Wall clock time and date at job start Fri Apr 10 2020 14:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42095 * 108.58131 * 2 1 4 4 O 1.42105 * 108.57974 * 228.97123 * 2 1 3 5 5 C 1.81405 * 101.92069 * 114.48971 * 2 1 3 6 6 C 1.53492 * 114.20653 * 184.99968 * 5 2 1 7 7 N 1.47066 * 87.98733 * 139.85010 * 6 5 2 8 8 C 1.34780 * 136.06263 * 152.62087 * 7 6 5 9 9 O 1.21583 * 119.99484 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00249 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47151 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99638 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99799 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99821 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99593 * 180.02562 * 15 14 12 18 18 N 1.31403 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99663 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47115 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47007 * 119.99756 * 19 17 15 22 22 H 1.48507 * 109.46910 * 239.99910 * 19 17 15 23 23 C 1.47067 * 87.88528 * 332.87766 * 7 6 5 24 24 H 1.08994 * 109.46644 * 305.51440 * 1 2 3 25 25 H 1.09000 * 109.46359 * 65.51170 * 1 2 3 26 26 H 1.08997 * 109.47380 * 185.51305 * 1 2 3 27 27 H 1.08998 * 113.28259 * 51.92744 * 5 2 1 28 28 H 1.09001 * 113.47148 * 25.07124 * 6 5 2 29 29 H 1.09003 * 113.52295 * 254.63559 * 6 5 2 30 30 H 0.96995 * 120.00199 * 0.02562 * 10 8 7 31 31 H 1.09005 * 109.47303 * 300.00582 * 11 10 8 32 32 H 1.09000 * 109.47219 * 60.00222 * 11 10 8 33 33 H 0.97001 * 119.99580 * 0.02562 * 14 12 11 34 34 H 0.97007 * 119.99669 * 180.02562 * 18 17 15 35 35 H 1.09003 * 113.46750 * 141.89678 * 23 7 6 36 36 H 1.09000 * 113.47312 * 272.34122 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7358 1.6153 6 6 3.6833 -0.7606 1.9641 7 7 3.3148 -0.3991 3.3412 8 6 3.8429 -0.5836 4.5674 9 8 4.8892 -1.1900 4.6936 10 7 3.2112 -0.0961 5.6536 11 6 3.7850 -0.2973 6.9864 12 6 2.8912 0.3393 8.0194 13 8 1.8747 0.9048 7.6760 14 7 3.2209 0.2792 9.3248 15 6 2.4075 0.8578 10.2646 16 1 1.5024 1.3614 9.9588 17 6 2.7478 0.7963 11.6104 18 7 3.8493 0.1840 11.9823 19 14 1.6391 1.5841 12.8909 20 1 0.4701 2.2058 12.2185 21 1 1.1687 0.5468 13.8438 22 1 2.3975 2.6264 13.6284 23 6 2.1131 0.2469 2.7921 24 1 -0.3632 0.5970 0.8365 25 1 -0.3632 0.4260 -0.9353 26 1 -0.3634 -1.0229 0.0987 27 1 1.6736 -1.6806 1.7882 28 1 4.2612 0.0095 1.4530 29 1 4.1331 -1.7499 1.8806 30 1 2.3764 0.3872 5.5529 31 1 3.8698 -1.3651 7.1881 32 1 4.7735 0.1601 7.0293 33 1 4.0337 -0.1735 9.5994 34 1 4.0866 0.1407 12.9219 35 1 1.2268 0.1137 3.4125 36 1 2.2727 1.2852 2.5015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333752460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:49 Heat of formation + Delta-G solvation = -115.426942 kcal Electronic energy + Delta-G solvation = -22333.067601 eV Core-core repulsion = 18559.606152 eV Total energy + Delta-G solvation = -3773.461449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.68363 -40.34854 -39.16917 -37.99946 -37.06130 -36.25876 -35.31573 -33.39047 -31.54899 -30.29967 -28.84161 -27.21201 -26.34287 -23.96944 -21.40291 -21.00846 -20.09305 -19.80834 -19.36009 -18.24865 -17.68894 -17.38627 -17.01206 -16.83886 -16.76462 -16.53191 -15.99701 -15.73260 -15.37740 -15.00128 -14.77257 -14.07446 -13.98068 -13.91179 -13.83366 -13.75288 -13.55172 -13.48509 -13.14812 -13.03342 -12.91695 -12.44762 -12.21825 -12.11176 -12.06162 -11.77094 -11.58383 -11.22527 -10.57313 -10.43639 -10.10729 -9.74658 -8.51523 -6.01746 -0.98997 1.22077 1.35183 1.43864 1.57846 1.75973 1.87702 2.00054 2.26978 2.37727 2.70465 2.84746 3.13693 3.15888 3.27199 3.65813 3.90558 4.10951 4.20154 4.22440 4.29921 4.33937 4.39059 4.41640 4.42442 4.61370 4.85403 5.08911 5.23445 5.38440 5.91378 6.02772 6.46824 6.83243 7.02851 7.35079 7.45013 7.92812 8.65647 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.002486 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.604046 B =11260.244302 C =11889.918717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.631 4.631 2 S 2.445 3.555 3 O -0.971 6.971 4 O -0.974 6.974 5 C -0.609 4.609 6 C 0.144 3.856 7 N -0.667 5.667 8 C 0.734 3.266 9 O -0.629 6.629 10 N -0.719 5.719 11 C 0.141 3.859 12 C 0.435 3.565 13 O -0.622 6.622 14 N -0.559 5.559 15 C -0.335 4.335 16 H 0.088 0.912 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.120 3.880 24 H 0.155 0.845 25 H 0.142 0.858 26 H 0.156 0.844 27 H 0.194 0.806 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.411 0.589 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.119 0.881 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -2.014 -21.845 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.628 3.372 3 O -0.968 6.968 4 O -0.972 6.972 5 C -0.716 4.716 6 C 0.020 3.980 7 N -0.407 5.407 8 C 0.437 3.563 9 O -0.511 6.511 10 N -0.376 5.376 11 C 0.012 3.988 12 C 0.222 3.778 13 O -0.510 6.510 14 N -0.194 5.194 15 C -0.465 4.465 16 H 0.106 0.894 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.003 4.003 24 H 0.173 0.827 25 H 0.160 0.840 26 H 0.174 0.826 27 H 0.212 0.788 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.249 0.751 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.966 -1.851 -22.172 23.314 hybrid contribution -0.477 -0.045 1.540 1.613 sum -7.444 -1.895 -20.632 22.016 Atomic orbital electron populations 1.30051 1.20301 1.14336 1.13785 1.07045 0.80550 0.74045 0.75511 1.93578 1.81371 1.35605 1.86256 1.93571 1.81406 1.67795 1.54381 1.32387 1.05516 1.14008 1.19727 1.22607 0.92902 1.03723 0.78780 1.48505 1.28168 1.60554 1.03466 1.15213 0.82137 0.79508 0.79490 1.90893 1.25244 1.49509 1.85426 1.44582 1.28481 1.60505 1.04013 1.20629 0.96127 1.01597 0.80431 1.20319 0.88124 0.85461 0.83894 1.90458 1.29480 1.50353 1.80752 1.41845 1.23694 1.49134 1.04761 1.19778 1.05830 1.33739 0.87110 0.89417 1.26149 0.98204 0.97250 0.99615 1.69688 1.24480 1.42624 1.18894 0.84799 0.77857 0.77991 0.77252 1.19259 1.19659 1.19762 1.23029 0.89795 0.96847 0.90640 0.82657 0.83980 0.82552 0.78847 0.88155 0.88376 0.75118 0.88885 0.89084 0.76706 0.91073 0.86291 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.19 10.62 113.37 1.20 1.01 16 2 S 2.44 22.49 5.38 -56.49 -0.30 22.18 16 3 O -0.97 -16.71 17.29 -127.37 -2.20 -18.91 16 4 O -0.97 -17.01 18.10 -127.37 -2.31 -19.31 16 5 C -0.61 -5.45 4.51 30.93 0.14 -5.31 16 6 C 0.14 2.51 8.22 83.18 0.68 3.19 16 7 N -0.67 -15.63 3.69 -876.58 -3.23 -18.87 16 8 C 0.73 24.13 8.79 179.05 1.57 25.71 16 9 O -0.63 -25.38 17.12 -3.98 -0.07 -25.45 16 10 N -0.72 -23.83 5.53 -482.30 -2.67 -26.49 16 11 C 0.14 5.15 6.15 85.63 0.53 5.68 16 12 C 0.44 19.72 7.85 87.66 0.69 20.40 16 13 O -0.62 -31.21 15.24 -3.05 -0.05 -31.26 16 14 N -0.56 -27.68 5.29 -306.98 -1.62 -29.30 16 15 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16 16 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 18 N -0.92 -48.32 13.05 21.66 0.28 -48.04 16 19 Si 1.00 41.09 29.55 68.60 2.03 43.12 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C 0.12 1.58 7.86 83.18 0.65 2.23 16 24 H 0.16 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.16 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.19 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 1.60 8.11 -2.39 -0.02 1.58 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.41 12.95 7.15 -92.71 -0.66 12.28 16 31 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 34 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.36 7.44 -2.39 -0.02 1.34 16 Total: -1.00 -83.70 331.96 -3.65 -87.34 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.26 Total: 29.56 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 6.75 Total: 35.42 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.24 Total: -122.71 kcal Atomic # 8 Polarization: -90.31 SS G_CDS: -4.62 Total: -94.93 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 22.49 SS G_CDS: -0.30 Total: 22.18 kcal Total: -83.70 -3.65 -87.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333752460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.082 kcal (2) G-P(sol) polarization free energy of solvation -83.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds