Wall clock time and date at job start Fri Apr 10 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38355 * 119.38395 * 2 1 4 4 C 1.38386 * 119.51997 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.81456 * 180.02562 * 4 3 2 6 6 C 1.39961 * 118.36658 * 0.02562 * 4 3 2 7 7 C 1.43203 * 120.61039 * 180.02562 * 6 4 3 8 8 N 4.80334 * 135.15640 * 359.95705 * 3 1 2 9 9 C 1.40623 * 118.77524 * 359.97438 * 6 4 3 10 10 S 1.76201 * 119.83333 * 179.97438 * 9 6 4 11 11 C 1.80998 * 99.99757 * 180.02562 * 10 9 6 12 12 C 1.50702 * 109.47126 * 180.02562 * 11 10 9 13 13 O 1.21288 * 120.00043 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00033 * 179.97438 * 14 12 11 16 16 C 1.50692 * 109.46936 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00361 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99426 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00207 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47190 * 89.99847 * 20 18 16 22 22 H 1.48503 * 109.47162 * 209.99968 * 20 18 16 23 23 H 1.48502 * 109.47183 * 329.99649 * 20 18 16 24 24 N 1.31854 * 119.38295 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47142 * 270.01514 * 1 2 3 26 26 H 1.09003 * 109.47224 * 30.01955 * 1 2 3 27 27 H 1.08999 * 109.47501 * 150.02010 * 1 2 3 28 28 H 1.07993 * 120.24318 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47138 * 90.00786 * 5 4 3 30 30 H 1.09007 * 109.46815 * 210.00708 * 5 4 3 31 31 H 1.08996 * 109.47386 * 330.00164 * 5 4 3 32 32 H 1.09000 * 109.47071 * 299.99653 * 11 10 9 33 33 H 1.08998 * 109.47201 * 60.00300 * 11 10 9 34 34 H 0.96998 * 120.00267 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.46456 * 299.99897 * 15 14 12 36 36 H 1.09002 * 109.47026 * 59.99350 * 15 14 12 37 37 H 0.96999 * 119.99474 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2056 0.0000 4 6 3.5697 1.2088 0.0005 5 6 4.3386 2.5049 0.0011 6 6 4.2376 -0.0211 0.0005 7 6 5.6686 -0.0738 0.0016 8 7 6.8039 -0.1156 0.0025 9 6 3.4774 -1.2042 0.0005 10 16 4.2895 -2.7679 -0.0002 11 6 2.8524 -3.8683 -0.0007 12 6 3.3174 -5.3018 -0.0008 13 8 4.5036 -5.5546 -0.0009 14 7 2.4151 -6.3029 -0.0016 15 6 2.8671 -7.6965 -0.0022 16 6 1.6707 -8.6127 -0.0026 17 1 0.6733 -8.1984 -0.0019 18 6 1.8493 -9.9799 -0.0037 19 7 3.0639 -10.4843 -0.0049 20 14 0.3662 -11.1156 -0.0048 21 1 -0.0266 -11.4153 -1.4051 22 1 0.7103 -12.3798 0.6943 23 1 -0.7640 -10.4545 0.6957 24 7 2.1539 -1.1489 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6398 2.1373 0.0004 29 1 4.5237 2.8171 1.0289 30 1 5.2896 2.3634 -0.5125 31 1 3.7588 3.2716 -0.5127 32 1 2.2516 -3.6817 0.8894 33 1 2.2516 -3.6809 -0.8906 34 1 1.4664 -6.1009 -0.0019 35 1 3.4683 -7.8830 -0.8922 36 1 3.4678 -7.8840 0.8878 37 1 3.1895 -11.4461 -0.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005642106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:42 Heat of formation + Delta-G solvation = 12.619005 kcal Electronic energy + Delta-G solvation = -20776.029556 eV Core-core repulsion = 17451.262611 eV Total energy + Delta-G solvation = -3324.766945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74533 -38.85883 -36.92593 -34.53044 -34.30851 -33.19170 -32.43314 -30.13840 -28.93819 -27.97527 -26.85909 -24.43658 -22.63175 -22.08470 -19.99986 -19.17664 -17.86035 -17.47475 -16.73157 -15.88455 -15.57038 -15.26267 -15.07374 -14.94332 -14.40310 -14.07126 -13.98086 -13.52667 -13.51439 -13.34147 -13.16350 -13.04636 -12.83055 -12.79117 -12.60247 -12.52610 -12.07203 -12.00292 -11.67212 -11.02257 -10.91626 -10.63905 -10.35251 -10.15337 -10.01281 -9.68132 -9.45131 -9.32041 -8.79430 -8.02452 -7.74407 -6.20155 -4.27667 0.18167 0.67985 1.20809 1.94357 2.48627 2.65221 3.14975 3.22391 3.28488 3.30822 3.41643 3.51600 3.92149 4.02994 4.06931 4.32569 4.44764 4.66186 4.86846 4.95336 5.04737 5.12998 5.15242 5.17602 5.21668 5.27294 5.38585 5.47124 5.52277 5.61767 5.69358 6.08553 7.21531 7.22378 7.28860 7.36860 7.45070 7.58969 7.91380 8.47453 8.68376 8.93875 9.38670 10.90017 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002771 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.674979 B =10100.942265 C =11245.565702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.179 3.821 3 C -0.192 4.192 4 C 0.028 3.972 5 C -0.125 4.125 6 C -0.082 4.082 7 C 0.256 3.744 8 N -0.397 5.397 9 C 0.156 3.844 10 S 0.040 5.960 11 C -0.142 4.142 12 C 0.511 3.489 13 O -0.542 6.542 14 N -0.702 5.702 15 C 0.250 3.750 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.494 5.494 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.394 0.606 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 27.357 0.073 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.037 3.963 3 C -0.216 4.216 4 C 0.017 3.983 5 C -0.181 4.181 6 C -0.096 4.096 7 C -0.060 4.060 8 N -0.073 5.073 9 C -0.095 4.095 10 S 0.284 5.716 11 C -0.293 4.293 12 C 0.294 3.706 13 O -0.421 6.421 14 N -0.350 5.350 15 C 0.129 3.871 16 C -0.583 4.583 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.208 5.208 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.227 0.773 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.320 25.627 0.075 25.841 hybrid contribution -2.617 0.436 0.004 2.653 sum -5.937 26.063 0.079 26.731 Atomic orbital electron populations 1.20835 0.87950 1.04160 1.03758 1.21552 0.97325 0.87951 0.89445 1.21661 0.93181 0.99616 1.07129 1.20250 0.93915 0.93669 0.90444 1.20958 1.00213 0.93166 1.03774 1.16268 0.85520 0.93534 1.14259 1.25119 0.92109 0.94455 0.94359 1.81257 1.11508 1.06313 1.08216 1.23880 0.92558 0.98422 0.94663 1.86830 1.07292 0.89557 1.87912 1.23812 1.00871 0.95804 1.08851 1.19614 0.87007 0.85652 0.78371 1.90726 1.16261 1.84279 1.50852 1.46375 1.08837 1.08129 1.71692 1.19190 0.96015 0.73872 0.98020 1.21198 0.92385 0.91216 1.53526 0.91783 1.24960 0.96328 0.98107 0.94622 1.69976 1.20634 1.12910 1.48649 0.86391 0.82148 0.79987 0.78250 1.20423 1.20976 1.19712 1.68116 1.06375 1.29137 1.17198 0.89608 0.90134 0.89813 0.83685 0.89472 0.90824 0.89805 0.86111 0.86106 0.77330 0.95265 0.95265 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.16 36.00 0.37 -0.18 16 2 C 0.18 1.44 6.78 -82.54 -0.56 0.88 16 3 C -0.19 -1.24 9.41 -39.48 -0.37 -1.61 16 4 C 0.03 0.22 5.95 -103.92 -0.62 -0.40 16 5 C -0.12 -0.66 9.68 36.00 0.35 -0.31 16 6 C -0.08 -0.91 5.77 -106.43 -0.61 -1.52 16 7 C 0.26 3.26 12.92 -22.47 -0.29 2.97 16 8 N -0.40 -5.81 18.54 41.84 0.78 -5.04 16 9 C 0.16 1.93 7.01 -16.38 -0.11 1.81 16 10 S 0.04 0.60 20.19 -107.50 -2.17 -1.57 16 11 C -0.14 -2.05 5.32 36.01 0.19 -1.86 16 12 C 0.51 10.08 7.85 -10.98 -0.09 9.99 16 13 O -0.54 -13.02 15.86 5.55 0.09 -12.94 16 14 N -0.70 -14.40 5.55 -61.47 -0.34 -14.74 16 15 C 0.25 6.52 5.43 -5.19 -0.03 6.50 16 16 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.91 13.29 55.43 0.74 -25.18 16 20 Si 0.91 20.62 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 N -0.49 -5.42 9.03 -7.93 -0.07 -5.49 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.47 7.19 -51.93 -0.37 0.09 16 31 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 32 H 0.12 1.52 8.12 -51.92 -0.42 1.10 16 33 H 0.12 1.52 8.12 -51.92 -0.42 1.10 16 34 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.77 346.94 -7.44 -41.21 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.47 Total: -0.14 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.19 Total: 3.06 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 1.10 Total: -50.44 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.17 Total: -1.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.77 -7.44 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005642106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.825 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds