Wall clock time and date at job start Fri Apr 10 2020 14:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34754 * 117.00472 * 2 1 4 4 O 1.21515 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.47385 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.40996 * 119.89014 * 0.02732 * 5 3 2 7 7 C 1.38871 * 118.70885 * 179.97438 * 6 5 3 8 8 C 1.43198 * 120.73970 * 179.97438 * 7 6 5 9 9 N 6.01584 * 161.48186 * 180.02562 * 2 1 3 10 10 C 1.46520 * 118.52292 * 359.78514 * 7 6 5 11 11 O 1.21823 * 120.16348 * 180.22391 * 10 7 6 12 12 N 1.34645 * 119.67687 * 0.45904 * 10 7 6 13 13 C 1.46499 * 119.35128 * 179.78945 * 12 10 7 14 14 C 1.50701 * 109.46992 * 269.72557 * 13 12 10 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.47600 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00019 * 21 19 17 25 25 C 1.34297 * 121.30042 * 359.51047 * 12 10 7 26 26 H 1.08996 * 109.47541 * 300.00423 * 1 2 3 27 27 H 1.09004 * 109.46540 * 59.99992 * 1 2 3 28 28 H 1.08993 * 109.47347 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.64760 * 359.94525 * 6 5 3 30 30 H 1.09002 * 109.47391 * 149.72547 * 13 12 10 31 31 H 1.09001 * 109.46813 * 29.72604 * 13 12 10 32 32 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 33 33 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 34 34 H 1.08008 * 119.21107 * 180.25793 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2198 0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3013 0.0937 0.0005 7 6 5.6863 0.1950 0.0005 8 6 6.5061 -0.9792 0.0010 9 7 7.1564 -1.9107 -0.0009 10 6 6.2903 1.5299 -0.0043 11 8 7.5022 1.6534 -0.0085 12 7 5.4993 2.6195 0.0009 13 6 6.1107 3.9508 0.0007 14 6 6.3199 4.4076 1.4215 15 8 5.9911 3.6913 2.3435 16 7 6.8734 5.6116 1.6676 17 6 7.0642 6.0269 2.9602 18 1 6.7707 5.3895 3.7811 19 6 7.6343 7.2683 3.2140 20 7 7.9911 8.0442 2.2151 21 14 7.8950 7.8340 4.9751 22 1 8.7906 6.8782 5.6746 23 1 8.5152 9.1833 4.9750 24 1 6.5868 7.8900 5.6757 25 6 4.1608 2.5100 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.8201 -0.8731 0.0010 30 1 5.4538 4.6523 -0.5135 31 1 7.0713 3.9093 -0.5128 32 1 7.1367 6.1842 0.9303 33 1 8.3894 8.9107 2.3923 34 1 3.5585 3.4065 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318458648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:33 Heat of formation + Delta-G solvation = -109.853460 kcal Electronic energy + Delta-G solvation = -23808.430469 eV Core-core repulsion = 19899.766754 eV Total energy + Delta-G solvation = -3908.663716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.85160 -41.24045 -40.01412 -38.44603 -37.85229 -37.35680 -36.17577 -35.55130 -33.40025 -31.79954 -30.18517 -28.52041 -26.81380 -26.23690 -24.75313 -23.14756 -21.49566 -20.52416 -19.97894 -18.98317 -18.43612 -18.37606 -18.18053 -17.31511 -17.27908 -16.97189 -16.74658 -16.25224 -15.83683 -15.59965 -15.24104 -14.77685 -14.58898 -14.37208 -14.35495 -14.28507 -13.84790 -13.61417 -13.56715 -13.33114 -13.18347 -12.88285 -12.83501 -12.48833 -12.15260 -11.75217 -11.69418 -11.61752 -11.57878 -11.43062 -10.52123 -10.10435 -9.37831 -8.52688 -6.01895 -0.78474 -0.02874 0.82165 1.31786 1.36165 1.42396 1.48691 1.52036 1.86722 1.88675 1.93443 2.26630 2.55957 2.74246 3.04021 3.13269 3.24795 3.46221 3.52817 3.70491 3.98218 4.15026 4.25232 4.37441 4.44657 4.50035 4.55462 4.66411 4.88406 4.99431 5.35527 5.37108 5.53769 5.89162 6.38781 6.46005 6.52303 6.70875 7.03724 7.41437 7.94747 8.63279 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.003785 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.508016 B = 7395.464913 C = 8635.358525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.540 3.460 4 O -0.533 6.533 5 C -0.254 4.254 6 C 0.127 3.873 7 C -0.191 4.191 8 C 0.300 3.700 9 N -0.459 5.459 10 C 0.539 3.461 11 O -0.553 6.553 12 N -0.456 5.456 13 C 0.079 3.921 14 C 0.419 3.581 15 O -0.627 6.627 16 N -0.554 5.554 17 C -0.337 4.337 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.911 5.911 21 Si 0.989 3.011 22 H -0.277 1.277 23 H -0.269 1.269 24 H -0.268 1.268 25 C 0.281 3.719 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.194 0.806 30 H 0.178 0.822 31 H 0.134 0.866 32 H 0.402 0.598 33 H 0.280 0.720 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 -9.562 -9.722 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.386 3.614 4 O -0.424 6.424 5 C -0.260 4.260 6 C 0.103 3.897 7 C -0.200 4.200 8 C -0.014 4.014 9 N -0.137 5.137 10 C 0.338 3.662 11 O -0.433 6.433 12 N -0.158 5.158 13 C -0.045 4.045 14 C 0.205 3.795 15 O -0.515 6.515 16 N -0.190 5.190 17 C -0.466 4.466 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.551 5.551 21 Si 0.813 3.187 22 H -0.202 1.202 23 H -0.194 1.194 24 H -0.193 1.193 25 C 0.143 3.857 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.211 0.789 30 H 0.195 0.805 31 H 0.151 0.849 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.497 -10.853 -9.137 20.284 hybrid contribution 0.341 1.214 0.700 1.442 sum -14.156 -9.639 -8.438 19.091 Atomic orbital electron populations 1.23607 0.73845 1.05882 1.02866 1.86495 1.25387 1.31029 1.83988 1.20101 0.87383 0.81898 0.71974 1.90887 1.66878 1.36656 1.47993 1.18089 0.90891 0.92332 1.24701 1.22157 0.89151 1.00360 0.78011 1.17206 0.92133 0.85883 1.24746 1.24767 0.92580 0.91923 0.92104 1.81205 1.07811 1.12623 1.12012 1.18276 0.86429 0.84646 0.76866 1.90938 1.14674 1.86413 1.51262 1.44674 1.06682 1.09110 1.55329 1.22142 1.04845 0.81669 0.95812 1.20699 0.84190 0.83133 0.91440 1.90572 1.57593 1.55986 1.47315 1.41764 1.53037 1.15588 1.08597 1.19602 1.40409 1.01832 0.84802 0.90210 1.25986 0.95666 0.95465 1.03440 1.69635 1.41085 1.11501 1.32832 0.85041 0.78795 0.77557 0.77323 1.20244 1.19385 1.19304 1.22871 0.82615 1.01331 0.78837 0.91997 0.91328 0.84930 0.78873 0.80510 0.84851 0.76297 0.90995 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 113.37 1.20 1.48 16 2 O -0.35 -4.95 9.83 -56.64 -0.56 -5.51 16 3 C 0.54 9.68 7.88 70.23 0.55 10.23 16 4 O -0.53 -12.07 16.06 19.79 0.32 -11.75 16 5 C -0.25 -4.52 5.86 -20.21 -0.12 -4.64 16 6 C 0.13 2.19 9.43 23.10 0.22 2.40 16 7 C -0.19 -4.95 5.92 -19.72 -0.12 -5.07 16 8 C 0.30 9.07 15.06 88.33 1.33 10.40 16 9 N -0.46 -15.60 18.54 19.00 0.35 -15.25 16 10 C 0.54 17.23 7.58 86.42 0.66 17.89 16 11 O -0.55 -22.67 16.18 -4.74 -0.08 -22.75 16 12 N -0.46 -12.01 2.03 -647.47 -1.32 -13.33 16 13 C 0.08 2.14 5.78 85.63 0.50 2.64 16 14 C 0.42 17.63 7.84 87.66 0.69 18.32 16 15 O -0.63 -31.82 16.01 -3.07 -0.05 -31.87 16 16 N -0.55 -25.76 5.29 -306.98 -1.62 -27.39 16 17 C -0.34 -18.03 9.68 84.04 0.81 -17.21 16 18 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 19 C 0.00 -0.21 5.50 84.92 0.47 0.25 16 20 N -0.91 -46.30 13.05 21.66 0.28 -46.01 16 21 Si 0.99 41.19 29.55 68.60 2.03 43.22 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 C 0.28 5.54 9.79 84.30 0.83 6.37 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.19 1.97 7.65 -2.91 -0.02 1.95 16 30 H 0.18 2.77 7.98 -2.39 -0.02 2.75 16 31 H 0.13 3.57 7.37 -2.39 -0.02 3.55 16 32 H 0.40 17.29 7.90 -92.71 -0.73 16.56 16 33 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 34 H 0.21 3.12 7.47 -2.91 -0.02 3.10 16 Total: -1.00 -78.76 326.98 6.82 -71.94 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.46 Total: 15.63 kcal Atomic # 6 Polarization: 36.05 SS G_CDS: 7.01 Total: 43.06 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.31 Total: -101.98 kcal Atomic # 8 Polarization: -71.51 SS G_CDS: -0.36 Total: -71.87 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -78.76 6.82 -71.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318458648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.913 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds