Wall clock time and date at job start Fri Apr 10 2020 14:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 115.55306 * 2 1 4 4 C 1.53077 * 117.49488 * 214.27026 * 2 1 3 5 5 C 1.52999 * 59.98459 * 252.51236 * 4 2 1 6 6 C 1.50699 * 117.49847 * 107.49559 * 5 4 2 7 7 O 1.20821 * 120.00570 * 291.25672 * 6 5 4 8 8 O 1.34230 * 119.99577 * 111.25309 * 6 5 4 9 9 C 1.50694 * 117.49935 * 252.49753 * 5 4 2 10 10 O 1.21283 * 120.00363 * 68.74635 * 9 5 4 11 11 N 1.34784 * 119.99988 * 248.74753 * 9 5 4 12 12 S 1.65597 * 120.00046 * 179.72704 * 11 9 5 13 13 O 1.42094 * 104.27774 * 181.06921 * 12 11 9 14 14 O 1.42104 * 104.27669 * 308.92749 * 12 11 9 15 15 C 1.81394 * 104.45113 * 64.99688 * 12 11 9 16 16 C 1.50699 * 109.47506 * 180.02562 * 15 12 11 17 17 H 1.08010 * 119.99826 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00461 * 180.02562 * 16 15 12 19 19 N 1.31519 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47090 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47302 * 119.99876 * 20 18 16 23 23 H 1.48503 * 109.47387 * 240.00411 * 20 18 16 24 24 H 1.08996 * 109.47132 * 274.33011 * 1 2 3 25 25 H 1.09002 * 109.47105 * 34.33219 * 1 2 3 26 26 H 1.09003 * 109.47234 * 154.32952 * 1 2 3 27 27 H 1.08998 * 109.47584 * 205.67247 * 3 2 1 28 28 H 1.09003 * 109.46638 * 325.66859 * 3 2 1 29 29 H 1.08997 * 109.47308 * 85.66934 * 3 2 1 30 30 H 1.08999 * 117.51160 * 145.03651 * 4 2 1 31 31 H 1.08999 * 117.49197 * 0.02562 * 4 2 1 32 32 H 0.96703 * 116.99979 * 180.02562 * 8 6 5 33 33 H 0.97000 * 119.99339 * 0.02562 * 11 9 5 34 34 H 1.09005 * 109.47676 * 299.99883 * 15 12 11 35 35 H 1.09000 * 109.47147 * 60.00010 * 15 12 11 36 36 H 0.96994 * 119.99732 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2367 -1.1221 -0.7646 5 6 2.2365 -1.1207 0.7654 6 6 1.3720 -2.1397 1.4620 7 8 0.1684 -2.0516 1.4043 8 8 1.9392 -3.1453 2.1467 9 6 3.5292 -0.7806 1.4610 10 8 3.9710 0.3474 1.4024 11 7 4.1946 -1.7300 2.1485 12 16 5.6187 -1.3579 2.9073 13 8 6.0343 -2.5839 3.4932 14 8 6.3975 -0.7259 1.9006 15 6 5.1494 -0.1656 4.1913 16 6 6.3760 0.2541 4.9597 17 1 7.3415 -0.1552 4.7011 18 6 6.2658 1.1605 5.9927 19 7 5.0901 1.6585 6.3079 20 14 7.7861 1.6802 6.9455 21 1 8.9763 0.9803 6.3986 22 1 7.9732 3.1477 6.8172 23 1 7.6178 1.3259 8.3778 24 1 -0.3633 0.0776 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3634 -0.9263 -0.4452 27 1 3.1823 1.3087 -0.4452 28 1 1.5810 2.0742 -0.5796 29 1 2.2767 1.7417 1.0247 30 1 3.1719 -0.8770 -1.2680 31 1 1.6113 -1.8596 -1.2677 32 1 1.3438 -3.7746 2.5765 33 1 3.8415 -2.6322 2.1951 34 1 4.6955 0.7095 3.7262 35 1 4.4342 -0.6274 4.8720 36 1 5.0125 2.2959 7.0349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863960837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:47 Heat of formation + Delta-G solvation = -203.353860 kcal Electronic energy + Delta-G solvation = -24193.428472 eV Core-core repulsion = 20383.861475 eV Total energy + Delta-G solvation = -3809.566997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.53506 -40.76583 -38.74450 -38.11209 -37.08383 -37.03121 -35.62457 -35.43648 -31.15055 -30.98062 -28.39895 -26.94019 -25.65318 -24.30862 -22.16718 -21.04638 -20.28673 -19.73393 -19.19166 -18.62224 -18.29280 -17.56264 -17.12961 -16.86602 -16.46409 -16.21841 -15.97174 -15.57747 -15.05817 -14.71165 -14.53176 -14.47969 -14.15936 -14.06881 -13.64045 -13.49633 -13.23614 -13.13395 -13.02662 -12.92931 -12.76918 -12.64839 -12.57604 -12.31143 -12.08831 -12.02204 -11.81375 -11.53074 -11.15496 -11.08098 -10.83059 -10.80104 -8.44740 -6.64367 -0.79878 0.65535 0.99409 1.36676 1.37866 1.49573 1.52676 1.79897 2.28411 2.33357 2.68841 2.87046 2.90129 3.14651 3.33680 3.50402 3.84344 3.98668 4.04562 4.41965 4.59541 4.60888 4.71234 4.76498 4.85309 5.00979 5.02477 5.06780 5.26885 5.29078 5.45367 5.55433 5.63522 5.69100 6.31206 6.45650 6.87173 7.07825 8.68491 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.004799 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.233717 B = 5833.399986 C = 6158.631849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.053 4.053 3 C -0.114 4.114 4 C -0.090 4.090 5 C -0.205 4.205 6 C 0.531 3.469 7 O -0.506 6.506 8 O -0.513 6.513 9 C 0.571 3.429 10 O -0.504 6.504 11 N -1.037 6.037 12 S 2.597 3.403 13 O -0.977 6.977 14 O -0.979 6.979 15 C -0.421 4.421 16 C -0.567 4.567 17 H 0.069 0.931 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.969 3.031 21 H -0.260 1.260 22 H -0.268 1.268 23 H -0.264 1.264 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.442 0.558 33 H 0.445 0.555 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 -7.499 -12.798 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.054 4.054 3 C -0.171 4.171 4 C -0.127 4.127 5 C -0.211 4.211 6 C 0.373 3.627 7 O -0.394 6.394 8 O -0.330 6.330 9 C 0.358 3.642 10 O -0.377 6.377 11 N -0.806 5.806 12 S 2.697 3.303 13 O -0.968 6.968 14 O -0.969 6.969 15 C -0.555 4.555 16 C -0.606 4.606 17 H 0.087 0.913 18 C -0.178 4.178 19 N -0.545 5.545 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.188 1.188 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.166 0.834 32 H 0.307 0.693 33 H 0.288 0.712 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.429 -6.704 -13.187 18.100 hybrid contribution -0.227 -0.301 1.604 1.648 sum -10.656 -7.005 -11.582 17.227 Atomic orbital electron populations 1.21463 0.88489 1.03458 1.02567 1.22062 0.96809 0.90635 0.95918 1.21497 1.00285 0.92969 1.02354 1.23763 1.04513 1.00750 0.83657 1.21414 0.95695 1.04802 0.99198 1.21367 0.86065 0.79705 0.75567 1.90744 1.15584 1.74052 1.58999 1.84179 1.46777 1.38562 1.63457 1.19507 0.84538 0.83597 0.76577 1.90936 1.67636 1.20390 1.58725 1.55145 1.42567 1.22299 1.60546 1.05554 0.73307 0.75513 0.75934 1.93496 1.79761 1.44171 1.79324 1.93488 1.67544 1.78286 1.57588 1.27664 1.06422 1.10834 1.10627 1.20751 0.92000 1.29293 1.18556 0.91278 1.25890 1.00202 0.94563 0.97163 1.70049 1.25263 1.29577 1.29596 0.85333 0.78357 0.78714 0.78482 1.18408 1.19307 1.18824 0.92725 0.89864 0.90686 0.92051 0.89356 0.93319 0.85579 0.83417 0.69271 0.71154 0.90150 0.89864 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 8.09 71.98 0.58 -1.28 16 2 C -0.05 -1.13 2.70 -52.16 -0.14 -1.27 16 3 C -0.11 -2.77 8.09 71.98 0.58 -2.19 16 4 C -0.09 -1.51 9.23 30.62 0.28 -1.23 16 5 C -0.20 -4.95 2.56 -53.68 -0.14 -5.09 16 6 C 0.53 11.38 7.84 71.24 0.56 11.94 16 7 O -0.51 -11.80 13.87 21.98 0.30 -11.49 16 8 O -0.51 -8.27 10.51 -51.42 -0.54 -8.81 16 9 C 0.57 19.00 7.10 87.65 0.62 19.62 16 10 O -0.50 -20.29 11.20 13.27 0.15 -20.14 16 11 N -1.04 -34.59 5.42 -173.53 -0.94 -35.53 16 12 S 2.60 114.56 5.03 -56.49 -0.28 114.28 16 13 O -0.98 -44.73 18.08 -127.65 -2.31 -47.04 16 14 O -0.98 -48.60 17.05 -120.74 -2.06 -50.66 16 15 C -0.42 -21.69 5.64 71.24 0.40 -21.29 16 16 C -0.57 -32.47 9.13 25.60 0.23 -32.24 16 17 H 0.07 3.86 7.71 -2.91 -0.02 3.84 16 18 C 0.03 1.42 5.46 84.65 0.46 1.88 16 19 N -0.91 -52.81 13.29 21.45 0.28 -52.53 16 20 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H 0.05 1.20 7.26 -2.39 -0.02 1.18 16 25 H 0.08 1.16 7.92 -2.39 -0.02 1.15 16 26 H 0.07 1.23 7.02 -2.39 -0.02 1.21 16 27 H 0.06 1.62 7.02 -2.39 -0.02 1.61 16 28 H 0.09 1.61 7.92 -2.39 -0.02 1.59 16 29 H 0.05 1.47 7.26 -2.39 -0.02 1.45 16 30 H 0.13 2.04 8.05 -2.39 -0.02 2.02 16 31 H 0.15 1.56 8.05 -2.39 -0.02 1.54 16 32 H 0.44 2.69 9.10 -74.06 -0.67 2.02 16 33 H 0.45 11.76 5.95 -96.74 -0.58 11.19 16 34 H 0.08 4.38 7.18 -2.39 -0.02 4.36 16 35 H 0.08 4.19 8.14 -2.39 -0.02 4.17 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -78.25 318.05 -0.02 -78.27 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.10 Total: 19.57 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.45 Total: -31.15 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -0.65 Total: -88.05 kcal Atomic # 8 Polarization: -133.69 SS G_CDS: -4.45 Total: -138.14 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 114.56 SS G_CDS: -0.28 Total: 114.28 kcal Total: -78.25 -0.02 -78.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863960837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.081 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds