Wall clock time and date at job start Fri Apr 10 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34171 * 125.44024 * 2 1 4 4 C 1.47022 * 105.95599 * 179.97438 * 3 2 1 5 5 C 1.47376 * 127.19372 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00518 * 137.96412 * 5 4 3 7 7 N 1.34780 * 120.00079 * 317.95684 * 5 4 3 8 8 C 1.46501 * 119.99599 * 3.98741 * 7 5 4 9 9 C 1.50702 * 109.47279 * 93.67093 * 8 7 5 10 10 H 1.08001 * 120.00042 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99840 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00093 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99714 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47448 * 59.99876 * 13 11 9 15 15 H 1.48504 * 109.46900 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47234 * 299.99954 * 13 11 9 17 17 C 1.46496 * 120.00397 * 183.97911 * 7 5 4 18 18 C 1.53002 * 109.46880 * 93.16428 * 17 7 5 19 19 F 1.39907 * 109.46807 * 60.00094 * 18 17 7 20 20 F 1.39899 * 109.47188 * 179.97438 * 18 17 7 21 21 F 1.39899 * 109.47335 * 300.00271 * 18 17 7 22 22 C 1.36421 * 105.61454 * 359.97438 * 4 3 2 23 23 C 1.50694 * 125.80065 * 180.02562 * 22 4 3 24 24 O 1.33653 * 108.39353 * 359.75950 * 22 4 3 25 25 H 1.08999 * 109.46904 * 89.99441 * 1 2 3 26 26 H 1.09007 * 109.46767 * 330.00434 * 1 2 3 27 27 H 1.08993 * 109.47133 * 210.00294 * 1 2 3 28 28 H 1.08001 * 127.02639 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46887 * 213.67150 * 8 7 5 30 30 H 1.09001 * 109.47332 * 333.66541 * 8 7 5 31 31 H 0.96998 * 119.99915 * 179.97438 * 12 11 9 32 32 H 1.08996 * 109.47362 * 213.16395 * 17 7 5 33 33 H 1.09001 * 109.46974 * 333.17327 * 17 7 5 34 34 H 1.09005 * 109.47180 * 90.00639 * 23 22 4 35 35 H 1.09007 * 109.47317 * 210.00403 * 23 22 4 36 36 H 1.09001 * 109.47259 * 330.00510 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9025 1.4123 0.0014 6 8 5.8400 1.0927 0.7070 7 7 4.9899 2.5070 -0.7801 8 6 3.8309 2.9418 -1.5637 9 6 3.0524 3.9683 -0.7818 10 1 3.3871 4.2667 0.2007 11 6 1.9128 4.5266 -1.3209 12 7 1.5054 4.1637 -2.5175 13 14 0.9482 5.7995 -0.3520 14 1 1.8190 6.9678 -0.0654 15 1 -0.2260 6.2411 -1.1469 16 1 0.4850 5.2021 0.9261 17 6 6.2435 3.2620 -0.8457 18 6 7.0830 2.7554 -2.0203 19 9 6.3707 2.9295 -3.2119 20 9 8.2800 3.4769 -2.0835 21 9 7.3655 1.3972 -1.8401 22 6 3.5790 -0.7584 0.0015 23 6 4.7389 -1.7203 0.0030 24 8 2.2852 -1.0935 0.0068 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 0.8901 0.5138 27 1 -0.3633 -0.8899 0.5138 28 1 1.9597 2.1230 -0.0004 29 1 4.1707 3.3806 -2.5018 30 1 3.1921 2.0841 -1.7741 31 1 0.7035 4.5562 -2.8966 32 1 6.0234 4.3203 -0.9862 33 1 6.7984 3.1263 0.0826 34 1 5.0178 -1.9517 1.0310 35 1 4.4508 -2.6377 -0.5105 36 1 5.5871 -1.2676 -0.5105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076092225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:34 Heat of formation + Delta-G solvation = -182.417451 kcal Electronic energy + Delta-G solvation = -26442.649019 eV Core-core repulsion = 22092.522295 eV Total energy + Delta-G solvation = -4350.126723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.66625 -47.22264 -47.11185 -42.04477 -38.99764 -35.33562 -32.99384 -32.54655 -32.45852 -29.77861 -28.81009 -27.16089 -24.74244 -23.44865 -23.16248 -21.80259 -20.31876 -18.30851 -18.11521 -17.83665 -17.26049 -16.59618 -16.18143 -15.94359 -15.43376 -15.25639 -14.51505 -14.12053 -14.04643 -13.98309 -13.60774 -13.43585 -13.31592 -13.30179 -13.09990 -13.05942 -12.66103 -12.51608 -12.38134 -12.33898 -12.06571 -11.89588 -11.74771 -11.21128 -11.16089 -11.04582 -10.81164 -10.31888 -9.93732 -9.49031 -8.99505 -8.60830 -8.11168 -7.81980 -6.27500 -4.35616 1.92891 2.68906 3.04162 3.16814 3.20855 3.23299 3.25611 3.54974 3.72550 4.22152 4.31074 4.46396 4.71092 4.94387 5.04552 5.22404 5.34464 5.48478 5.60814 5.69079 5.72599 5.77443 5.81075 5.93088 6.05753 6.20452 6.45781 6.53583 6.58535 7.14446 7.19138 7.31768 7.61654 7.65397 7.93802 8.03962 8.63577 8.78042 9.29968 10.78670 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.008061 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.398201 B = 3472.758708 C = 5586.259674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.045 4.045 3 C -0.146 4.146 4 C -0.219 4.219 5 C 0.597 3.403 6 O -0.557 6.557 7 N -0.588 5.588 8 C 0.228 3.772 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.882 5.882 13 Si 0.893 3.107 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.081 3.919 18 C 0.431 3.569 19 F -0.178 7.178 20 F -0.189 7.189 21 F -0.183 7.183 22 C 0.042 3.958 23 C -0.068 4.068 24 O -0.182 6.182 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.186 0.814 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -6.050 2.167 7.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C -0.165 4.165 4 C -0.224 4.224 5 C 0.387 3.613 6 O -0.437 6.437 7 N -0.318 5.318 8 C 0.109 3.891 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.519 5.519 13 Si 0.720 3.280 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.046 4.046 18 C 0.376 3.624 19 F -0.160 7.160 20 F -0.171 7.171 21 F -0.164 7.164 22 C -0.010 4.010 23 C -0.124 4.124 24 O -0.080 6.080 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.203 0.797 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.094 -6.469 2.342 7.544 hybrid contribution -0.451 1.033 0.058 1.129 sum 2.643 -5.436 2.399 6.503 Atomic orbital electron populations 1.20196 0.85224 1.03263 1.03313 1.22188 0.93758 0.83670 1.09600 1.23493 0.89606 1.01388 1.01963 1.20958 0.94477 0.92679 1.14254 1.17383 0.85568 0.79704 0.78640 1.90704 1.39735 1.71237 1.42033 1.47986 1.12283 1.25962 1.45617 1.19830 0.81631 0.96688 0.90916 1.21391 1.09701 1.23625 1.03391 0.91895 1.24925 0.97148 0.96545 0.94934 1.69928 1.24144 1.42553 1.15240 0.86624 0.79481 0.81864 0.79984 1.20042 1.21040 1.19928 1.22393 0.87147 0.99129 0.95918 1.21564 0.78998 0.75845 0.86037 1.93201 1.77862 1.95048 1.49875 1.93140 1.49092 1.78060 1.96824 1.93172 1.93980 1.33917 1.95349 1.22409 0.83143 0.93661 1.01829 1.20316 0.91864 0.96492 1.03773 1.83578 1.15801 1.35924 1.72667 0.90377 0.89477 0.91368 0.79728 0.93956 0.92718 0.92271 0.85736 0.86308 0.89702 0.90815 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.40 36.01 0.37 -0.49 16 2 C -0.04 -0.80 7.28 -35.74 -0.26 -1.06 16 3 C -0.15 -2.98 8.62 -37.46 -0.32 -3.31 16 4 C -0.22 -4.52 5.32 -103.27 -0.55 -5.07 16 5 C 0.60 12.75 6.93 -12.54 -0.09 12.67 16 6 O -0.56 -12.26 16.04 5.27 0.08 -12.17 16 7 N -0.59 -12.26 2.37 -176.35 -0.42 -12.68 16 8 C 0.23 5.29 4.52 -5.19 -0.02 5.27 16 9 C -0.54 -13.19 7.14 -34.44 -0.25 -13.44 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.07 1.70 5.37 -17.82 -0.10 1.61 16 12 N -0.88 -22.95 13.29 55.43 0.74 -22.21 16 13 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 C 0.08 1.43 5.52 -4.04 -0.02 1.41 16 18 C 0.43 7.50 3.29 37.16 0.12 7.62 16 19 F -0.18 -3.36 15.87 2.25 0.04 -3.33 16 20 F -0.19 -3.00 17.32 2.25 0.04 -2.96 16 21 F -0.18 -3.37 16.89 2.25 0.04 -3.33 16 22 C 0.04 0.76 7.37 -34.97 -0.26 0.50 16 23 C -0.07 -0.97 9.93 36.00 0.36 -0.62 16 24 O -0.18 -3.24 10.52 7.65 0.08 -3.16 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.19 4.12 5.45 -52.49 -0.29 3.84 16 29 H 0.04 1.04 6.91 -51.93 -0.36 0.68 16 30 H 0.06 1.36 5.42 -51.93 -0.28 1.07 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.12 2.03 8.10 -51.93 -0.42 1.61 16 33 H 0.12 1.97 7.28 -51.93 -0.38 1.59 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.36 7.76 -51.93 -0.40 0.95 16 LS Contribution 322.58 15.07 4.86 4.86 Total: -1.00 -28.06 322.58 -4.36 -32.42 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.79 Total: 3.16 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.01 Total: 5.10 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.32 Total: -34.89 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.16 Total: -15.33 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 0.11 Total: -9.63 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.06 -4.36 -32.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.002 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds