Wall clock time and date at job start Fri Apr 10 2020 14:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 110.53462 * 2 1 4 4 C 1.38265 * 120.00293 * 92.82664 * 3 2 1 5 5 C 1.38214 * 120.00059 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00092 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00002 * 359.95878 * 6 5 4 8 8 N 1.48018 * 120.00083 * 180.02562 * 7 6 5 9 9 O 1.21804 * 119.99831 * 359.97438 * 8 7 6 10 10 O 1.21802 * 120.00183 * 180.02562 * 8 7 6 11 11 C 1.38212 * 120.00231 * 272.55587 * 3 2 1 12 12 N 1.47308 * 110.60268 * 237.00093 * 2 1 3 13 13 C 1.34526 * 106.62035 * 241.25420 * 12 2 1 14 14 O 1.21520 * 123.77354 * 180.20954 * 13 12 2 15 15 N 1.33794 * 112.45633 * 0.37913 * 13 12 2 16 16 C 1.37511 * 124.17752 * 179.86641 * 15 13 12 17 17 H 1.08002 * 120.00058 * 326.86714 * 16 15 13 18 18 C 1.38888 * 120.00185 * 146.59620 * 16 15 13 19 19 N 1.31384 * 120.00020 * 340.43152 * 18 16 15 20 20 Si 1.86806 * 120.00226 * 160.43273 * 18 16 15 21 21 H 1.48498 * 109.46828 * 60.00003 * 20 18 16 22 22 H 1.48499 * 109.47084 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47068 * 299.99836 * 20 18 16 24 24 C 1.34761 * 111.64451 * 359.59872 * 15 13 12 25 25 O 1.21233 * 127.16057 * 180.19466 * 24 15 13 26 26 H 1.08995 * 109.46994 * 297.87428 * 1 2 3 27 27 H 1.09001 * 109.46920 * 57.87305 * 1 2 3 28 28 H 1.09001 * 109.46766 * 177.87281 * 1 2 3 29 29 H 1.07997 * 119.99621 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.99668 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.99848 * 179.97438 * 6 5 4 32 32 H 1.08008 * 119.99378 * 359.97438 * 11 3 2 33 33 H 0.96996 * 126.69006 * 61.50459 * 12 2 1 34 34 H 0.96999 * 120.00471 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3565 2.0379 1.1959 5 6 2.8408 3.3325 1.1959 6 6 3.0280 4.0005 0.0000 7 6 2.7316 3.3735 -1.1956 8 7 2.9325 4.0885 -2.4759 9 8 3.3586 5.2296 -2.4759 10 8 2.6709 3.5362 -3.5295 11 6 2.2511 2.0771 -1.1957 12 7 2.0484 -0.7510 -1.1564 13 6 2.7641 -1.7762 -0.6600 14 8 3.3371 -2.5965 -1.3496 15 7 2.7716 -1.7938 0.6778 16 6 3.4260 -2.7374 1.4343 17 1 3.5112 -3.7526 1.0758 18 6 3.9822 -2.3837 2.6568 19 7 4.2315 -1.1218 2.9246 20 14 4.3759 -3.7020 3.9203 21 1 5.3526 -4.6620 3.3461 22 1 4.9578 -3.0692 5.1311 23 1 3.1307 -4.4230 4.2879 24 6 2.0634 -0.7692 1.1924 25 8 1.8885 -0.5158 2.3649 26 1 -0.3633 0.4804 0.9084 27 1 -0.3633 0.5465 -0.8703 28 1 -0.3633 -1.0270 -0.0381 29 1 2.2098 1.5162 2.1301 30 1 3.0730 3.8221 2.1300 31 1 3.4060 5.0121 0.0000 32 1 2.0230 1.5858 -2.1302 33 1 1.9050 -0.5442 -2.0932 34 1 4.6203 -0.8747 3.7782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031657919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:47 Heat of formation + Delta-G solvation = -25.470118 kcal Electronic energy + Delta-G solvation = -25349.194039 eV Core-core repulsion = 21444.189460 eV Total energy + Delta-G solvation = -3905.004579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.47681 -43.17772 -40.51906 -39.10672 -37.72652 -37.22494 -36.30822 -33.99243 -33.15114 -32.48350 -30.68674 -28.01094 -27.53504 -25.81986 -24.08714 -23.71489 -22.64158 -21.94227 -20.07050 -19.84351 -19.45742 -18.65833 -18.28606 -17.81995 -17.52089 -17.01473 -16.64073 -16.56383 -15.81800 -15.77968 -15.46849 -15.14424 -14.84659 -14.50269 -13.86795 -13.69679 -13.41601 -13.34868 -13.25588 -12.99971 -12.86109 -12.76155 -12.57014 -12.32507 -12.32272 -12.20523 -11.67679 -11.32327 -10.83352 -10.66044 -10.55187 -10.30005 -10.01410 -8.53616 -6.37025 -1.25595 -0.19936 0.26209 0.29380 0.98015 1.38094 1.44110 1.50184 1.75234 2.12834 2.32140 2.39457 2.64152 2.96782 3.07311 3.25556 3.43653 3.71424 3.78237 3.91212 3.93324 4.10129 4.44765 4.57341 4.59579 4.65379 4.80287 4.98606 5.03699 5.07835 5.12551 5.30175 5.43646 5.81262 5.92948 6.22809 6.47448 6.63827 7.07467 7.11224 7.73099 8.56140 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.004952 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.673940 B = 5652.417439 C = 6160.457912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 C -0.088 4.088 4 C -0.053 4.053 5 C -0.101 4.101 6 C -0.043 4.043 7 C -0.061 4.061 8 N 0.034 4.966 9 O -0.165 6.165 10 O -0.185 6.185 11 C -0.037 4.037 12 N -0.713 5.713 13 C 0.672 3.328 14 O -0.602 6.602 15 N -0.425 5.425 16 C -0.387 4.387 17 H 0.090 0.910 18 C 0.021 3.979 19 N -0.852 5.852 20 Si 0.995 3.005 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.266 1.266 24 C 0.495 3.505 25 O -0.478 6.478 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.182 0.818 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.442 0.558 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 10.732 -1.637 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.078 3.922 3 C -0.090 4.090 4 C -0.071 4.071 5 C -0.120 4.120 6 C -0.062 4.062 7 C -0.144 4.144 8 N 0.551 4.449 9 O -0.381 6.381 10 O -0.396 6.396 11 C -0.056 4.056 12 N -0.379 5.379 13 C 0.375 3.625 14 O -0.481 6.481 15 N -0.157 5.157 16 C -0.513 4.513 17 H 0.107 0.893 18 C -0.188 4.188 19 N -0.484 5.484 20 Si 0.817 3.183 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.190 1.190 24 C 0.283 3.717 25 O -0.351 6.351 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.199 0.801 31 H 0.195 0.805 32 H 0.178 0.822 33 H 0.288 0.712 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.895 10.145 -0.572 12.279 hybrid contribution 0.578 -0.538 -0.376 0.875 sum -6.317 9.607 -0.948 11.536 Atomic orbital electron populations 1.22007 0.87013 1.04480 1.05696 1.20219 0.98426 0.88447 0.85065 1.19418 1.02199 0.94194 0.93212 1.22096 0.90651 0.95182 0.99193 1.21525 0.98048 0.93407 0.98987 1.21422 0.93687 1.02019 0.89044 1.21102 1.14590 0.95135 0.83580 1.43761 0.97349 1.00673 1.03157 1.94499 1.46425 1.02954 1.94265 1.94535 1.55077 1.69491 1.20513 1.20665 0.94034 0.91153 0.99792 1.45473 1.55459 1.28162 1.08855 1.16578 0.79943 0.82642 0.83312 1.90796 1.50883 1.43873 1.62587 1.42045 1.42115 1.26535 1.05007 1.19483 1.38876 0.90744 1.02184 0.89254 1.26173 0.93473 0.99196 0.99944 1.69938 1.36052 1.18396 1.24049 0.84992 0.78846 0.77671 0.76818 1.19108 1.19606 1.19046 1.20524 0.79180 0.82604 0.89420 1.90527 1.57402 1.69557 1.17600 0.89211 0.87627 0.90990 0.83549 0.80096 0.80451 0.82245 0.71187 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.96 71.98 0.65 -2.50 16 2 C 0.17 5.43 1.16 2.24 0.00 5.44 16 3 C -0.09 -2.52 4.89 -19.87 -0.10 -2.62 16 4 C -0.05 -1.49 9.18 22.27 0.20 -1.28 16 5 C -0.10 -2.13 10.05 22.27 0.22 -1.90 16 6 C -0.04 -0.89 9.56 22.27 0.21 -0.67 16 7 C -0.06 -1.54 6.85 36.37 0.25 -1.29 16 8 N 0.03 0.96 4.45 -46.46 -0.21 0.75 16 9 O -0.16 -4.61 18.45 18.88 0.35 -4.26 16 10 O -0.18 -5.51 18.45 18.88 0.35 -5.16 16 11 C -0.04 -0.95 8.86 22.27 0.20 -0.75 16 12 N -0.71 -23.99 5.37 -443.27 -2.38 -26.37 16 13 C 0.67 31.41 8.57 179.44 1.54 32.95 16 14 O -0.60 -32.05 17.62 -3.78 -0.07 -32.12 16 15 N -0.43 -21.49 2.69 -598.62 -1.61 -23.10 16 16 C -0.39 -21.37 9.46 83.96 0.79 -20.58 16 17 H 0.09 5.02 7.91 -2.91 -0.02 5.00 16 18 C 0.02 1.11 4.82 84.92 0.41 1.52 16 19 N -0.85 -45.39 11.19 21.65 0.24 -45.15 16 20 Si 0.99 41.42 29.60 68.60 2.03 43.45 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 C 0.49 21.91 5.72 87.94 0.50 22.42 16 25 O -0.48 -22.86 13.27 -2.88 -0.04 -22.90 16 26 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.15 4.90 5.61 -2.91 -0.02 4.88 16 30 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.18 2.74 7.61 -2.91 -0.02 2.72 16 32 H 0.16 3.62 6.66 -2.91 -0.02 3.60 16 33 H 0.44 11.55 8.19 -92.71 -0.76 10.79 16 34 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -70.26 307.26 3.98 -66.28 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.43 Total: 17.87 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 4.88 Total: 30.71 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -3.96 Total: -93.87 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: 0.59 Total: -64.44 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -70.26 3.98 -66.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031657919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.809 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds