Wall clock time and date at job start Fri Apr 10 2020 14:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 110.53233 * 2 1 4 4 C 1.38239 * 120.00363 * 270.69794 * 3 2 1 5 5 C 1.38230 * 120.00191 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00455 * 0.02562 * 5 4 3 7 7 N 1.48014 * 120.00259 * 179.97438 * 6 5 4 8 8 O 1.21799 * 120.00074 * 0.02562 * 7 6 5 9 9 O 1.21799 * 119.99992 * 179.71798 * 7 6 5 10 10 C 1.38240 * 119.99657 * 0.24848 * 6 5 4 11 11 C 1.38234 * 120.00079 * 359.49677 * 10 6 5 12 12 N 1.47312 * 110.59700 * 237.16831 * 2 1 3 13 13 C 1.34867 * 106.43725 * 241.27208 * 12 2 1 14 14 O 1.21521 * 123.72574 * 180.02562 * 13 12 2 15 15 N 1.33791 * 112.50259 * 0.13418 * 13 12 2 16 16 C 1.37511 * 124.17801 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00258 * 321.30016 * 16 15 13 18 18 C 1.38894 * 119.99905 * 141.29152 * 16 15 13 19 19 N 1.31379 * 119.99862 * 156.17196 * 18 16 15 20 20 Si 1.86805 * 120.00167 * 336.17911 * 18 16 15 21 21 H 1.48492 * 109.47467 * 95.41848 * 20 18 16 22 22 H 1.48498 * 109.47001 * 215.42362 * 20 18 16 23 23 H 1.48497 * 109.46878 * 335.41847 * 20 18 16 24 24 C 1.34767 * 111.64116 * 359.91678 * 15 13 12 25 25 O 1.21237 * 127.15174 * 180.02562 * 24 15 13 26 26 H 1.08997 * 109.47465 * 59.99754 * 1 2 3 27 27 H 1.08999 * 109.47425 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47318 * 299.99919 * 1 2 3 29 29 H 1.07997 * 119.99359 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.99634 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.99690 * 179.73342 * 10 6 5 32 32 H 1.08001 * 120.00553 * 180.22968 * 11 10 6 33 33 H 0.96998 * 126.69236 * 61.27590 * 12 2 1 34 34 H 0.97011 * 120.00262 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0585 1.4112 0.0000 4 6 2.2873 2.0637 -1.1971 5 6 2.7726 3.3580 -1.1970 6 6 3.0297 3.9998 0.0000 7 7 3.5499 5.3855 -0.0001 8 8 3.7511 5.9605 -1.0548 9 8 3.7716 5.9528 1.0547 10 6 2.8063 3.3454 1.1970 11 6 2.3160 2.0529 1.1971 12 7 2.0482 -0.7476 -1.1587 13 6 2.7645 -1.7759 -0.6601 14 8 3.3355 -2.5975 -1.3497 15 7 2.7743 -1.7919 0.6777 16 6 3.4301 -2.7346 1.4341 17 1 3.4376 -3.7682 1.1212 18 6 4.0830 -2.3574 2.6006 19 7 4.2975 -3.2415 3.5485 20 14 4.6558 -0.5932 2.8218 21 1 3.6312 0.1686 3.5800 22 1 5.9379 -0.5793 3.5708 23 1 4.8537 0.0335 1.4902 24 6 2.0632 -0.7693 1.1923 25 8 1.8872 -0.5168 2.3649 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.0868 1.5621 -2.1322 30 1 2.9517 3.8675 -2.1323 31 1 3.0113 3.8453 2.1321 32 1 2.1379 1.5429 2.1323 33 1 1.9022 -0.5399 -2.0949 34 1 4.7532 -2.9780 4.3634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004307360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:42 Heat of formation + Delta-G solvation = -21.717576 kcal Electronic energy + Delta-G solvation = -25376.837924 eV Core-core repulsion = 21471.996067 eV Total energy + Delta-G solvation = -3904.841857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.73036 -43.29857 -40.65194 -39.51710 -37.75643 -37.45824 -36.56573 -34.44157 -33.18723 -32.54528 -31.10509 -28.12904 -27.74918 -25.56731 -24.45375 -23.87948 -22.57104 -21.93139 -20.52999 -20.04696 -19.72466 -18.84581 -18.69606 -18.22388 -17.42549 -17.10485 -16.89079 -16.32489 -16.06741 -15.83425 -15.62013 -15.15852 -15.01681 -14.81824 -14.63205 -14.20406 -13.96917 -13.57775 -13.28301 -13.01287 -12.84641 -12.80904 -12.68791 -12.37381 -12.35871 -12.32163 -11.74395 -11.40871 -10.94811 -10.76275 -10.59298 -10.54284 -10.49198 -8.76667 -6.60005 -1.39154 -0.18292 0.10533 0.24807 0.55690 1.12302 1.16063 1.23491 1.53810 1.98449 2.00705 2.11798 2.33751 2.79925 2.83632 3.02565 3.29534 3.38976 3.66135 3.80000 3.85717 4.17699 4.31708 4.52386 4.55553 4.61641 4.67220 4.70068 4.96252 5.02629 5.07370 5.16371 5.31801 5.57737 5.86319 6.15727 6.31519 6.41986 6.73399 6.84012 7.43052 8.34899 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.005805 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.694118 B = 4822.592449 C = 5653.233679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 C -0.039 4.039 4 C -0.083 4.083 5 C -0.040 4.040 6 C -0.055 4.055 7 N 0.031 4.969 8 O -0.152 6.152 9 O -0.194 6.194 10 C -0.053 4.053 11 C -0.125 4.125 12 N -0.700 5.700 13 C 0.679 3.321 14 O -0.581 6.581 15 N -0.437 5.437 16 C -0.368 4.368 17 H 0.079 0.921 18 C 0.057 3.943 19 N -0.874 5.874 20 Si 0.918 3.082 21 H -0.234 1.234 22 H -0.279 1.279 23 H -0.269 1.269 24 C 0.471 3.529 25 O -0.494 6.494 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.189 0.811 30 H 0.186 0.814 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.453 0.547 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 14.879 -10.068 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.078 3.922 3 C -0.040 4.040 4 C -0.101 4.101 5 C -0.059 4.059 6 C -0.138 4.138 7 N 0.548 4.452 8 O -0.372 6.372 9 O -0.403 6.403 10 C -0.072 4.072 11 C -0.144 4.144 12 N -0.368 5.368 13 C 0.382 3.618 14 O -0.459 6.459 15 N -0.170 5.170 16 C -0.494 4.494 17 H 0.097 0.903 18 C -0.152 4.152 19 N -0.507 5.507 20 Si 0.741 3.259 21 H -0.158 1.158 22 H -0.205 1.205 23 H -0.194 1.194 24 C 0.261 3.739 25 O -0.369 6.369 26 H 0.140 0.860 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.207 0.793 30 H 0.203 0.797 31 H 0.178 0.822 32 H 0.165 0.835 33 H 0.302 0.698 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.718 13.748 -9.508 18.852 hybrid contribution 0.899 0.418 0.420 1.077 sum -7.818 14.166 -9.087 18.558 Atomic orbital electron populations 1.22075 0.85705 1.04988 1.06587 1.20230 0.99331 0.88384 0.84243 1.20087 0.95670 0.93380 0.94904 1.21261 0.97415 0.92716 0.98700 1.21366 0.92878 0.94282 0.97350 1.21358 1.11406 0.82948 0.98082 1.43818 0.97853 1.03397 1.00180 1.94496 1.54949 1.67201 1.20600 1.94557 1.56653 1.68140 1.20906 1.21086 0.94175 0.93948 0.98030 1.21502 0.98760 0.94017 1.00146 1.45434 1.54941 1.27507 1.08944 1.16545 0.79925 0.82773 0.82562 1.90855 1.49882 1.43057 1.62061 1.42168 1.42461 1.26129 1.06233 1.18650 1.36270 0.89321 1.05173 0.90282 1.25737 0.93712 1.02088 0.93697 1.69769 1.37468 1.37787 1.05709 0.86225 0.78745 0.81234 0.79678 1.15767 1.20499 1.19410 1.21250 0.78906 0.83279 0.90423 1.90624 1.58419 1.70237 1.17656 0.85998 0.90807 0.89232 0.79349 0.79661 0.82151 0.83531 0.69786 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.96 71.98 0.65 -1.72 16 2 C 0.17 4.37 1.16 2.23 0.00 4.38 16 3 C -0.04 -0.87 4.88 -19.86 -0.10 -0.97 16 4 C -0.08 -1.23 9.35 22.27 0.21 -1.02 16 5 C -0.04 -0.64 9.55 22.27 0.21 -0.43 16 6 C -0.05 -1.23 6.85 36.38 0.25 -0.98 16 7 N 0.03 0.80 4.45 -46.47 -0.21 0.59 16 8 O -0.15 -3.86 18.45 18.89 0.35 -3.51 16 9 O -0.19 -5.56 18.45 18.89 0.35 -5.21 16 10 C -0.05 -1.27 9.56 22.27 0.21 -1.05 16 11 C -0.13 -3.26 9.18 22.27 0.20 -3.05 16 12 N -0.70 -17.98 5.35 -442.81 -2.37 -20.35 16 13 C 0.68 27.91 8.58 179.33 1.54 29.45 16 14 O -0.58 -28.05 17.62 -3.78 -0.07 -28.12 16 15 N -0.44 -20.49 2.31 -598.33 -1.38 -21.87 16 16 C -0.37 -20.92 9.82 83.96 0.82 -20.10 16 17 H 0.08 4.97 8.06 -2.91 -0.02 4.95 16 18 C 0.06 3.19 5.10 84.92 0.43 3.63 16 19 N -0.87 -50.91 13.95 21.65 0.30 -50.60 16 20 Si 0.92 43.64 25.10 68.60 1.72 45.36 16 21 H -0.23 -10.63 6.30 99.48 0.63 -10.01 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.47 18.80 4.76 87.94 0.42 19.22 16 25 O -0.49 -21.72 11.80 -2.90 -0.03 -21.75 16 26 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.19 1.25 7.02 -2.91 -0.02 1.23 16 30 H 0.19 1.94 7.61 -2.91 -0.02 1.92 16 31 H 0.16 3.54 7.61 -2.91 -0.02 3.52 16 32 H 0.15 4.48 5.69 -2.91 -0.02 4.46 16 33 H 0.45 7.10 8.14 -92.71 -0.75 6.35 16 34 H 0.29 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -74.90 302.62 3.87 -71.03 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.35 Total: 7.09 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 4.85 Total: 27.34 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -3.66 Total: -92.23 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: 0.60 Total: -58.60 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.72 Total: 45.36 kcal Total: -74.90 3.87 -71.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004307360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.317 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds