Wall clock time and date at job start Fri Apr 10 2020 14:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48507 * 109.46827 * 269.99615 * 3 2 1 5 5 H 1.48501 * 109.47126 * 29.99376 * 3 2 1 6 6 H 1.48496 * 109.47467 * 149.99911 * 3 2 1 7 7 C 1.37877 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00429 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.50710 * 109.46747 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00070 * 359.72286 * 11 10 9 13 13 N 1.34773 * 119.99466 * 180.02562 * 11 10 9 14 14 C 1.46392 * 119.70313 * 353.76903 * 13 11 10 15 15 C 1.53662 * 109.24540 * 115.72694 * 14 13 11 16 16 S 1.81663 * 108.90840 * 58.42529 * 15 14 13 17 17 O 1.42093 * 108.65427 * 189.98019 * 16 15 14 18 18 O 1.42102 * 108.72585 * 58.70487 * 16 15 14 19 19 C 1.81673 * 101.38538 * 304.33077 * 16 15 14 20 20 C 1.46391 * 119.69602 * 174.05157 * 13 11 10 21 21 H 1.08999 * 109.46423 * 124.26065 * 20 13 11 22 22 C 1.50700 * 109.46304 * 4.28185 * 20 13 11 23 23 O 1.20819 * 119.99968 * 275.45277 * 22 20 13 24 24 O 1.34227 * 119.99613 * 95.45842 * 22 20 13 25 25 H 0.96998 * 120.00036 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47100 * 59.99973 * 9 7 2 27 27 H 1.09001 * 109.47236 * 300.00480 * 9 7 2 28 28 H 1.08999 * 109.47087 * 60.00565 * 10 9 7 29 29 H 1.08992 * 109.47163 * 299.99663 * 10 9 7 30 30 H 1.08996 * 109.46625 * 235.74109 * 14 13 11 31 31 H 1.08994 * 109.46320 * 355.72100 * 14 13 11 32 32 H 1.09006 * 109.66635 * 298.54872 * 15 14 13 33 33 H 1.08998 * 109.57589 * 178.25554 * 15 14 13 34 34 H 1.08991 * 109.55519 * 295.72031 * 19 16 15 35 35 H 1.09007 * 109.55323 * 175.39912 * 19 16 15 36 36 H 0.96706 * 116.99620 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5286 -2.6365 0.0009 12 8 6.1349 -1.5862 -0.0041 13 7 6.2024 -3.8037 0.0003 14 6 5.4703 -5.0640 0.1377 15 6 5.6362 -5.8889 -1.1481 16 16 7.4056 -6.1862 -1.4325 17 8 7.5703 -6.7418 -2.7299 18 8 7.9391 -6.8736 -0.3090 19 6 8.0577 -4.4906 -1.4395 20 6 7.6603 -3.7994 -0.1315 21 1 8.1027 -4.3326 0.7100 22 6 8.1592 -2.3774 -0.1432 23 8 8.1720 -1.7502 -1.1758 24 8 8.5895 -1.8079 0.9935 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8753 -0.6804 -0.8888 28 1 3.6586 -3.1501 -0.8893 29 1 3.6579 -3.1505 0.8907 30 1 5.8665 -5.6237 0.9849 31 1 4.4137 -4.8540 0.3034 32 1 5.2181 -5.3405 -1.9923 33 1 5.1187 -6.8420 -1.0398 34 1 7.6395 -3.9424 -2.2836 35 1 9.1443 -4.5179 -1.5223 36 1 8.9005 -0.8940 0.9362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:35 Heat of formation + Delta-G solvation = -179.148502 kcal Electronic energy + Delta-G solvation = -24136.713954 eV Core-core repulsion = 20328.196580 eV Total energy + Delta-G solvation = -3808.517374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26670 -39.17945 -37.57151 -36.81688 -36.45136 -35.93964 -33.88386 -32.85767 -31.45669 -30.67925 -26.84999 -25.63625 -24.13935 -22.45527 -20.81982 -19.72566 -18.93555 -18.39095 -17.61937 -17.14322 -16.79679 -16.65043 -16.27611 -16.19628 -16.10546 -15.25583 -14.78096 -14.51337 -14.20572 -13.99456 -13.61760 -13.51525 -12.98148 -12.84015 -12.63660 -12.59220 -12.56212 -12.41183 -12.34089 -11.60312 -11.45722 -11.33851 -11.12085 -10.88232 -10.42353 -10.27394 -10.22482 -9.94000 -9.62127 -9.35747 -9.32102 -8.61758 -6.13903 -4.14095 -0.47711 1.93701 2.12626 2.46028 2.80537 2.89355 3.19611 3.30123 3.37365 3.46097 3.57483 3.72866 4.14027 4.28757 4.40814 4.45696 4.59161 4.72258 4.83328 5.12430 5.17771 5.21484 5.27226 5.33369 5.69962 5.77614 5.88899 6.36762 6.66986 6.89260 7.17373 7.23594 7.63471 7.91808 8.05401 8.38338 8.87219 9.48478 10.98588 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.004546 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.788305 B = 6158.134991 C = 7089.083076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.494 6.494 13 N -0.630 5.630 14 C 0.120 3.880 15 C -0.625 4.625 16 S 2.428 3.572 17 O -0.932 6.932 18 O -0.930 6.930 19 C -0.620 4.620 20 C 0.165 3.835 21 H 0.125 0.875 22 C 0.507 3.493 23 O -0.508 6.508 24 O -0.514 6.514 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.021 0.979 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.634 -13.131 0.632 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.038 4.038 10 C -0.158 4.158 11 C 0.305 3.695 12 O -0.368 6.368 13 N -0.369 5.369 14 C -0.004 4.004 15 C -0.756 4.756 16 S 2.609 3.391 17 O -0.929 6.929 18 O -0.927 6.927 19 C -0.748 4.748 20 C 0.059 3.941 21 H 0.143 0.857 22 C 0.349 3.651 23 O -0.396 6.396 24 O -0.327 6.327 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 16.119 -13.450 0.254 20.995 hybrid contribution 0.127 2.172 -0.165 2.182 sum 16.246 -11.278 0.090 19.777 Atomic orbital electron populations 1.69895 1.06289 1.27144 1.50490 1.24947 0.94697 0.99217 0.94139 0.86812 0.80525 0.83457 0.78821 1.20189 1.21313 1.18666 1.21020 0.88907 0.94663 1.52063 0.90799 1.19424 0.96834 0.89616 0.97925 1.21787 0.85908 1.04159 1.03905 1.22071 0.92499 0.81887 0.73042 1.90600 1.67531 1.30558 1.48134 1.48511 1.03889 1.08240 1.76259 1.21582 1.01372 0.82880 0.94531 1.30727 1.25442 1.11035 1.08361 1.07826 0.78847 0.76994 0.75453 1.93626 1.85016 1.74635 1.39599 1.93611 1.76813 1.69421 1.52836 1.30720 1.14190 1.24109 1.05759 1.20092 0.83054 0.93834 0.97106 0.85686 1.21691 0.73963 0.87820 0.81661 1.90704 1.52103 1.62901 1.33908 1.84366 1.76566 1.34450 1.37283 0.92561 0.95652 0.96094 0.88737 0.88635 0.87965 0.85475 0.83697 0.82830 0.82952 0.83230 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.53 -14.24 9.66 -34.44 -0.33 -14.58 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 9 C 0.00 0.00 3.33 -27.88 -0.09 -0.10 16 10 C -0.12 -1.98 4.00 -27.88 -0.11 -2.09 16 11 C 0.51 8.17 7.58 -10.98 -0.08 8.09 16 12 O -0.49 -9.76 11.65 -24.98 -0.29 -10.05 16 13 N -0.63 -7.08 2.79 -167.09 -0.47 -7.55 16 14 C 0.12 0.87 6.13 -3.76 -0.02 0.85 16 15 C -0.62 -3.63 6.57 37.50 0.25 -3.39 16 16 S 2.43 18.97 5.29 -107.50 -0.57 18.40 16 17 O -0.93 -10.53 18.10 -57.82 -1.05 -11.57 16 18 O -0.93 -9.28 18.02 -57.82 -1.04 -10.32 16 19 C -0.62 -5.25 5.52 37.25 0.21 -5.05 16 20 C 0.16 1.76 3.18 -69.05 -0.22 1.54 16 21 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 22 C 0.51 7.22 4.54 36.01 0.16 7.39 16 23 O -0.51 -8.95 15.81 -26.56 -0.42 -9.37 16 24 O -0.51 -6.47 13.16 -45.58 -0.60 -7.07 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.03 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 28 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.10 1.39 7.42 -51.93 -0.39 1.01 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.13 0.85 5.77 -51.93 -0.30 0.55 16 32 H 0.14 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.15 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.15 1.39 7.81 -51.93 -0.41 0.98 16 35 H 0.15 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.41 3.91 9.10 45.56 0.41 4.33 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -40.25 312.85 -7.52 -47.76 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -3.56 Total: -0.60 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.35 Total: -5.38 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.31 Total: -33.71 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -3.40 Total: -48.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Atomic # 16 Polarization: 18.97 SS G_CDS: -0.57 Total: 18.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -40.25 -7.52 -47.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.384 kcal (2) G-P(sol) polarization free energy of solvation -40.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds