Wall clock time and date at job start Fri Apr 10 2020 14:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34754 * 117.00472 * 2 1 4 4 O 1.21515 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.47385 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.40996 * 119.89014 * 0.02732 * 5 3 2 7 7 C 1.38871 * 118.70885 * 179.97438 * 6 5 3 8 8 C 1.43198 * 120.73970 * 179.97438 * 7 6 5 9 9 N 6.01584 * 161.48186 * 180.02562 * 2 1 3 10 10 C 1.46520 * 118.52292 * 359.78514 * 7 6 5 11 11 O 1.21823 * 120.16348 * 180.22391 * 10 7 6 12 12 N 1.34645 * 119.67687 * 0.45904 * 10 7 6 13 13 C 1.46499 * 119.35128 * 179.78945 * 12 10 7 14 14 C 1.50701 * 109.46992 * 269.72557 * 13 12 10 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.47600 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00019 * 21 19 17 25 25 C 1.34297 * 121.30042 * 359.51047 * 12 10 7 26 26 H 1.08996 * 109.47541 * 300.00423 * 1 2 3 27 27 H 1.09004 * 109.46540 * 59.99992 * 1 2 3 28 28 H 1.08993 * 109.47347 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.64760 * 359.94525 * 6 5 3 30 30 H 1.09002 * 109.47391 * 149.72547 * 13 12 10 31 31 H 1.09001 * 109.46813 * 29.72604 * 13 12 10 32 32 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 33 33 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 34 34 H 1.08008 * 119.21107 * 180.25793 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2198 0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3013 0.0937 0.0005 7 6 5.6863 0.1950 0.0005 8 6 6.5061 -0.9792 0.0010 9 7 7.1564 -1.9107 -0.0009 10 6 6.2903 1.5299 -0.0043 11 8 7.5022 1.6534 -0.0085 12 7 5.4993 2.6195 0.0009 13 6 6.1107 3.9508 0.0007 14 6 6.3199 4.4076 1.4215 15 8 5.9911 3.6913 2.3435 16 7 6.8734 5.6116 1.6676 17 6 7.0642 6.0269 2.9602 18 1 6.7707 5.3895 3.7811 19 6 7.6343 7.2683 3.2140 20 7 7.9911 8.0442 2.2151 21 14 7.8950 7.8340 4.9751 22 1 8.7906 6.8782 5.6746 23 1 8.5152 9.1833 4.9750 24 1 6.5868 7.8900 5.6757 25 6 4.1608 2.5100 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.8201 -0.8731 0.0010 30 1 5.4538 4.6523 -0.5135 31 1 7.0713 3.9093 -0.5128 32 1 7.1367 6.1842 0.9303 33 1 8.3894 8.9107 2.3923 34 1 3.5585 3.4065 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318458648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:34 Heat of formation + Delta-G solvation = -85.439460 kcal Electronic energy + Delta-G solvation = -23807.371799 eV Core-core repulsion = 19899.766754 eV Total energy + Delta-G solvation = -3907.605045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73835 -40.38117 -38.33648 -37.29992 -36.63814 -36.49784 -34.68794 -34.05413 -31.53503 -30.76768 -28.95006 -27.81464 -25.37061 -24.92933 -23.71093 -22.08730 -20.11374 -19.26917 -18.22450 -17.95062 -17.47160 -17.18581 -16.93284 -16.50564 -16.35486 -15.70331 -15.29094 -14.59663 -14.29733 -14.26723 -13.93997 -13.66896 -13.57547 -13.43617 -13.28535 -12.80501 -12.76892 -12.55418 -12.21315 -12.06000 -11.95589 -11.71040 -11.16026 -11.03551 -10.84613 -10.57182 -10.54501 -10.39080 -10.22381 -9.72674 -8.82443 -8.24555 -8.21866 -6.62095 -4.04163 0.18942 0.92691 1.90528 2.36352 2.46414 2.86796 2.94072 3.06782 3.17315 3.21324 3.53108 3.66685 3.81187 4.01203 4.22770 4.35655 4.44065 4.55564 4.62672 4.87362 4.90625 4.96012 5.15067 5.23652 5.30112 5.39100 5.52867 5.55928 5.83471 6.01589 6.10166 6.61648 7.36910 7.51066 7.55743 7.67245 7.79331 8.31094 8.93799 9.23353 9.71103 10.54231 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.003785 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.508016 B = 7395.464913 C = 8635.358525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.533 3.467 4 O -0.512 6.512 5 C -0.264 4.264 6 C 0.087 3.913 7 C -0.168 4.168 8 C 0.285 3.715 9 N -0.421 5.421 10 C 0.547 3.453 11 O -0.499 6.499 12 N -0.453 5.453 13 C 0.068 3.932 14 C 0.416 3.584 15 O -0.585 6.585 16 N -0.542 5.542 17 C -0.305 4.305 18 H 0.106 0.894 19 C 0.029 3.971 20 N -0.893 5.893 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.280 3.720 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.158 0.842 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.396 0.604 33 H 0.276 0.724 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -9.396 -8.986 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.379 3.621 4 O -0.402 6.402 5 C -0.270 4.270 6 C 0.063 3.937 7 C -0.176 4.176 8 C -0.030 4.030 9 N -0.097 5.097 10 C 0.344 3.656 11 O -0.374 6.374 12 N -0.155 5.155 13 C -0.057 4.057 14 C 0.200 3.800 15 O -0.470 6.470 16 N -0.176 5.176 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.174 4.174 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.196 1.196 25 C 0.141 3.859 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.176 0.824 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.178 -10.680 -8.374 18.234 hybrid contribution -0.153 1.246 0.502 1.352 sum -12.331 -9.434 -7.872 17.407 Atomic orbital electron populations 1.23289 0.75608 1.03770 1.02822 1.86505 1.23749 1.32324 1.84628 1.20231 0.87721 0.81620 0.72541 1.90882 1.66509 1.35780 1.47004 1.17964 0.90527 0.92494 1.26062 1.21844 0.90811 0.98896 0.82169 1.17363 0.91151 0.87631 1.21432 1.24529 0.93125 0.92075 0.93237 1.81205 1.07024 1.11299 1.10180 1.17850 0.86778 0.83406 0.77607 1.90972 1.12563 1.85624 1.48252 1.44763 1.05844 1.09875 1.55009 1.22150 1.02566 0.80445 1.00491 1.19602 0.86846 0.84557 0.88944 1.90603 1.56576 1.55097 1.44757 1.41738 1.52012 1.14507 1.09385 1.19691 1.38635 1.01280 0.83856 0.87631 1.25326 0.96262 0.95786 1.00066 1.69591 1.40830 1.11240 1.31598 0.85856 0.78983 0.77751 0.81354 1.19664 1.20747 1.19645 1.22412 0.83689 0.99818 0.79982 0.91626 0.91725 0.87987 0.82396 0.86178 0.85511 0.77060 0.91382 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.36 -3.15 9.83 -40.64 -0.40 -3.55 16 3 C 0.53 5.66 7.88 34.45 0.27 5.93 16 4 O -0.51 -6.54 16.06 -19.28 -0.31 -6.85 16 5 C -0.26 -2.76 5.86 -105.15 -0.62 -3.37 16 6 C 0.09 0.88 9.43 -38.30 -0.36 0.52 16 7 C -0.17 -2.26 5.92 -104.40 -0.62 -2.88 16 8 C 0.29 4.34 15.06 -22.47 -0.34 4.00 16 9 N -0.42 -7.10 18.54 41.84 0.78 -6.32 16 10 C 0.55 8.85 7.58 -12.98 -0.10 8.75 16 11 O -0.50 -9.97 16.18 5.08 0.08 -9.88 16 12 N -0.45 -6.32 2.03 -118.63 -0.24 -6.57 16 13 C 0.07 0.97 5.78 -5.19 -0.03 0.94 16 14 C 0.42 8.78 7.84 -10.98 -0.09 8.69 16 15 O -0.58 -14.64 16.01 5.55 0.09 -14.56 16 16 N -0.54 -12.48 5.29 -10.96 -0.06 -12.54 16 17 C -0.31 -7.99 9.68 -14.94 -0.14 -8.14 16 18 H 0.11 2.92 7.16 -52.49 -0.38 2.55 16 19 C 0.03 0.73 5.50 -17.47 -0.10 0.64 16 20 N -0.89 -22.76 13.05 55.50 0.72 -22.04 16 21 Si 0.93 20.07 29.55 -169.99 -5.02 15.05 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C 0.28 3.15 9.79 -16.50 -0.16 2.99 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.16 1.15 7.65 -52.49 -0.40 0.74 16 30 H 0.12 1.16 7.98 -51.93 -0.41 0.75 16 31 H 0.13 1.76 7.37 -51.93 -0.38 1.38 16 32 H 0.40 8.50 7.90 -40.82 -0.32 8.17 16 33 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.19 1.71 7.47 -52.48 -0.39 1.32 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -34.82 326.98 -3.34 -38.16 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.69 Total: 4.79 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: -1.21 Total: 19.38 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 1.20 Total: -47.46 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.54 Total: -34.84 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.82 -3.34 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318458648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.282 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds