Wall clock time and date at job start Fri Apr 10 2020 14:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42095 * 108.58131 * 2 1 4 4 O 1.42105 * 108.57974 * 228.97123 * 2 1 3 5 5 C 1.81405 * 101.92069 * 114.48971 * 2 1 3 6 6 C 1.53492 * 114.20653 * 184.99968 * 5 2 1 7 7 N 1.47066 * 87.98733 * 139.85010 * 6 5 2 8 8 C 1.34780 * 136.06263 * 152.62087 * 7 6 5 9 9 O 1.21583 * 119.99484 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00249 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47151 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99638 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99799 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99821 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99593 * 180.02562 * 15 14 12 18 18 N 1.31403 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99663 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47115 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47007 * 119.99756 * 19 17 15 22 22 H 1.48507 * 109.46910 * 239.99910 * 19 17 15 23 23 C 1.47067 * 87.88528 * 332.87766 * 7 6 5 24 24 H 1.08994 * 109.46644 * 305.51440 * 1 2 3 25 25 H 1.09000 * 109.46359 * 65.51170 * 1 2 3 26 26 H 1.08997 * 109.47380 * 185.51305 * 1 2 3 27 27 H 1.08998 * 113.28259 * 51.92744 * 5 2 1 28 28 H 1.09001 * 113.47148 * 25.07124 * 6 5 2 29 29 H 1.09003 * 113.52295 * 254.63559 * 6 5 2 30 30 H 0.96995 * 120.00199 * 0.02562 * 10 8 7 31 31 H 1.09005 * 109.47303 * 300.00582 * 11 10 8 32 32 H 1.09000 * 109.47219 * 60.00222 * 11 10 8 33 33 H 0.97001 * 119.99580 * 0.02562 * 14 12 11 34 34 H 0.97007 * 119.99669 * 180.02562 * 18 17 15 35 35 H 1.09003 * 113.46750 * 141.89678 * 23 7 6 36 36 H 1.09000 * 113.47312 * 272.34122 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7358 1.6153 6 6 3.6833 -0.7606 1.9641 7 7 3.3148 -0.3991 3.3412 8 6 3.8429 -0.5836 4.5674 9 8 4.8892 -1.1900 4.6936 10 7 3.2112 -0.0961 5.6536 11 6 3.7850 -0.2973 6.9864 12 6 2.8912 0.3393 8.0194 13 8 1.8747 0.9048 7.6760 14 7 3.2209 0.2792 9.3248 15 6 2.4075 0.8578 10.2646 16 1 1.5024 1.3614 9.9588 17 6 2.7478 0.7963 11.6104 18 7 3.8493 0.1840 11.9823 19 14 1.6391 1.5841 12.8909 20 1 0.4701 2.2058 12.2185 21 1 1.1687 0.5468 13.8438 22 1 2.3975 2.6264 13.6284 23 6 2.1131 0.2469 2.7921 24 1 -0.3632 0.5970 0.8365 25 1 -0.3632 0.4260 -0.9353 26 1 -0.3634 -1.0229 0.0987 27 1 1.6736 -1.6806 1.7882 28 1 4.2612 0.0095 1.4530 29 1 4.1331 -1.7499 1.8806 30 1 2.3764 0.3872 5.5529 31 1 3.8698 -1.3651 7.1881 32 1 4.7735 0.1601 7.0293 33 1 4.0337 -0.1735 9.5994 34 1 4.0866 0.1407 12.9219 35 1 1.2268 0.1137 3.4125 36 1 2.2727 1.2852 2.5015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333752460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:49 Heat of formation + Delta-G solvation = -81.920667 kcal Electronic energy + Delta-G solvation = -22331.614659 eV Core-core repulsion = 18559.606152 eV Total energy + Delta-G solvation = -3772.008507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.092 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.68313 -38.78284 -37.82382 -37.40271 -36.48656 -34.48380 -33.70599 -31.44382 -30.59134 -29.96637 -27.42131 -26.45443 -24.59767 -23.05235 -19.88916 -19.62308 -19.30902 -18.51207 -18.01973 -17.57212 -16.72140 -16.43266 -16.03905 -15.66357 -15.44341 -15.02583 -14.56880 -14.31141 -14.07548 -13.77619 -13.67939 -13.65035 -13.49979 -13.23471 -13.04987 -12.55435 -12.43712 -12.25254 -11.98267 -11.67357 -11.60820 -11.46290 -11.17481 -11.11494 -10.44096 -10.36381 -10.11599 -9.68673 -9.15995 -8.68162 -8.67491 -8.14191 -6.55114 -3.97295 -0.54615 2.13905 2.31277 2.92077 3.07292 3.19759 3.20642 3.26359 3.31153 3.68067 3.70201 3.79902 4.08502 4.26259 4.33019 4.39735 4.56733 4.83239 4.84833 4.91941 5.08620 5.13577 5.18696 5.31877 5.41619 5.85873 5.93678 6.03047 6.63922 7.12255 7.42631 7.88385 8.03081 8.40665 8.63354 9.00771 9.35189 9.82641 10.61775 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.002486 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.604046 B =11260.244302 C =11889.918717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.434 3.566 3 O -0.930 6.930 4 O -0.933 6.933 5 C -0.636 4.636 6 C 0.165 3.835 7 N -0.660 5.660 8 C 0.738 3.262 9 O -0.587 6.587 10 N -0.719 5.719 11 C 0.128 3.872 12 C 0.428 3.572 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.129 3.871 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.165 0.835 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.407 0.593 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.097 0.903 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -1.986 -21.286 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.613 3.387 3 O -0.927 6.927 4 O -0.930 6.930 5 C -0.743 4.743 6 C 0.040 3.960 7 N -0.401 5.401 8 C 0.441 3.559 9 O -0.465 6.465 10 N -0.376 5.376 11 C 0.000 4.000 12 C 0.214 3.786 13 O -0.486 6.486 14 N -0.183 5.183 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.004 3.996 24 H 0.151 0.849 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.183 0.817 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.245 0.755 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.003 -1.828 -21.556 22.205 hybrid contribution -1.033 -0.050 1.490 1.814 sum -6.036 -1.878 -20.066 21.039 Atomic orbital electron populations 1.30209 1.25877 1.11930 1.12108 1.07568 0.78746 0.75734 0.76611 1.93630 1.79272 1.33856 1.85961 1.93620 1.79260 1.67119 1.53028 1.32475 1.08219 1.13200 1.20455 1.22261 0.90007 1.03438 0.80291 1.48397 1.26782 1.60970 1.03982 1.15100 0.82573 0.79779 0.78470 1.90934 1.23447 1.47680 1.84431 1.44693 1.28312 1.60123 1.04439 1.20841 0.96961 1.01523 0.80715 1.19710 0.88342 0.86727 0.83823 1.90483 1.28244 1.49553 1.80277 1.41795 1.23613 1.48601 1.04258 1.19774 1.05524 1.32246 0.85899 0.87612 1.25338 0.96958 0.97171 0.98267 1.69621 1.23456 1.42137 1.18150 0.85751 0.79734 0.78680 0.79875 1.19131 1.20598 1.20582 1.22671 0.90812 0.96025 0.90061 0.84877 0.85061 0.85107 0.81683 0.88730 0.88276 0.75548 0.89867 0.89805 0.76980 0.91588 0.88471 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.47 10.62 101.05 1.07 -0.39 16 2 S 2.43 13.46 5.38 -107.50 -0.58 12.88 16 3 O -0.93 -8.43 17.29 -57.83 -1.00 -9.43 16 4 O -0.93 -8.60 18.10 -57.83 -1.05 -9.65 16 5 C -0.64 -3.58 4.51 -26.22 -0.12 -3.70 16 6 C 0.16 1.50 8.22 -8.51 -0.07 1.43 16 7 N -0.66 -8.05 3.69 -191.04 -0.70 -8.76 16 8 C 0.74 12.25 8.79 -86.92 -0.76 11.48 16 9 O -0.59 -11.72 17.12 5.29 0.09 -11.63 16 10 N -0.72 -12.10 5.53 -66.41 -0.37 -12.47 16 11 C 0.13 2.35 6.15 -5.19 -0.03 2.32 16 12 C 0.43 9.67 7.85 -10.98 -0.09 9.58 16 13 O -0.60 -14.98 15.24 5.55 0.08 -14.90 16 14 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 15 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 16 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.64 13.05 55.50 0.72 -22.91 16 19 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.13 0.99 7.86 -8.50 -0.07 0.92 16 24 H 0.13 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 26 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.17 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.41 6.58 7.15 -40.82 -0.29 6.29 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 9.34 7.90 -40.82 -0.32 9.01 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.72 7.44 -51.93 -0.39 0.34 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -38.21 331.96 -7.50 -45.71 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.31 Total: 10.50 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -0.30 Total: 13.89 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.41 Total: -57.61 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -1.87 Total: -45.61 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 13.46 SS G_CDS: -0.58 Total: 12.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.21 -7.50 -45.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333752460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.212 kcal (2) G-P(sol) polarization free energy of solvation -38.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds