Wall clock time and date at job start Fri Apr 10 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.55253 * 325.19428 * 16 14 13 18 18 C 1.53030 * 109.55163 * 85.48311 * 16 14 13 19 19 C 1.52589 * 109.98763 * 183.50166 * 18 16 14 20 20 C 1.52588 * 110.64709 * 290.01615 * 19 18 16 21 21 C 1.53039 * 109.98384 * 69.98313 * 20 19 18 22 22 S 1.81671 * 108.99911 * 296.35252 * 21 20 19 23 23 O 1.42098 * 108.66368 * 299.97198 * 22 21 20 24 24 O 1.42105 * 108.66073 * 168.62801 * 22 21 20 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 1.09000 * 109.38699 * 303.66255 * 18 16 14 30 30 H 1.08997 * 109.38734 * 63.34873 * 18 16 14 31 31 H 1.09006 * 109.24367 * 169.71262 * 19 18 16 32 32 H 1.09004 * 109.20679 * 50.29587 * 19 18 16 33 33 H 1.08999 * 109.38006 * 309.82769 * 20 19 18 34 34 H 1.08994 * 109.38468 * 190.14407 * 20 19 18 35 35 H 1.09000 * 109.54767 * 176.50033 * 21 20 19 36 36 H 1.09000 * 109.55037 * 56.21395 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 1 3.4837 -8.1775 -0.5878 18 6 2.9945 -8.7389 1.4361 19 6 3.9925 -9.8931 1.4417 20 6 3.3108 -11.1959 1.0339 21 6 2.9467 -11.1528 -0.4519 22 16 1.7325 -9.8293 -0.7252 23 8 0.5759 -10.1055 0.0527 24 8 1.5977 -9.6177 -2.1239 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.4508 -7.8638 1.8987 30 1 2.1079 -9.0245 2.0021 31 1 4.4084 -10.0035 2.4433 32 1 4.7979 -9.6743 0.7405 33 1 2.4047 -11.3303 1.6247 34 1 3.9872 -12.0308 1.2166 35 1 2.5170 -12.1091 -0.7500 36 1 3.8418 -10.9540 -1.0412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320371669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:45 Heat of formation + Delta-G solvation = -193.088378 kcal Electronic energy + Delta-G solvation = -23054.879619 eV Core-core repulsion = 19245.757767 eV Total energy + Delta-G solvation = -3809.121852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.66575 -38.30848 -37.73934 -36.95495 -36.44007 -36.16222 -34.04362 -32.66269 -31.41578 -29.08122 -28.02074 -24.92476 -24.35735 -21.59627 -21.46832 -19.66696 -19.08518 -18.16282 -18.06161 -17.38063 -16.74919 -16.51806 -16.10399 -15.87304 -15.62843 -15.09284 -14.65325 -14.47223 -14.15600 -14.06913 -13.91246 -13.38882 -13.08542 -12.48418 -12.44749 -12.29021 -12.24862 -12.16491 -11.96917 -11.85151 -11.64845 -11.44987 -11.16076 -11.03644 -10.80078 -10.56492 -10.46754 -10.46024 -10.31901 -9.63860 -8.57926 -8.11783 -6.52685 -3.95136 -0.46373 1.93454 2.27257 2.34007 3.11318 3.21851 3.27242 3.43006 3.56324 3.69037 3.98497 4.02041 4.08519 4.23096 4.29382 4.43552 4.50487 4.74642 4.90283 4.95051 5.02916 5.11825 5.26565 5.30155 5.42981 5.48036 5.57636 5.62683 5.67893 5.98493 6.38319 7.45072 7.51452 7.90393 8.44432 9.03645 9.35375 9.84735 10.64389 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.002919 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.353984 B = 9588.594879 C = 9954.851674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.056 3.944 13 O -0.312 6.312 14 C 0.487 3.513 15 O -0.494 6.494 16 C -0.581 4.581 17 H 0.168 0.832 18 C -0.104 4.104 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.605 4.605 22 S 2.440 3.560 23 O -0.904 6.904 24 O -0.927 6.927 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -22.230 2.457 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.022 4.022 13 O -0.225 6.225 14 C 0.327 3.673 15 O -0.383 6.383 16 C -0.686 4.686 17 H 0.186 0.814 18 C -0.142 4.142 19 C -0.176 4.176 20 C -0.152 4.152 21 C -0.735 4.735 22 S 2.616 3.384 23 O -0.901 6.901 24 O -0.924 6.924 25 H 0.085 0.915 26 H 0.229 0.771 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.363 -22.059 2.069 22.795 hybrid contribution 0.477 1.001 0.180 1.124 sum 5.841 -21.057 2.249 21.968 Atomic orbital electron populations 1.69617 1.06017 1.28579 1.49376 1.25326 0.95696 0.99910 0.96774 0.85785 0.79207 0.80344 0.78533 1.20218 1.20777 1.19266 1.19729 0.93492 0.81701 1.48368 0.87573 1.41699 1.09430 1.04041 1.63558 1.19241 0.88308 0.83975 0.86255 1.90561 1.13346 1.86739 1.55460 1.22927 0.90861 0.84282 1.04084 1.86522 1.40238 1.13573 1.82178 1.22000 0.87090 0.84781 0.73395 1.90835 1.15592 1.86573 1.45275 1.30551 1.13784 1.12211 1.12066 0.81384 1.21372 1.01541 1.01343 0.89978 1.21721 0.98491 0.92720 1.04642 1.21358 1.03166 0.99667 0.91031 1.30320 1.18191 1.18788 1.06169 1.07956 0.77149 0.77747 0.75558 1.93606 1.42233 1.82492 1.71764 1.93616 1.85254 1.84444 1.29112 0.91548 0.77071 0.89025 0.89007 0.88000 0.88854 0.88800 0.90068 0.89355 0.89053 0.84213 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C 0.44 10.52 7.86 -10.98 -0.09 10.44 16 11 O -0.58 -15.88 16.08 -14.12 -0.23 -16.11 16 12 C 0.06 1.07 5.94 36.01 0.21 1.29 16 13 O -0.31 -5.76 9.75 -45.91 -0.45 -6.21 16 14 C 0.49 7.78 7.09 36.00 0.26 8.04 16 15 O -0.49 -9.03 15.22 -24.22 -0.37 -9.40 16 16 C -0.58 -6.19 2.92 -27.87 -0.08 -6.27 16 17 H 0.17 1.30 8.14 -51.92 -0.42 0.88 16 18 C -0.10 -0.84 5.00 -26.93 -0.13 -0.97 16 19 C -0.14 -0.65 5.63 -27.15 -0.15 -0.80 16 20 C -0.11 -0.50 5.73 -26.92 -0.15 -0.65 16 21 C -0.60 -3.11 6.35 37.18 0.24 -2.87 16 22 S 2.44 26.18 4.32 -107.50 -0.46 25.72 16 23 O -0.90 -12.68 17.06 -64.33 -1.10 -13.78 16 24 O -0.93 -13.30 18.10 -57.81 -1.05 -14.34 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 27 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 28 H 0.09 1.61 8.13 -51.93 -0.42 1.19 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.75 8.01 -51.93 -0.42 0.33 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.09 0.41 8.01 -51.93 -0.42 -0.01 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -37.61 324.04 -7.74 -45.35 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.47 Total: 5.23 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.14 Total: 0.28 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.67 Total: -37.19 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -3.19 Total: -59.83 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 26.18 SS G_CDS: -0.46 Total: 25.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.61 -7.74 -45.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320371669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.740 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds