Wall clock time and date at job start Fri Apr 10 2020 14:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30006 * 127.40161 * 2 1 4 4 O 1.20858 * 113.53202 * 179.97438 * 3 2 1 5 5 C 1.34452 * 113.07129 * 0.02562 * 4 3 2 6 6 N 1.32347 * 134.97497 * 179.97438 * 5 4 3 7 7 C 1.31453 * 121.78579 * 179.72731 * 6 5 4 8 8 C 1.40077 * 121.51501 * 0.59743 * 7 6 5 9 9 C 1.47605 * 120.51001 * 179.69199 * 8 7 6 10 10 O 1.21608 * 119.99743 * 141.53727 * 9 8 7 11 11 N 1.34776 * 120.00191 * 321.53664 * 9 8 7 12 12 C 1.36909 * 119.99955 * 5.40846 * 11 9 8 13 13 H 1.07997 * 119.99823 * 316.01752 * 12 11 9 14 14 C 1.39023 * 119.99900 * 136.29004 * 12 11 9 15 15 N 1.31383 * 119.99646 * 169.57522 * 14 12 11 16 16 Si 1.86792 * 120.00188 * 349.57586 * 14 12 11 17 17 H 1.48507 * 109.47317 * 94.90876 * 16 14 12 18 18 H 1.48500 * 109.47411 * 214.90697 * 16 14 12 19 19 H 1.48498 * 109.47254 * 334.90984 * 16 14 12 20 20 C 1.46494 * 120.00052 * 185.40560 * 11 9 8 21 21 C 1.50704 * 109.47159 * 83.82261 * 20 11 9 22 22 O 1.20827 * 119.99946 * 5.26380 * 21 20 11 23 23 O 1.34224 * 120.00024 * 185.27153 * 21 20 11 24 24 C 1.39964 * 118.98296 * 359.42208 * 8 7 6 25 25 C 1.38661 * 117.70300 * 0.27221 * 24 8 7 26 26 H 1.08992 * 109.47016 * 269.99844 * 1 2 3 27 27 H 1.09005 * 109.46768 * 30.00019 * 1 2 3 28 28 H 1.08998 * 109.47123 * 149.99544 * 1 2 3 29 29 H 1.08003 * 119.24614 * 180.31803 * 7 6 5 30 30 H 0.96999 * 119.99621 * 180.02562 * 15 14 12 31 31 H 1.09005 * 109.47321 * 203.81875 * 20 11 9 32 32 H 1.08999 * 109.47332 * 323.82300 * 20 11 9 33 33 H 0.96707 * 117.00041 * 179.97438 * 23 21 20 34 34 H 1.08004 * 121.15393 * 180.25620 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2966 1.0328 0.0000 4 8 3.4700 0.7431 0.0005 5 6 3.6850 -0.5842 0.0004 6 7 4.7588 -1.3578 0.0003 7 6 4.6674 -2.6692 0.0055 8 6 3.4252 -3.3166 -0.0011 9 6 3.3485 -4.7907 -0.0018 10 8 2.4899 -5.3551 0.6487 11 7 4.2298 -5.5110 -0.7235 12 6 5.2630 -4.8836 -1.3664 13 1 5.0833 -3.9700 -1.9135 14 6 6.5424 -5.4256 -1.3196 15 7 7.4876 -4.9464 -2.0962 16 14 6.9175 -6.8351 -0.1526 17 1 6.7789 -8.1256 -0.8743 18 1 8.3057 -6.6997 0.3571 19 1 5.9661 -6.8007 0.9871 20 6 4.0823 -6.9653 -0.8200 21 6 3.0978 -7.2991 -1.9110 22 8 2.6454 -6.4204 -2.6061 23 8 2.7233 -8.5725 -2.1105 24 6 2.2579 -2.5444 -0.0011 25 6 2.3976 -1.1648 -0.0004 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 5.5707 -3.2611 0.0105 30 1 8.3801 -5.3248 -2.0638 31 1 5.0482 -7.4139 -1.0526 32 1 3.7188 -7.3575 0.1298 33 1 2.0893 -8.7374 -2.8219 34 1 1.2819 -3.0069 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738955408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:35 Heat of formation + Delta-G solvation = -32.145797 kcal Electronic energy + Delta-G solvation = -24906.160595 eV Core-core repulsion = 21000.866537 eV Total energy + Delta-G solvation = -3905.294058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.77354 -41.86122 -40.94684 -39.69563 -37.30893 -36.81754 -35.92843 -34.11034 -33.45061 -32.47110 -30.20292 -29.51437 -27.27898 -26.29156 -25.03041 -23.31361 -22.27293 -21.53652 -20.04019 -19.30464 -19.12471 -18.99178 -18.88058 -17.94411 -17.32392 -17.19613 -16.77526 -16.59163 -15.86853 -15.67039 -15.00310 -14.64687 -14.60011 -14.46692 -14.37427 -14.28267 -14.09322 -13.90501 -13.71277 -13.58071 -12.96827 -12.63375 -12.57706 -12.31316 -11.98422 -11.95593 -11.67226 -11.45650 -10.93675 -10.59838 -10.37262 -10.21959 -9.96186 -8.52809 -6.34903 -0.53617 -0.49518 0.98329 1.13657 1.15090 1.24872 1.34801 1.45666 1.53512 1.95990 2.15110 2.38291 2.50200 2.78726 2.92885 3.00245 3.29446 3.65076 3.71074 3.79568 3.93221 4.13187 4.19521 4.34249 4.44064 4.52756 4.68213 4.76012 4.86341 5.14331 5.17659 5.25208 5.57530 5.92857 6.04393 6.40219 6.75860 6.96847 7.02479 7.11027 7.42910 8.57945 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.005309 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.237882 B = 5272.706989 C = 6372.855849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.089 3.911 3 N -0.340 5.340 4 O 0.058 5.942 5 C 0.208 3.792 6 N -0.492 5.492 7 C 0.220 3.780 8 C -0.185 4.185 9 C 0.549 3.451 10 O -0.589 6.589 11 N -0.449 5.449 12 C -0.354 4.354 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.885 5.885 16 Si 0.917 3.083 17 H -0.246 1.246 18 H -0.278 1.278 19 H -0.243 1.243 20 C 0.097 3.903 21 C 0.472 3.528 22 O -0.537 6.537 23 O -0.506 6.506 24 C 0.056 3.944 25 C -0.240 4.240 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.197 0.803 30 H 0.286 0.714 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.426 0.574 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -1.169 3.982 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 N -0.053 5.053 4 O 0.007 5.993 5 C 0.026 3.974 6 N -0.210 5.210 7 C 0.057 3.943 8 C -0.190 4.190 9 C 0.339 3.661 10 O -0.474 6.474 11 N -0.169 5.169 12 C -0.482 4.482 13 H 0.095 0.905 14 C -0.172 4.172 15 N -0.520 5.520 16 Si 0.740 3.260 17 H -0.171 1.171 18 H -0.204 1.204 19 H -0.166 1.166 20 C -0.027 4.027 21 C 0.314 3.686 22 O -0.426 6.426 23 O -0.319 6.319 24 C 0.028 3.972 25 C -0.246 4.246 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.213 0.787 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.151 0.849 33 H 0.288 0.712 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.358 0.640 4.318 10.326 hybrid contribution -0.244 -1.628 -0.676 1.779 sum -9.602 -0.988 3.642 10.317 Atomic orbital electron populations 1.20541 0.81012 1.05961 1.05792 1.24967 0.99930 0.85227 0.97983 1.73443 0.88548 1.23823 1.19524 1.84822 1.20914 1.19393 1.74217 1.22098 0.91520 0.86473 0.97277 1.66636 1.30428 1.05568 1.18380 1.23944 0.98989 0.86478 0.84929 1.20749 0.95162 0.94696 1.08386 1.17944 0.82315 0.86524 0.79359 1.90663 1.38951 1.72428 1.45339 1.43185 1.25773 1.04197 1.43732 1.18876 0.85892 1.10952 1.32448 0.90479 1.26031 0.94677 0.99921 0.96606 1.69732 1.04124 1.42491 1.35625 0.86240 0.79212 0.79735 0.80808 1.17137 1.20442 1.16592 1.21535 0.98267 0.84823 0.98057 1.24117 0.80242 0.80350 0.83904 1.90679 1.54636 1.49865 1.47444 1.84480 1.61723 1.28318 1.57393 1.20979 0.99483 0.89339 0.87424 1.20980 0.94588 0.95851 1.13165 0.87180 0.88236 0.87859 0.78682 0.90346 0.86721 0.84871 0.71189 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.50 71.24 0.75 -0.44 16 2 C 0.09 2.40 7.59 45.02 0.34 2.75 16 3 N -0.34 -10.67 11.94 -43.54 -0.52 -11.19 16 4 O 0.06 2.06 11.12 67.74 0.75 2.81 16 5 C 0.21 7.87 8.75 85.35 0.75 8.61 16 6 N -0.49 -20.26 10.36 -307.23 -3.18 -23.44 16 7 C 0.22 9.06 8.99 85.20 0.77 9.83 16 8 C -0.18 -7.36 5.41 -19.94 -0.11 -7.47 16 9 C 0.55 23.55 7.21 86.72 0.63 24.18 16 10 O -0.59 -25.99 16.57 -4.06 -0.07 -26.05 16 11 N -0.45 -19.55 1.66 -643.13 -1.07 -20.62 16 12 C -0.35 -16.95 6.67 84.09 0.56 -16.39 16 13 H 0.08 4.17 6.79 -2.91 -0.02 4.15 16 14 C 0.03 1.63 5.39 84.95 0.46 2.09 16 15 N -0.89 -45.18 13.96 21.68 0.30 -44.88 16 16 Si 0.92 34.78 24.67 68.60 1.69 36.48 16 17 H -0.25 -8.50 6.85 99.48 0.68 -7.82 16 18 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.24 -8.78 6.88 99.48 0.68 -8.10 16 20 C 0.10 3.68 4.29 85.64 0.37 4.04 16 21 C 0.47 17.31 8.34 71.24 0.59 17.91 16 22 O -0.54 -23.52 17.13 21.96 0.38 -23.15 16 23 O -0.51 -13.38 13.42 -51.36 -0.69 -14.07 16 24 C 0.06 1.89 9.82 22.79 0.22 2.12 16 25 C -0.24 -7.93 6.55 -20.25 -0.13 -8.06 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.20 8.44 5.91 -2.91 -0.02 8.42 16 30 H 0.29 13.52 8.31 -92.71 -0.77 12.75 16 31 H 0.12 4.18 3.56 -2.38 -0.01 4.17 16 32 H 0.13 4.51 7.54 -2.39 -0.02 4.49 16 33 H 0.43 7.08 9.10 -74.05 -0.67 6.40 16 34 H 0.17 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -64.95 304.87 3.27 -61.68 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.48 Total: 23.27 kcal Atomic # 6 Polarization: 33.97 SS G_CDS: 5.19 Total: 39.17 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.47 Total: -100.13 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: 0.37 Total: -60.46 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 1.69 Total: 36.48 kcal Total: -64.95 3.27 -61.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738955408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -64.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds