Wall clock time and date at job start Fri Apr 10 2020 14:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38355 * 119.38395 * 2 1 4 4 C 1.38386 * 119.51997 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.81456 * 180.02562 * 4 3 2 6 6 C 1.39961 * 118.36658 * 0.02562 * 4 3 2 7 7 C 1.43203 * 120.61039 * 180.02562 * 6 4 3 8 8 N 4.80334 * 135.15640 * 359.95705 * 3 1 2 9 9 C 1.40623 * 118.77524 * 359.97438 * 6 4 3 10 10 S 1.76201 * 119.83333 * 179.97438 * 9 6 4 11 11 C 1.80998 * 99.99757 * 180.02562 * 10 9 6 12 12 C 1.50702 * 109.47126 * 180.02562 * 11 10 9 13 13 O 1.21288 * 120.00043 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00033 * 179.97438 * 14 12 11 16 16 C 1.50692 * 109.46936 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00361 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99426 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00207 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47190 * 89.99847 * 20 18 16 22 22 H 1.48503 * 109.47162 * 209.99968 * 20 18 16 23 23 H 1.48502 * 109.47183 * 329.99649 * 20 18 16 24 24 N 1.31854 * 119.38295 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47142 * 270.01514 * 1 2 3 26 26 H 1.09003 * 109.47224 * 30.01955 * 1 2 3 27 27 H 1.08999 * 109.47501 * 150.02010 * 1 2 3 28 28 H 1.07993 * 120.24318 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47138 * 90.00786 * 5 4 3 30 30 H 1.09007 * 109.46815 * 210.00708 * 5 4 3 31 31 H 1.08996 * 109.47386 * 330.00164 * 5 4 3 32 32 H 1.09000 * 109.47071 * 299.99653 * 11 10 9 33 33 H 1.08998 * 109.47201 * 60.00300 * 11 10 9 34 34 H 0.96998 * 120.00267 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.46456 * 299.99897 * 15 14 12 36 36 H 1.09002 * 109.47026 * 59.99350 * 15 14 12 37 37 H 0.96999 * 119.99474 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2056 0.0000 4 6 3.5697 1.2088 0.0005 5 6 4.3386 2.5049 0.0011 6 6 4.2376 -0.0211 0.0005 7 6 5.6686 -0.0738 0.0016 8 7 6.8039 -0.1156 0.0025 9 6 3.4774 -1.2042 0.0005 10 16 4.2895 -2.7679 -0.0002 11 6 2.8524 -3.8683 -0.0007 12 6 3.3174 -5.3018 -0.0008 13 8 4.5036 -5.5546 -0.0009 14 7 2.4151 -6.3029 -0.0016 15 6 2.8671 -7.6965 -0.0022 16 6 1.6707 -8.6127 -0.0026 17 1 0.6733 -8.1984 -0.0019 18 6 1.8493 -9.9799 -0.0037 19 7 3.0639 -10.4843 -0.0049 20 14 0.3662 -11.1156 -0.0048 21 1 -0.0266 -11.4153 -1.4051 22 1 0.7103 -12.3798 0.6943 23 1 -0.7640 -10.4545 0.6957 24 7 2.1539 -1.1489 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6398 2.1373 0.0004 29 1 4.5237 2.8171 1.0289 30 1 5.2896 2.3634 -0.5125 31 1 3.7588 3.2716 -0.5127 32 1 2.2516 -3.6817 0.8894 33 1 2.2516 -3.6809 -0.8906 34 1 1.4664 -6.1009 -0.0019 35 1 3.4683 -7.8830 -0.8922 36 1 3.4678 -7.8840 0.8878 37 1 3.1895 -11.4461 -0.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005642106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:41 Heat of formation + Delta-G solvation = -10.777050 kcal Electronic energy + Delta-G solvation = -20777.044086 eV Core-core repulsion = 17451.262611 eV Total energy + Delta-G solvation = -3325.781475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.094 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.45858 -40.58047 -37.90282 -36.24451 -35.20383 -34.44016 -33.84410 -31.60103 -29.62294 -28.78030 -28.41072 -25.29981 -24.58886 -22.69690 -21.70720 -20.05555 -19.20495 -18.44215 -18.03843 -17.60607 -17.02026 -16.81057 -16.10379 -16.02203 -15.66405 -15.18247 -14.72335 -14.70933 -14.58778 -14.24119 -14.17216 -14.04024 -14.01978 -13.69338 -13.60618 -13.57965 -13.12089 -13.09150 -12.92269 -12.71681 -12.62386 -12.23675 -11.69670 -11.50510 -11.07625 -10.83166 -10.78158 -10.73618 -10.45698 -9.94775 -8.82223 -8.30227 -6.47147 -0.57776 0.01516 0.14216 0.88196 1.43739 1.46090 1.50391 1.53988 1.57470 1.80472 2.28020 2.48464 2.62510 2.67166 3.05092 3.34373 3.53715 3.75034 3.79110 4.02392 4.09383 4.27037 4.32711 4.54850 4.59668 4.71378 4.91020 4.99471 5.06412 5.07216 5.13131 5.20070 5.27628 5.41302 5.58335 5.61292 5.81191 6.28737 6.61979 6.62934 6.73113 7.19243 7.34463 8.82060 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002771 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.674979 B =10100.942265 C =11245.565702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.172 3.828 3 C -0.169 4.169 4 C 0.032 3.968 5 C -0.124 4.124 6 C -0.100 4.100 7 C 0.273 3.727 8 N -0.444 5.444 9 C 0.154 3.846 10 S -0.035 6.035 11 C -0.111 4.111 12 C 0.509 3.491 13 O -0.590 6.590 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.555 4.555 17 H 0.088 0.912 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.253 1.253 24 N -0.509 5.509 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.192 0.808 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.413 0.587 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 30.334 0.102 32.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.191 4.191 4 C 0.022 3.978 5 C -0.180 4.180 6 C -0.113 4.113 7 C -0.042 4.042 8 N -0.120 5.120 9 C -0.098 4.098 10 S 0.208 5.792 11 C -0.262 4.262 12 C 0.294 3.706 13 O -0.471 6.471 14 N -0.345 5.345 15 C 0.143 3.857 16 C -0.593 4.593 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.177 1.177 24 N -0.223 5.223 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.209 0.791 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.250 0.750 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.603 28.671 0.104 29.662 hybrid contribution -1.359 -0.287 -0.005 1.389 sum -8.962 28.383 0.099 29.765 Atomic orbital electron populations 1.20969 0.85434 1.05305 1.04786 1.22228 0.98896 0.87603 0.88230 1.22167 0.92427 1.00858 1.03690 1.20624 0.94814 0.93235 0.89166 1.21065 0.99695 0.92508 1.04768 1.16475 0.84430 0.94612 1.15810 1.25494 0.92558 0.93110 0.93067 1.81249 1.12864 1.07810 1.10070 1.23332 0.93314 0.96353 0.96759 1.87068 1.09415 0.92927 1.89751 1.23516 1.00433 0.91262 1.10997 1.20441 0.86087 0.87593 0.76439 1.90707 1.18541 1.85461 1.52429 1.46047 1.10099 1.06317 1.72010 1.18623 0.95503 0.77191 0.94378 1.21606 0.93156 0.91585 1.52950 0.89452 1.26095 0.99616 1.00165 0.93827 1.70146 1.23558 1.13420 1.49925 0.85132 0.78155 0.77177 0.78613 1.19588 1.21117 1.17671 1.68057 1.05494 1.31024 1.17760 0.88439 0.87138 0.90588 0.79123 0.88269 0.92353 0.86593 0.83752 0.83751 0.75028 0.99216 0.99204 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.16 71.23 0.72 0.14 16 2 C 0.17 2.09 6.78 42.58 0.29 2.38 16 3 C -0.17 -1.35 9.41 22.33 0.21 -1.14 16 4 C 0.03 0.41 5.95 -19.41 -0.12 0.29 16 5 C -0.12 -0.89 9.68 71.23 0.69 -0.21 16 6 C -0.10 -2.11 5.77 -21.03 -0.12 -2.23 16 7 C 0.27 7.17 12.92 88.33 1.14 8.31 16 8 N -0.44 -13.65 18.54 19.01 0.35 -13.30 16 9 C 0.15 3.69 7.01 85.18 0.60 4.29 16 10 S -0.03 -1.10 20.19 -56.49 -1.14 -2.24 16 11 C -0.11 -3.19 5.32 71.24 0.38 -2.81 16 12 C 0.51 20.72 7.85 87.66 0.69 21.40 16 13 O -0.59 -30.10 15.86 -3.05 -0.05 -30.15 16 14 N -0.69 -29.04 5.55 -466.77 -2.59 -31.63 16 15 C 0.27 14.56 5.43 85.63 0.46 15.03 16 16 C -0.56 -29.85 9.28 25.60 0.24 -29.61 16 17 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 20 Si 0.99 41.94 29.54 68.60 2.03 43.97 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 24 N -0.51 -10.04 9.03 -179.00 -1.62 -11.66 16 25 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.11 -0.03 8.07 -2.39 -0.02 -0.05 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.19 -0.17 8.06 -2.91 -0.02 -0.19 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.64 7.19 -2.38 -0.02 0.63 16 31 H 0.12 0.12 8.10 -2.39 -0.02 0.10 16 32 H 0.14 3.44 8.12 -2.40 -0.02 3.42 16 33 H 0.14 3.44 8.12 -2.40 -0.02 3.42 16 34 H 0.41 13.83 8.32 -92.71 -0.77 13.05 16 35 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -79.81 346.94 3.25 -76.55 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.34 Total: 8.09 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 5.64 Total: 16.45 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -3.57 Total: -112.68 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -1.14 Total: -2.24 kcal Total: -79.81 3.25 -76.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005642106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.776 kcal (2) G-P(sol) polarization free energy of solvation -79.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds