Wall clock time and date at job start Fri Apr 10 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.55253 * 325.19428 * 16 14 13 18 18 C 1.53030 * 109.55163 * 85.48311 * 16 14 13 19 19 C 1.52589 * 109.98763 * 183.50166 * 18 16 14 20 20 C 1.52588 * 110.64709 * 290.01615 * 19 18 16 21 21 C 1.53039 * 109.98384 * 69.98313 * 20 19 18 22 22 S 1.81671 * 108.99911 * 296.35252 * 21 20 19 23 23 O 1.42098 * 108.66368 * 299.97198 * 22 21 20 24 24 O 1.42105 * 108.66073 * 168.62801 * 22 21 20 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 1.09000 * 109.38699 * 303.66255 * 18 16 14 30 30 H 1.08997 * 109.38734 * 63.34873 * 18 16 14 31 31 H 1.09006 * 109.24367 * 169.71262 * 19 18 16 32 32 H 1.09004 * 109.20679 * 50.29587 * 19 18 16 33 33 H 1.08999 * 109.38006 * 309.82769 * 20 19 18 34 34 H 1.08994 * 109.38468 * 190.14407 * 20 19 18 35 35 H 1.09000 * 109.54767 * 176.50033 * 21 20 19 36 36 H 1.09000 * 109.55037 * 56.21395 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 1 3.4837 -8.1775 -0.5878 18 6 2.9945 -8.7389 1.4361 19 6 3.9925 -9.8931 1.4417 20 6 3.3108 -11.1959 1.0339 21 6 2.9467 -11.1528 -0.4519 22 16 1.7325 -9.8293 -0.7252 23 8 0.5759 -10.1055 0.0527 24 8 1.5977 -9.6177 -2.1239 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.4508 -7.8638 1.8987 30 1 2.1079 -9.0245 2.0021 31 1 4.4084 -10.0035 2.4433 32 1 4.7979 -9.6743 0.7405 33 1 2.4047 -11.3303 1.6247 34 1 3.9872 -12.0308 1.2166 35 1 2.5170 -12.1091 -0.7500 36 1 3.8418 -10.9540 -1.0412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320371669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:45 Heat of formation + Delta-G solvation = -222.192781 kcal Electronic energy + Delta-G solvation = -23056.141681 eV Core-core repulsion = 19245.757767 eV Total energy + Delta-G solvation = -3810.383914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01551 -40.16599 -38.53251 -37.86775 -37.65240 -37.13041 -36.08518 -33.50678 -33.31507 -30.33883 -29.03498 -26.67623 -25.21319 -22.80081 -21.96180 -21.52991 -20.15201 -19.88751 -19.30046 -18.51398 -17.96418 -17.70959 -17.24811 -17.20058 -16.71985 -16.46050 -16.01220 -15.81957 -15.43882 -14.95636 -14.86493 -14.52014 -14.24589 -13.89273 -13.74245 -13.58642 -13.31068 -13.19566 -12.96541 -12.91894 -12.74298 -12.51041 -12.41375 -12.13291 -12.06596 -12.01841 -11.81357 -11.61556 -11.59459 -11.10873 -10.58371 -10.16297 -8.55529 -6.06953 -1.22796 0.69748 1.07436 1.33688 1.42233 1.53339 1.55702 1.81148 2.24762 2.59374 2.81851 2.92738 3.09641 3.29866 3.40501 3.67239 3.74656 3.84948 3.90818 4.02115 4.03862 4.13798 4.26021 4.50230 4.64954 4.83304 4.91971 4.99804 5.13724 5.19994 5.33787 5.35595 5.83826 6.19820 6.43575 6.98277 7.34147 7.86692 8.61473 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.002919 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.353984 B = 9588.594879 C = 9954.851674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.087 0.913 9 N -0.555 5.555 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.063 3.937 13 O -0.327 6.327 14 C 0.479 3.521 15 O -0.524 6.524 16 C -0.578 4.578 17 H 0.197 0.803 18 C -0.107 4.107 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.560 4.560 22 S 2.415 3.585 23 O -0.952 6.952 24 O -0.978 6.978 25 H 0.282 0.718 26 H 0.400 0.600 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 -23.871 2.918 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.223 3.777 11 O -0.502 6.502 12 C -0.015 4.015 13 O -0.241 6.241 14 C 0.322 3.678 15 O -0.414 6.414 16 C -0.683 4.683 17 H 0.214 0.786 18 C -0.145 4.145 19 C -0.173 4.173 20 C -0.158 4.158 21 C -0.695 4.695 22 S 2.598 3.402 23 O -0.949 6.949 24 O -0.975 6.975 25 H 0.091 0.909 26 H 0.234 0.766 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.184 0.816 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.221 -23.675 2.520 24.879 hybrid contribution -0.091 1.407 0.075 1.412 sum 7.130 -22.268 2.595 23.525 Atomic orbital electron populations 1.69679 1.07057 1.29862 1.48886 1.26175 0.96591 1.02723 0.95467 0.84822 0.77921 0.76122 0.78836 1.19436 1.19390 1.19332 1.19753 0.93028 0.83246 1.50858 0.89545 1.41742 1.09602 1.04182 1.63732 1.19938 0.88058 0.85162 0.84514 1.90520 1.15201 1.87606 1.56899 1.22708 0.90368 0.82605 1.05778 1.86525 1.40443 1.14421 1.82743 1.23073 0.87793 0.84934 0.71990 1.90815 1.17224 1.86778 1.46538 1.30788 1.13609 1.09392 1.14467 0.78578 1.21534 1.02351 1.02847 0.87779 1.21797 0.97768 0.91073 1.06614 1.21541 1.03847 1.00634 0.89759 1.30079 1.16318 1.15224 1.07894 1.08456 0.78573 0.79056 0.74142 1.93542 1.46311 1.83099 1.71988 1.93548 1.86825 1.85573 1.31532 0.90875 0.76554 0.87060 0.87495 0.88699 0.89644 0.86875 0.87945 0.89833 0.85401 0.81603 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 2 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 3 Si 1.00 41.93 29.55 68.60 2.03 43.95 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.31 16 8 H 0.09 5.12 7.16 -2.91 -0.02 5.10 16 9 N -0.56 -28.81 5.29 -306.98 -1.62 -30.43 16 10 C 0.44 21.61 7.86 87.66 0.69 22.30 16 11 O -0.62 -34.93 16.08 15.72 0.25 -34.68 16 12 C 0.06 2.46 5.94 71.24 0.42 2.88 16 13 O -0.33 -12.35 9.75 -45.07 -0.44 -12.79 16 14 C 0.48 15.69 7.09 71.24 0.50 16.19 16 15 O -0.52 -19.95 15.22 27.21 0.41 -19.53 16 16 C -0.58 -11.89 2.92 29.86 0.09 -11.81 16 17 H 0.20 2.71 8.14 -2.39 -0.02 2.69 16 18 C -0.11 -1.56 5.00 30.47 0.15 -1.40 16 19 C -0.14 -0.71 5.63 30.32 0.17 -0.54 16 20 C -0.12 -0.47 5.73 30.47 0.17 -0.30 16 21 C -0.56 -3.31 6.35 72.00 0.46 -2.85 16 22 S 2.41 50.53 4.32 -56.49 -0.24 50.28 16 23 O -0.95 -27.57 17.06 -121.16 -2.07 -29.63 16 24 O -0.98 -28.58 18.10 -127.40 -2.31 -30.88 16 25 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 26 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 27 H 0.11 3.90 8.13 -2.39 -0.02 3.88 16 28 H 0.11 3.85 8.13 -2.39 -0.02 3.83 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 31 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.10 0.17 8.09 -2.39 -0.02 0.15 16 33 H 0.08 0.49 8.01 -2.39 -0.02 0.47 16 34 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.17 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -86.07 324.04 0.62 -85.45 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.38 Total: 20.69 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 3.94 Total: 6.17 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.34 Total: -79.03 kcal Atomic # 8 Polarization: -123.37 SS G_CDS: -4.15 Total: -127.51 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.24 Total: 50.28 kcal Total: -86.07 0.62 -85.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320371669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.744 kcal (2) G-P(sol) polarization free energy of solvation -86.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds