Wall clock time and date at job start Fri Apr 10 2020 14:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.65644 * 2 1 4 4 C 1.38264 * 119.99917 * 267.08746 * 3 2 1 5 5 C 1.38216 * 119.99698 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.38221 * 119.99858 * 359.95334 * 6 5 4 8 8 N 1.48013 * 119.99808 * 180.02562 * 7 6 5 9 9 O 1.21803 * 120.00098 * 0.02562 * 8 7 6 10 10 O 1.21805 * 119.99925 * 179.97438 * 8 7 6 11 11 C 1.38214 * 119.99888 * 86.81192 * 3 2 1 12 12 N 1.47305 * 110.60226 * 122.91171 * 2 1 3 13 13 C 1.34532 * 106.62115 * 118.52735 * 12 2 1 14 14 O 1.21518 * 123.77078 * 180.02562 * 13 12 2 15 15 N 1.33791 * 112.45560 * 0.02562 * 13 12 2 16 16 C 1.37512 * 124.17650 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00155 * 327.17016 * 16 15 13 18 18 C 1.38908 * 119.99726 * 147.16908 * 16 15 13 19 19 N 1.31381 * 119.99963 * 340.16073 * 18 16 15 20 20 Si 1.86796 * 119.99527 * 160.15738 * 18 16 15 21 21 H 1.48494 * 109.47375 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46935 * 120.00273 * 20 18 16 23 23 H 1.48501 * 109.46990 * 239.99970 * 20 18 16 24 24 C 1.34768 * 111.64635 * 0.02562 * 15 13 12 25 25 O 1.21235 * 127.15840 * 179.73631 * 24 15 13 26 26 H 1.09001 * 109.47000 * 182.20741 * 1 2 3 27 27 H 1.08993 * 109.47237 * 302.21412 * 1 2 3 28 28 H 1.09006 * 109.46930 * 62.21211 * 1 2 3 29 29 H 1.07994 * 119.99756 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99655 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.00549 * 179.97438 * 6 5 4 32 32 H 1.07993 * 119.99757 * 0.02562 * 11 3 2 33 33 H 0.96999 * 126.69096 * 298.49790 * 12 2 1 34 34 H 0.96998 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4102 0.0000 4 6 2.3624 2.0355 -1.1959 5 6 2.8495 3.3290 -1.1958 6 6 3.0354 3.9977 -0.0001 7 6 2.7333 3.3730 1.1953 8 7 2.9318 4.0891 2.4754 9 8 3.3610 5.2290 2.4753 10 8 2.6651 3.5388 3.5288 11 6 2.2431 2.0803 1.1951 12 7 2.0483 -0.7492 1.1575 13 6 2.7600 -1.7780 0.6627 14 8 3.3284 -2.6004 1.3535 15 7 2.7720 -1.7945 -0.6751 16 6 3.4263 -2.7393 -1.4301 17 1 4.3456 -3.1767 -1.0696 18 6 2.9049 -3.1312 -2.6565 19 7 1.6369 -2.9209 -2.9286 20 14 4.0066 -3.9570 -3.9188 21 1 5.3819 -4.0777 -3.3720 22 1 3.4771 -5.3095 -4.2286 23 1 4.0363 -3.1410 -5.1592 24 6 2.0645 -0.7702 -1.1912 25 8 1.8944 -0.5153 -2.3642 26 1 -0.3633 -1.0269 0.0396 27 1 -0.3633 0.5478 0.8694 28 1 -0.3633 0.4791 -0.9092 29 1 2.2168 1.5133 -2.1299 30 1 3.0848 3.8174 -2.1299 31 1 3.4164 5.0083 0.0000 32 1 2.0043 1.5932 2.1289 33 1 1.9049 -0.5411 2.0940 34 1 1.2728 -3.1942 -3.7851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031657917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:45 Heat of formation + Delta-G solvation = -5.140336 kcal Electronic energy + Delta-G solvation = -25234.005866 eV Core-core repulsion = 21329.882853 eV Total energy + Delta-G solvation = -3904.123014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27174 -41.70577 -39.39198 -37.34557 -36.62224 -35.66878 -34.49312 -32.32413 -32.02045 -31.16023 -29.49355 -26.69067 -25.95983 -24.48680 -22.80246 -22.51168 -21.03237 -20.56010 -18.85789 -18.69730 -17.76795 -17.58030 -16.85813 -16.33570 -15.89474 -15.75629 -15.43249 -14.67289 -14.48086 -14.28557 -13.98269 -13.76934 -13.56716 -12.94985 -12.68068 -12.33993 -12.22974 -12.15675 -11.77349 -11.64909 -11.51777 -11.23505 -11.19777 -11.16510 -10.95639 -10.48371 -9.84287 -9.69508 -9.50375 -9.47760 -9.03659 -8.90105 -8.13308 -6.59021 -4.35460 -0.21467 0.75219 1.30162 1.33003 2.66551 3.09324 3.10393 3.16307 3.21964 3.35974 3.93162 4.07099 4.19664 4.25807 4.33422 4.60782 4.77756 4.80838 4.92324 5.05756 5.07542 5.20215 5.35576 5.52742 5.69167 5.76532 5.91602 6.07414 6.10473 6.19868 6.37632 6.44344 7.28322 7.39374 7.58749 7.76283 7.98462 8.52367 8.80234 9.00955 9.56763 10.50494 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.004646 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.097374 B = 6024.624417 C = 6458.160978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.157 3.843 3 C -0.073 4.073 4 C -0.051 4.051 5 C -0.114 4.114 6 C -0.057 4.057 7 C -0.049 4.049 8 N 0.033 4.967 9 O -0.166 6.166 10 O -0.163 6.163 11 C -0.039 4.039 12 N -0.739 5.739 13 C 0.679 3.321 14 O -0.561 6.561 15 N -0.401 5.401 16 C -0.353 4.353 17 H 0.106 0.894 18 C 0.059 3.941 19 N -0.825 5.825 20 Si 0.930 3.070 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.501 3.499 25 O -0.457 6.457 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.424 0.576 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 11.870 2.031 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 C -0.075 4.075 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.076 4.076 7 C -0.132 4.132 8 N 0.551 4.449 9 O -0.381 6.381 10 O -0.378 6.378 11 C -0.059 4.059 12 N -0.405 5.405 13 C 0.383 3.617 14 O -0.437 6.437 15 N -0.132 5.132 16 C -0.478 4.478 17 H 0.124 0.876 18 C -0.153 4.153 19 N -0.457 5.457 20 Si 0.756 3.244 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.201 1.201 24 C 0.287 3.713 25 O -0.329 6.329 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.266 0.734 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.322 11.088 0.920 11.365 hybrid contribution 0.259 -0.112 0.304 0.415 sum -2.063 10.975 1.224 11.235 Atomic orbital electron populations 1.21912 0.90187 1.04163 1.03166 1.20226 0.96582 0.88281 0.88448 1.19666 1.00159 0.95256 0.92442 1.22152 0.90498 0.94168 1.00131 1.21256 0.99736 0.94624 0.97676 1.21096 0.95436 1.01085 0.89970 1.20987 1.13501 0.95013 0.83711 1.43614 0.97684 1.00712 1.02872 1.94516 1.46610 1.02856 1.94144 1.94543 1.53986 1.69423 1.19895 1.20698 0.94144 0.90975 1.00053 1.45690 1.56756 1.30375 1.07634 1.16418 0.80029 0.81546 0.83732 1.90841 1.49341 1.41681 1.61852 1.41799 1.43674 1.23439 1.04280 1.19461 1.06770 1.20966 1.00621 0.87645 1.25336 0.95389 0.95802 0.98759 1.69903 1.11492 1.40992 1.23354 0.85832 0.80268 0.78390 0.79954 1.18892 1.20446 1.20147 1.19731 0.82118 0.81311 0.88185 1.90556 1.57917 1.68325 1.16069 0.90401 0.91538 0.90164 0.81586 0.83175 0.83014 0.83222 0.73370 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.97 37.16 0.33 -1.58 16 2 C 0.16 2.60 1.16 -133.25 -0.15 2.45 16 3 C -0.07 -1.03 4.89 -104.62 -0.51 -1.55 16 4 C -0.05 -0.68 9.18 -39.58 -0.36 -1.05 16 5 C -0.11 -1.19 10.05 -39.58 -0.40 -1.58 16 6 C -0.06 -0.61 9.56 -39.58 -0.38 -0.99 16 7 C -0.05 -0.63 6.85 -79.95 -0.55 -1.18 16 8 N 0.03 0.47 4.45 33.96 0.15 0.62 16 9 O -0.17 -2.40 18.45 -29.46 -0.54 -2.95 16 10 O -0.16 -2.44 18.45 -29.46 -0.54 -2.99 16 11 C -0.04 -0.51 8.86 -39.58 -0.35 -0.86 16 12 N -0.74 -12.72 5.37 -54.03 -0.29 -13.01 16 13 C 0.68 15.59 8.57 -88.02 -0.75 14.83 16 14 O -0.56 -14.50 17.62 5.35 0.09 -14.40 16 15 N -0.40 -9.90 2.69 -65.56 -0.18 -10.08 16 16 C -0.35 -9.45 9.46 -14.76 -0.14 -9.59 16 17 H 0.11 2.84 7.91 -52.49 -0.41 2.43 16 18 C 0.06 1.52 4.82 -17.50 -0.08 1.44 16 19 N -0.83 -22.00 11.19 55.49 0.62 -21.38 16 20 Si 0.93 20.02 29.60 -169.99 -5.03 14.99 16 21 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 24 C 0.50 11.02 5.72 -10.55 -0.06 10.96 16 25 O -0.46 -10.82 13.25 5.60 0.07 -10.74 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.17 2.47 5.60 -52.49 -0.29 2.18 16 30 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.15 1.32 7.61 -52.49 -0.40 0.92 16 32 H 0.15 1.77 6.67 -52.49 -0.35 1.42 16 33 H 0.42 5.86 8.19 -40.82 -0.33 5.52 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -31.68 307.27 -7.04 -38.72 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -2.62 Total: 5.28 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -3.41 Total: 11.31 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.31 Total: -43.85 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.92 Total: -31.08 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.68 -7.04 -38.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031657917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.579 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds