Wall clock time and date at job start Fri Apr 10 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48507 * 109.46827 * 269.99615 * 3 2 1 5 5 H 1.48501 * 109.47126 * 29.99376 * 3 2 1 6 6 H 1.48496 * 109.47467 * 149.99911 * 3 2 1 7 7 C 1.37877 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00429 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.50710 * 109.46747 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00070 * 359.72286 * 11 10 9 13 13 N 1.34773 * 119.99466 * 180.02562 * 11 10 9 14 14 C 1.46392 * 119.70313 * 353.76903 * 13 11 10 15 15 C 1.53662 * 109.24540 * 115.72694 * 14 13 11 16 16 S 1.81663 * 108.90840 * 58.42529 * 15 14 13 17 17 O 1.42093 * 108.65427 * 189.98019 * 16 15 14 18 18 O 1.42102 * 108.72585 * 58.70487 * 16 15 14 19 19 C 1.81673 * 101.38538 * 304.33077 * 16 15 14 20 20 C 1.46391 * 119.69602 * 174.05157 * 13 11 10 21 21 H 1.08999 * 109.46423 * 124.26065 * 20 13 11 22 22 C 1.50700 * 109.46304 * 4.28185 * 20 13 11 23 23 O 1.20819 * 119.99968 * 275.45277 * 22 20 13 24 24 O 1.34227 * 119.99613 * 95.45842 * 22 20 13 25 25 H 0.96998 * 120.00036 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47100 * 59.99973 * 9 7 2 27 27 H 1.09001 * 109.47236 * 300.00480 * 9 7 2 28 28 H 1.08999 * 109.47087 * 60.00565 * 10 9 7 29 29 H 1.08992 * 109.47163 * 299.99663 * 10 9 7 30 30 H 1.08996 * 109.46625 * 235.74109 * 14 13 11 31 31 H 1.08994 * 109.46320 * 355.72100 * 14 13 11 32 32 H 1.09006 * 109.66635 * 298.54872 * 15 14 13 33 33 H 1.08998 * 109.57589 * 178.25554 * 15 14 13 34 34 H 1.08991 * 109.55519 * 295.72031 * 19 16 15 35 35 H 1.09007 * 109.55323 * 175.39912 * 19 16 15 36 36 H 0.96706 * 116.99620 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5286 -2.6365 0.0009 12 8 6.1349 -1.5862 -0.0041 13 7 6.2024 -3.8037 0.0003 14 6 5.4703 -5.0640 0.1377 15 6 5.6362 -5.8889 -1.1481 16 16 7.4056 -6.1862 -1.4325 17 8 7.5703 -6.7418 -2.7299 18 8 7.9391 -6.8736 -0.3090 19 6 8.0577 -4.4906 -1.4395 20 6 7.6603 -3.7994 -0.1315 21 1 8.1027 -4.3326 0.7100 22 6 8.1592 -2.3774 -0.1432 23 8 8.1720 -1.7502 -1.1758 24 8 8.5895 -1.8079 0.9935 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8753 -0.6804 -0.8888 28 1 3.6586 -3.1501 -0.8893 29 1 3.6579 -3.1505 0.8907 30 1 5.8665 -5.6237 0.9849 31 1 4.4137 -4.8540 0.3034 32 1 5.2181 -5.3405 -1.9923 33 1 5.1187 -6.8420 -1.0398 34 1 7.6395 -3.9424 -2.2836 35 1 9.1443 -4.5179 -1.5223 36 1 8.9005 -0.8940 0.9362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:34 Heat of formation + Delta-G solvation = -212.025040 kcal Electronic energy + Delta-G solvation = -24138.139588 eV Core-core repulsion = 20328.196580 eV Total energy + Delta-G solvation = -3809.943008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.31282 -40.29386 -38.38170 -37.72853 -37.17603 -37.00720 -35.66006 -33.97485 -32.97084 -31.57349 -28.33638 -26.68836 -24.90263 -23.81682 -22.18073 -20.70855 -19.88895 -19.38606 -19.01265 -18.25114 -17.98643 -17.45700 -17.26497 -17.02589 -16.88491 -16.35983 -16.15195 -15.83103 -15.42770 -15.21041 -14.71387 -14.46923 -14.32685 -14.08664 -13.72852 -13.47042 -13.35142 -13.29860 -13.15309 -12.96288 -12.92536 -12.48855 -12.20671 -12.06965 -12.00891 -11.81231 -11.65466 -11.41628 -11.29415 -10.90483 -10.79053 -10.26941 -8.32235 -6.34244 -1.09447 0.97502 1.30429 1.31101 1.34212 1.46537 1.50744 1.81717 2.03139 2.32756 2.58901 2.85615 3.04387 3.08960 3.48589 3.61623 3.72803 3.95975 4.02789 4.17935 4.24712 4.31263 4.43441 4.59817 4.67305 4.85913 4.93671 5.06476 5.32755 5.40643 5.58641 5.69951 5.86850 6.22488 6.71307 6.82654 7.02347 7.31468 8.83025 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.004546 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.788305 B = 6158.134991 C = 7089.083076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.018 3.982 3 Si 0.931 3.069 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.002 3.998 10 C -0.113 4.113 11 C 0.514 3.486 12 O -0.542 6.542 13 N -0.617 5.617 14 C 0.105 3.895 15 C -0.610 4.610 16 S 2.452 3.548 17 O -0.968 6.968 18 O -0.949 6.949 19 C -0.622 4.622 20 C 0.160 3.840 21 H 0.158 0.842 22 C 0.501 3.499 23 O -0.550 6.550 24 O -0.514 6.514 25 H 0.266 0.734 26 H 0.011 0.989 27 H 0.003 0.997 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.190 0.810 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.252 -14.905 1.224 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.036 4.036 10 C -0.152 4.152 11 C 0.305 3.695 12 O -0.420 6.420 13 N -0.355 5.355 14 C -0.017 4.017 15 C -0.743 4.743 16 S 2.635 3.365 17 O -0.965 6.965 18 O -0.946 6.946 19 C -0.750 4.750 20 C 0.055 3.945 21 H 0.175 0.825 22 C 0.345 3.655 23 O -0.441 6.441 24 O -0.327 6.327 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.022 0.978 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.207 0.793 34 H 0.162 0.838 35 H 0.184 0.816 36 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 16.783 -15.278 0.858 22.711 hybrid contribution -0.070 2.658 -0.314 2.677 sum 16.713 -12.621 0.544 20.950 Atomic orbital electron populations 1.69999 1.07637 1.27970 1.52551 1.25701 0.95348 1.02454 0.94520 0.85951 0.79333 0.80297 0.78799 1.20021 1.20546 1.18667 1.21391 0.90956 0.93844 1.49965 0.92269 1.19265 0.94248 0.93812 0.96295 1.21622 0.87023 1.00246 1.06306 1.21770 0.92109 0.82565 0.73024 1.90594 1.68303 1.32610 1.50537 1.48398 1.04234 1.08277 1.74560 1.22079 1.01883 0.81380 0.96309 1.30659 1.22822 1.12767 1.08041 1.07078 0.79536 0.75856 0.74011 1.93584 1.86134 1.75386 1.41442 1.93581 1.78054 1.69855 1.53099 1.30785 1.15656 1.24217 1.04308 1.20402 0.82537 0.92054 0.99476 0.82473 1.22427 0.72919 0.89009 0.81148 1.90676 1.53737 1.64347 1.35307 1.84351 1.76197 1.35362 1.36790 0.92446 0.97085 0.97843 0.86585 0.86028 0.84851 0.84236 0.82823 0.79289 0.83805 0.81602 0.71659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.96 21.45 0.30 -56.50 16 2 C 0.02 1.02 5.47 84.66 0.46 1.48 16 3 Si 0.93 45.44 27.47 68.60 1.88 47.33 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.26 -12.69 6.54 99.48 0.65 -12.04 16 7 C -0.52 -28.08 9.66 25.60 0.25 -27.83 16 8 H 0.06 3.28 7.99 -2.91 -0.02 3.26 16 9 C 0.00 0.08 3.33 29.85 0.10 0.18 16 10 C -0.11 -3.53 4.00 29.85 0.12 -3.41 16 11 C 0.51 15.41 7.58 87.66 0.66 16.08 16 12 O -0.54 -21.21 11.65 26.19 0.31 -20.90 16 13 N -0.62 -12.04 2.79 -800.93 -2.24 -14.28 16 14 C 0.10 1.04 6.13 86.62 0.53 1.58 16 15 C -0.61 -4.45 6.57 72.20 0.47 -3.97 16 16 S 2.45 31.54 5.29 -56.49 -0.30 31.24 16 17 O -0.97 -20.15 18.10 -127.38 -2.31 -22.46 16 18 O -0.95 -15.99 18.02 -127.38 -2.30 -18.29 16 19 C -0.62 -9.37 5.52 72.04 0.40 -8.97 16 20 C 0.16 3.05 3.18 44.33 0.14 3.20 16 21 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 22 C 0.50 13.88 4.54 71.24 0.32 14.20 16 23 O -0.55 -19.51 15.81 29.46 0.47 -19.04 16 24 O -0.51 -12.53 13.16 -45.34 -0.60 -13.13 16 25 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 27 H 0.00 0.15 7.52 -2.39 -0.02 0.14 16 28 H 0.12 3.11 8.09 -2.39 -0.02 3.09 16 29 H 0.12 3.14 7.42 -2.39 -0.02 3.12 16 30 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.14 1.16 5.77 -2.39 -0.01 1.15 16 32 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.19 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.14 2.48 7.81 -2.39 -0.02 2.46 16 35 H 0.17 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.42 7.98 9.10 -74.05 -0.67 7.31 16 Total: -1.00 -88.68 312.85 -0.93 -89.60 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 0.40 Total: 3.90 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 3.46 Total: -7.47 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.94 Total: -70.78 kcal Atomic # 8 Polarization: -89.40 SS G_CDS: -4.43 Total: -93.83 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Atomic # 16 Polarization: 31.54 SS G_CDS: -0.30 Total: 31.24 kcal Total: -88.68 -0.93 -89.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.422 kcal (2) G-P(sol) polarization free energy of solvation -88.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds