1.43629 1.21137 1.61042 1.07159 0.73104 0.76966 0.77242 1.93520 1.78827 1.44506 1.78878 1.93526 1.65874 1.77630 1.57246 1.27612 1.07341 1.09967 1.09204 1.20325 0.91057 1.28473 1.17506 0.91051 1.24925 0.96974 0.94760 0.96282 1.69967 1.23283 1.29088 1.28934 0.86274 0.82186 0.78772 0.79452 1.18938 1.20257 1.20316 0.90887 0.91810 0.91550 0.90760 0.91964 0.90276 0.86076 0.86666 0.71877 0.73040 0.88349 0.89711 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 8.09 37.16 0.30 -0.81 16 2 C -0.05 -0.55 2.70 -154.47 -0.42 -0.97 16 3 C -0.12 -1.41 8.09 37.16 0.30 -1.11 16 4 C -0.12 -1.15 9.23 -26.69 -0.25 -1.40 16 5 C -0.19 -2.38 2.56 -156.81 -0.40 -2.78 16 6 C 0.52 6.13 7.84 36.01 0.28 6.41 16 7 O -0.49 -6.28 13.87 -18.75 -0.26 -6.54 16 8 O -0.51 -4.71 10.51 -39.26 -0.41 -5.12 16 9 C 0.58 9.62 7.10 -10.98 -0.08 9.54 16 10 O -0.47 -9.22 11.20 -11.50 -0.13 -9.35 16 11 N -1.05 -17.74 5.42 31.22 0.17 -17.57 16 12 S 2.55 55.81 5.03 -107.50 -0.54 55.27 16 13 O -0.97 -22.31 18.08 -57.54 -1.04 -23.35 16 14 O -0.95 -23.38 17.05 -64.77 -1.10 -24.48 16 15 C -0.40 -10.08 5.64 36.01 0.20 -9.88 16 16 C -0.53 -14.95 9.13 -34.44 -0.31 -15.26 16 17 H 0.07 1.95 7.71 -52.48 -0.40 1.55 16 18 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 19 N -0.88 -25.03 13.29 55.43 0.74 -24.30 16 20 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H 0.07 0.85 7.26 -51.93 -0.38 0.47 16 25 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 26 H 0.07 0.65 7.02 -51.93 -0.36 0.28 16 27 H 0.07 0.97 7.02 -51.93 -0.36 0.61 16 28 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 29 H 0.08 1.14 7.26 -51.93 -0.38 0.77 16 30 H 0.12 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.12 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.42 1.82 9.10 45.56 0.41 2.23 16 33 H 0.43 5.97 5.95 -34.47 -0.21 5.76 16 34 H 0.10 2.54 7.18 -51.92 -0.37 2.17 16 35 H 0.08 2.05 8.14 -51.92 -0.42 1.63 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -35.94 318.05 -6.54 -42.49 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.27 Total: 6.29 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.47 Total: -14.21 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.91 Total: -41.87 kcal Atomic # 8 Polarization: -65.90 SS G_CDS: -2.95 Total: -68.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.54 Total: 55.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.94 -6.54 -42.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863960837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.397 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds