Wall clock time and date at job start Fri Apr 10 2020 14:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 110.53462 * 2 1 4 4 C 1.38265 * 120.00293 * 92.82664 * 3 2 1 5 5 C 1.38214 * 120.00059 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00092 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00002 * 359.95878 * 6 5 4 8 8 N 1.48018 * 120.00083 * 180.02562 * 7 6 5 9 9 O 1.21804 * 119.99831 * 359.97438 * 8 7 6 10 10 O 1.21802 * 120.00183 * 180.02562 * 8 7 6 11 11 C 1.38212 * 120.00231 * 272.55587 * 3 2 1 12 12 N 1.47308 * 110.60268 * 237.00093 * 2 1 3 13 13 C 1.34526 * 106.62035 * 241.25420 * 12 2 1 14 14 O 1.21520 * 123.77354 * 180.20954 * 13 12 2 15 15 N 1.33794 * 112.45633 * 0.37913 * 13 12 2 16 16 C 1.37511 * 124.17752 * 179.86641 * 15 13 12 17 17 H 1.08002 * 120.00058 * 326.86714 * 16 15 13 18 18 C 1.38888 * 120.00185 * 146.59620 * 16 15 13 19 19 N 1.31384 * 120.00020 * 340.43152 * 18 16 15 20 20 Si 1.86806 * 120.00226 * 160.43273 * 18 16 15 21 21 H 1.48498 * 109.46828 * 60.00003 * 20 18 16 22 22 H 1.48499 * 109.47084 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47068 * 299.99836 * 20 18 16 24 24 C 1.34761 * 111.64451 * 359.59872 * 15 13 12 25 25 O 1.21233 * 127.16057 * 180.19466 * 24 15 13 26 26 H 1.08995 * 109.46994 * 297.87428 * 1 2 3 27 27 H 1.09001 * 109.46920 * 57.87305 * 1 2 3 28 28 H 1.09001 * 109.46766 * 177.87281 * 1 2 3 29 29 H 1.07997 * 119.99621 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.99668 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.99848 * 179.97438 * 6 5 4 32 32 H 1.08008 * 119.99378 * 359.97438 * 11 3 2 33 33 H 0.96996 * 126.69006 * 61.50459 * 12 2 1 34 34 H 0.96999 * 120.00471 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3565 2.0379 1.1959 5 6 2.8408 3.3325 1.1959 6 6 3.0280 4.0005 0.0000 7 6 2.7316 3.3735 -1.1956 8 7 2.9325 4.0885 -2.4759 9 8 3.3586 5.2296 -2.4759 10 8 2.6709 3.5362 -3.5295 11 6 2.2511 2.0771 -1.1957 12 7 2.0484 -0.7510 -1.1564 13 6 2.7641 -1.7762 -0.6600 14 8 3.3371 -2.5965 -1.3496 15 7 2.7716 -1.7938 0.6778 16 6 3.4260 -2.7374 1.4343 17 1 3.5112 -3.7526 1.0758 18 6 3.9822 -2.3837 2.6568 19 7 4.2315 -1.1218 2.9246 20 14 4.3759 -3.7020 3.9203 21 1 5.3526 -4.6620 3.3461 22 1 4.9578 -3.0692 5.1311 23 1 3.1307 -4.4230 4.2879 24 6 2.0634 -0.7692 1.1924 25 8 1.8885 -0.5158 2.3649 26 1 -0.3633 0.4804 0.9084 27 1 -0.3633 0.5465 -0.8703 28 1 -0.3633 -1.0270 -0.0381 29 1 2.2098 1.5162 2.1301 30 1 3.0730 3.8221 2.1300 31 1 3.4060 5.0121 0.0000 32 1 2.0230 1.5858 -2.1302 33 1 1.9050 -0.5442 -2.0932 34 1 4.6203 -0.8747 3.7782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031657919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:47 Heat of formation + Delta-G solvation = -5.504621 kcal Electronic energy + Delta-G solvation = -25348.328270 eV Core-core repulsion = 21444.189460 eV Total energy + Delta-G solvation = -3904.138810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19974 -41.68759 -39.30032 -37.34173 -36.55185 -35.65873 -34.49050 -32.30473 -31.92042 -31.11131 -29.51070 -26.61533 -25.95023 -24.45915 -22.73224 -22.44691 -21.01981 -20.52354 -18.81311 -18.63142 -17.75683 -17.50897 -16.80312 -16.28126 -16.07434 -15.46211 -15.26652 -14.89894 -14.35353 -14.25861 -13.96488 -13.79503 -13.50306 -12.93060 -12.62517 -12.35106 -12.20673 -12.14065 -11.77931 -11.58353 -11.45762 -11.16519 -11.13578 -11.13265 -10.99849 -10.54060 -9.84665 -9.56235 -9.46399 -9.40345 -9.03755 -8.86662 -8.14889 -6.60282 -4.36403 -0.11246 0.86174 1.39813 1.42503 2.66955 3.10705 3.14556 3.18085 3.23159 3.38145 3.94630 4.14402 4.21853 4.25341 4.40458 4.67675 4.85975 4.90002 4.96816 5.05288 5.11119 5.27365 5.43864 5.58594 5.67925 5.70400 6.02087 6.08964 6.17898 6.22408 6.39457 6.54503 7.27470 7.39273 7.66594 7.75773 7.98273 8.51699 8.79942 9.00250 9.56454 10.49428 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.004952 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.673940 B = 5652.417439 C = 6160.457912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.157 3.843 3 C -0.076 4.076 4 C -0.039 4.039 5 C -0.115 4.115 6 C -0.056 4.056 7 C -0.052 4.052 8 N 0.034 4.966 9 O -0.168 6.168 10 O -0.165 6.165 11 C -0.040 4.040 12 N -0.739 5.739 13 C 0.679 3.321 14 O -0.561 6.561 15 N -0.401 5.401 16 C -0.352 4.352 17 H 0.105 0.895 18 C 0.059 3.941 19 N -0.828 5.828 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.500 3.500 25 O -0.458 6.458 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.424 0.576 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 8.915 -1.878 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 C -0.078 4.078 4 C -0.057 4.057 5 C -0.134 4.134 6 C -0.075 4.075 7 C -0.135 4.135 8 N 0.552 4.448 9 O -0.383 6.383 10 O -0.381 6.381 11 C -0.059 4.059 12 N -0.404 5.404 13 C 0.383 3.617 14 O -0.437 6.437 15 N -0.132 5.132 16 C -0.477 4.477 17 H 0.123 0.877 18 C -0.152 4.152 19 N -0.460 5.460 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.194 1.194 24 C 0.286 3.714 25 O -0.329 6.329 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.186 0.814 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.266 0.734 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.267 8.302 -0.766 10.430 hybrid contribution 0.408 -0.081 -0.321 0.526 sum -5.859 8.220 -1.087 10.153 Atomic orbital electron populations 1.21932 0.90327 1.03848 1.03485 1.20243 0.96266 0.88595 0.88435 1.19631 1.00602 0.95098 0.92454 1.22163 0.89491 0.93817 1.00238 1.21245 0.99774 0.94748 0.97595 1.21081 0.95356 1.01078 0.90006 1.20954 1.13974 0.94992 0.83590 1.43618 0.97585 1.00694 1.02891 1.94511 1.46771 1.02830 1.94177 1.94530 1.54201 1.69364 1.19970 1.20667 0.94325 0.90986 0.99960 1.45691 1.57145 1.29956 1.07653 1.16435 0.79591 0.81944 0.83726 1.90843 1.48886 1.42039 1.61950 1.41778 1.41261 1.25857 1.04274 1.19382 1.37025 0.90461 1.00843 0.87698 1.25330 0.94054 0.97069 0.98776 1.69879 1.35466 1.17025 1.23636 0.85904 0.78957 0.80138 0.79116 1.19573 1.20676 1.19408 1.19750 0.80277 0.83211 0.88204 1.90556 1.56975 1.69250 1.16132 0.90107 0.91251 0.90685 0.81351 0.83286 0.83132 0.83395 0.73368 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.96 37.16 0.33 -1.43 16 2 C 0.16 2.59 1.16 -133.24 -0.15 2.44 16 3 C -0.08 -1.15 4.89 -104.62 -0.51 -1.66 16 4 C -0.04 -0.58 9.18 -39.58 -0.36 -0.94 16 5 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 6 C -0.06 -0.68 9.56 -39.58 -0.38 -1.06 16 7 C -0.05 -0.73 6.85 -79.95 -0.55 -1.28 16 8 N 0.03 0.52 4.45 33.96 0.15 0.67 16 9 O -0.17 -2.58 18.45 -29.46 -0.54 -3.12 16 10 O -0.17 -2.61 18.45 -29.46 -0.54 -3.15 16 11 C -0.04 -0.56 8.86 -39.58 -0.35 -0.91 16 12 N -0.74 -12.70 5.37 -54.03 -0.29 -12.99 16 13 C 0.68 15.57 8.57 -88.02 -0.75 14.81 16 14 O -0.56 -14.49 17.62 5.35 0.09 -14.39 16 15 N -0.40 -9.86 2.69 -65.57 -0.18 -10.04 16 16 C -0.35 -9.37 9.46 -14.76 -0.14 -9.51 16 17 H 0.11 2.80 7.91 -52.49 -0.41 2.38 16 18 C 0.06 1.53 4.82 -17.50 -0.08 1.44 16 19 N -0.83 -21.73 11.19 55.49 0.62 -21.11 16 20 Si 0.93 19.99 29.60 -169.99 -5.03 14.96 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C 0.50 10.95 5.72 -10.56 -0.06 10.89 16 25 O -0.46 -10.76 13.27 5.60 0.07 -10.69 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.17 2.84 5.61 -52.49 -0.29 2.55 16 30 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.15 1.50 7.61 -52.49 -0.40 1.10 16 32 H 0.15 1.86 6.66 -52.48 -0.35 1.51 16 33 H 0.42 5.87 8.19 -40.82 -0.33 5.53 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -31.40 307.26 -7.04 -38.44 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.62 Total: 5.78 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -3.41 Total: 11.02 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.31 Total: -43.48 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.92 Total: -31.35 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.40 -7.04 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031657919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.936 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds