Wall clock time and date at job start Fri Apr 10 2020 14:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 115.56216 * 2 1 4 4 C 1.53077 * 117.50998 * 214.29458 * 2 1 3 5 5 C 1.52994 * 59.98404 * 252.52496 * 4 2 1 6 6 C 1.50700 * 117.49919 * 252.50323 * 5 4 2 7 7 O 1.20826 * 120.00387 * 68.74216 * 6 5 4 8 8 O 1.34234 * 120.00077 * 248.75009 * 6 5 4 9 9 C 1.50700 * 117.50070 * 107.50673 * 5 4 2 10 10 O 1.21286 * 119.99690 * 291.25348 * 9 5 4 11 11 N 1.34770 * 120.00319 * 111.25270 * 9 5 4 12 12 S 1.65601 * 120.00138 * 180.02562 * 11 9 5 13 13 O 1.42099 * 104.27614 * 308.92517 * 12 11 9 14 14 O 1.42098 * 104.27658 * 181.06889 * 12 11 9 15 15 C 1.81402 * 104.45062 * 64.99815 * 12 11 9 16 16 C 1.50701 * 109.47102 * 180.02562 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 H 1.09000 * 109.46849 * 274.31165 * 1 2 3 25 25 H 1.09000 * 109.47048 * 34.30802 * 1 2 3 26 26 H 1.08997 * 109.47133 * 154.31074 * 1 2 3 27 27 H 1.09003 * 109.47096 * 205.69280 * 3 2 1 28 28 H 1.09005 * 109.46860 * 325.69054 * 3 2 1 29 29 H 1.08991 * 109.47343 * 85.69071 * 3 2 1 30 30 H 1.09003 * 117.49052 * 145.03684 * 4 2 1 31 31 H 1.08995 * 117.51623 * 0.02562 * 4 2 1 32 32 H 0.96702 * 117.00247 * 179.97438 * 8 6 5 33 33 H 0.97001 * 120.00030 * 359.97438 * 11 9 5 34 34 H 1.09000 * 109.47112 * 59.99567 * 15 12 11 35 35 H 1.09007 * 109.46585 * 300.00042 * 15 12 11 36 36 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1217 -0.7650 5 6 2.2364 -1.1210 0.7650 6 6 3.5289 -0.7810 1.4612 7 8 3.9689 0.3428 1.4034 8 8 4.1917 -1.7267 2.1455 9 6 1.3720 -2.1406 1.4608 10 8 0.1638 -2.0524 1.4025 11 7 1.9415 -3.1505 2.1480 12 16 0.9916 -4.2713 2.9121 13 8 0.0828 -3.4949 3.6805 14 8 1.9185 -5.1473 3.5388 15 6 0.1225 -5.1214 1.5658 16 6 -0.7849 -6.1778 2.1418 17 1 -0.8335 -6.3235 3.2109 18 6 -1.5482 -6.9625 1.3037 19 7 -1.4889 -6.7853 0.0019 20 14 -2.6671 -8.2772 2.0173 21 1 -4.0067 -7.6951 2.2853 22 1 -2.7981 -9.3950 1.0484 23 1 -2.0861 -8.7867 3.2853 24 1 -0.3633 0.0773 1.0248 25 1 -0.3633 0.8489 -0.5792 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4456 28 1 1.5811 2.0743 -0.5793 29 1 2.2773 1.7413 1.0247 30 1 3.1723 -0.8757 -1.2680 31 1 1.6123 -1.8593 -1.2686 32 1 5.0163 -1.4612 2.5751 33 1 2.9078 -3.2214 2.1943 34 1 0.8497 -5.5890 0.9020 35 1 -0.4711 -4.4001 1.0040 36 1 -2.0256 -7.3376 -0.5877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863960838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:49 Heat of formation + Delta-G solvation = -203.194219 kcal Electronic energy + Delta-G solvation = -24152.816737 eV Core-core repulsion = 20343.256662 eV Total energy + Delta-G solvation = -3809.560074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.53767 -40.77032 -38.74987 -38.10797 -37.07971 -37.03809 -35.61959 -35.42196 -31.12697 -30.98332 -28.39716 -26.95146 -25.61629 -24.31596 -22.16934 -21.04649 -20.27054 -19.73855 -19.18971 -18.61854 -18.28732 -17.57698 -17.05944 -16.92307 -16.45570 -16.21835 -15.95086 -15.59430 -15.06325 -14.69254 -14.52279 -14.43488 -14.13285 -14.10458 -13.63843 -13.49273 -13.23658 -13.13138 -13.01419 -12.93085 -12.74881 -12.64697 -12.56195 -12.31671 -12.06420 -12.05753 -11.82475 -11.53018 -11.13589 -11.06515 -10.83223 -10.78399 -8.43123 -6.62159 -0.79028 0.62633 1.01227 1.38071 1.40168 1.50760 1.52624 1.77710 2.29703 2.33499 2.70047 2.88500 2.91723 3.16096 3.32730 3.50144 3.84028 3.98906 4.04549 4.41705 4.61316 4.64022 4.73208 4.77220 4.85500 5.01383 5.02629 5.06589 5.27995 5.28558 5.45042 5.54997 5.64661 5.70125 6.31430 6.46801 6.86341 7.09614 8.69755 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.004742 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.597034 B = 5903.797965 C = 6592.020749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 C -0.102 4.102 4 C -0.094 4.094 5 C -0.203 4.203 6 C 0.532 3.468 7 O -0.505 6.505 8 O -0.513 6.513 9 C 0.571 3.429 10 O -0.504 6.504 11 N -1.037 6.037 12 S 2.592 3.408 13 O -0.984 6.984 14 O -0.978 6.978 15 C -0.416 4.416 16 C -0.570 4.570 17 H 0.067 0.933 18 C 0.029 3.971 19 N -0.905 5.905 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.261 1.261 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.148 0.852 31 H 0.124 0.876 32 H 0.442 0.558 33 H 0.445 0.555 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 13.060 -4.122 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.159 4.159 4 C -0.131 4.131 5 C -0.210 4.210 6 C 0.374 3.626 7 O -0.393 6.393 8 O -0.330 6.330 9 C 0.358 3.642 10 O -0.377 6.377 11 N -0.805 5.805 12 S 2.693 3.307 13 O -0.974 6.974 14 O -0.969 6.969 15 C -0.551 4.551 16 C -0.609 4.609 17 H 0.085 0.915 18 C -0.175 4.175 19 N -0.542 5.542 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.190 1.190 23 H -0.184 1.184 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.307 0.693 33 H 0.288 0.712 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.528 13.186 -3.553 17.244 hybrid contribution 0.367 -0.874 0.292 0.992 sum 10.895 12.313 -3.261 16.761 Atomic orbital electron populations 1.21497 0.90205 1.02957 1.02453 1.22066 0.95980 0.91475 0.95784 1.21461 1.00358 0.91416 1.02657 1.23767 1.04947 1.00563 0.83803 1.21407 0.95167 1.05375 0.99028 1.21356 0.83414 0.82321 0.75531 1.90741 1.67645 1.21950 1.58975 1.84190 1.41877 1.43438 1.63503 1.19505 0.87855 0.80493 0.76382 1.90936 1.14589 1.73608 1.58544 1.55139 1.24397 1.38730 1.62274 1.05704 0.73985 0.73666 0.77392 1.93487 1.65668 1.69261 1.68962 1.93495 1.62721 1.65965 1.74699 1.27628 1.08173 1.07504 1.11805 1.20707 1.27115 1.19145 0.93907 0.91529 1.25819 0.97442 0.99133 0.95115 1.70018 1.40290 1.40220 1.03629 0.85434 0.78769 0.78005 0.79022 1.19151 1.19027 1.18449 0.92983 0.89335 0.92375 0.90788 0.89852 0.92472 0.83461 0.85813 0.69283 0.71179 0.89332 0.89761 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 8.09 71.98 0.58 -2.19 16 2 C -0.05 -1.10 2.70 -52.16 -0.14 -1.25 16 3 C -0.10 -1.78 8.09 71.98 0.58 -1.20 16 4 C -0.09 -1.68 9.23 30.62 0.28 -1.40 16 5 C -0.20 -4.92 2.56 -53.68 -0.14 -5.06 16 6 C 0.53 11.15 7.84 71.24 0.56 11.71 16 7 O -0.50 -11.36 13.87 21.96 0.30 -11.06 16 8 O -0.51 -8.07 10.51 -51.46 -0.54 -8.61 16 9 C 0.57 18.99 7.10 87.66 0.62 19.62 16 10 O -0.50 -20.27 11.21 13.34 0.15 -20.12 16 11 N -1.04 -34.61 5.42 -173.54 -0.94 -35.55 16 12 S 2.59 114.45 5.03 -56.49 -0.28 114.17 16 13 O -0.98 -49.74 17.04 -120.72 -2.06 -51.80 16 14 O -0.98 -44.93 18.08 -127.65 -2.31 -47.24 16 15 C -0.42 -20.94 5.64 71.24 0.40 -20.54 16 16 C -0.57 -32.25 9.13 25.60 0.23 -32.02 16 17 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 18 C 0.03 1.59 5.46 84.65 0.46 2.05 16 19 N -0.91 -51.39 13.29 21.45 0.28 -51.11 16 20 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H 0.05 1.51 7.26 -2.39 -0.02 1.49 16 25 H 0.09 1.61 7.92 -2.39 -0.02 1.59 16 26 H 0.06 1.60 7.02 -2.39 -0.02 1.58 16 27 H 0.07 1.20 7.02 -2.39 -0.02 1.18 16 28 H 0.08 1.12 7.92 -2.38 -0.02 1.10 16 29 H 0.06 1.18 7.26 -2.39 -0.02 1.16 16 30 H 0.15 1.73 8.05 -2.39 -0.02 1.71 16 31 H 0.12 2.26 8.05 -2.39 -0.02 2.24 16 32 H 0.44 2.36 9.10 -74.06 -0.67 1.69 16 33 H 0.44 11.78 5.95 -96.74 -0.58 11.21 16 34 H 0.09 4.29 8.14 -2.39 -0.02 4.27 16 35 H 0.08 4.44 7.19 -2.39 -0.02 4.42 16 36 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -77.40 318.06 -0.02 -77.42 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.10 Total: 19.45 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 3.45 Total: -30.27 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -0.65 Total: -86.66 kcal Atomic # 8 Polarization: -134.37 SS G_CDS: -4.45 Total: -138.82 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 114.45 SS G_CDS: -0.28 Total: 114.17 kcal Total: -77.40 -0.02 -77.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863960838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.775 kcal (2) G-P(sol) polarization free energy of solvation -77.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds