Wall clock time and date at job start Fri Apr 10 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34171 * 125.44024 * 2 1 4 4 C 1.47022 * 105.95599 * 179.97438 * 3 2 1 5 5 C 1.47376 * 127.19372 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00518 * 137.96412 * 5 4 3 7 7 N 1.34780 * 120.00079 * 317.95684 * 5 4 3 8 8 C 1.46501 * 119.99599 * 3.98741 * 7 5 4 9 9 C 1.50702 * 109.47279 * 93.67093 * 8 7 5 10 10 H 1.08001 * 120.00042 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99840 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00093 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99714 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47448 * 59.99876 * 13 11 9 15 15 H 1.48504 * 109.46900 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47234 * 299.99954 * 13 11 9 17 17 C 1.46496 * 120.00397 * 183.97911 * 7 5 4 18 18 C 1.53002 * 109.46880 * 93.16428 * 17 7 5 19 19 F 1.39907 * 109.46807 * 60.00094 * 18 17 7 20 20 F 1.39899 * 109.47188 * 179.97438 * 18 17 7 21 21 F 1.39899 * 109.47335 * 300.00271 * 18 17 7 22 22 C 1.36421 * 105.61454 * 359.97438 * 4 3 2 23 23 C 1.50694 * 125.80065 * 180.02562 * 22 4 3 24 24 O 1.33653 * 108.39353 * 359.75950 * 22 4 3 25 25 H 1.08999 * 109.46904 * 89.99441 * 1 2 3 26 26 H 1.09007 * 109.46767 * 330.00434 * 1 2 3 27 27 H 1.08993 * 109.47133 * 210.00294 * 1 2 3 28 28 H 1.08001 * 127.02639 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46887 * 213.67150 * 8 7 5 30 30 H 1.09001 * 109.47332 * 333.66541 * 8 7 5 31 31 H 0.96998 * 119.99915 * 179.97438 * 12 11 9 32 32 H 1.08996 * 109.47362 * 213.16395 * 17 7 5 33 33 H 1.09001 * 109.46974 * 333.17327 * 17 7 5 34 34 H 1.09005 * 109.47180 * 90.00639 * 23 22 4 35 35 H 1.09007 * 109.47317 * 210.00403 * 23 22 4 36 36 H 1.09001 * 109.47259 * 330.00510 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9025 1.4123 0.0014 6 8 5.8400 1.0927 0.7070 7 7 4.9899 2.5070 -0.7801 8 6 3.8309 2.9418 -1.5637 9 6 3.0524 3.9683 -0.7818 10 1 3.3871 4.2667 0.2007 11 6 1.9128 4.5266 -1.3209 12 7 1.5054 4.1637 -2.5175 13 14 0.9482 5.7995 -0.3520 14 1 1.8190 6.9678 -0.0654 15 1 -0.2260 6.2411 -1.1469 16 1 0.4850 5.2021 0.9261 17 6 6.2435 3.2620 -0.8457 18 6 7.0830 2.7554 -2.0203 19 9 6.3707 2.9295 -3.2119 20 9 8.2800 3.4769 -2.0835 21 9 7.3655 1.3972 -1.8401 22 6 3.5790 -0.7584 0.0015 23 6 4.7389 -1.7203 0.0030 24 8 2.2852 -1.0935 0.0068 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 0.8901 0.5138 27 1 -0.3633 -0.8899 0.5138 28 1 1.9597 2.1230 -0.0004 29 1 4.1707 3.3806 -2.5018 30 1 3.1921 2.0841 -1.7741 31 1 0.7035 4.5562 -2.8966 32 1 6.0234 4.3203 -0.9862 33 1 6.7984 3.1263 0.0826 34 1 5.0178 -1.9517 1.0310 35 1 4.4508 -2.6377 -0.5105 36 1 5.5871 -1.2676 -0.5105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076092225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:34 Heat of formation + Delta-G solvation = -197.120664 kcal Electronic energy + Delta-G solvation = -26443.286598 eV Core-core repulsion = 22092.522295 eV Total energy + Delta-G solvation = -4350.764302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.10347 -48.62107 -48.59428 -43.48416 -40.63776 -37.03602 -34.75513 -34.02942 -33.83968 -31.23100 -30.13203 -28.95006 -26.13882 -24.99018 -24.86038 -23.29883 -21.82280 -19.79877 -19.55704 -19.33102 -18.94718 -18.21391 -17.85127 -17.37325 -16.94028 -16.81486 -16.26138 -15.65340 -15.49853 -15.47178 -15.04246 -14.92644 -14.76813 -14.75252 -14.45236 -14.28643 -14.16723 -14.01205 -13.90495 -13.45352 -13.42761 -13.32831 -13.20406 -12.91071 -12.82670 -12.60622 -12.41139 -12.10418 -11.78588 -11.15292 -10.67328 -10.39882 -9.81843 -9.23657 -8.18531 -6.32275 0.46136 1.17997 1.44663 1.46762 1.52681 1.57229 1.83042 2.02579 2.13738 2.43033 2.84430 3.02821 3.12100 3.28038 3.60318 3.73387 4.02775 4.15696 4.32020 4.36974 4.53171 4.61456 4.69953 4.72067 4.74542 4.81314 4.98994 5.12989 5.23668 5.29399 5.52107 5.63061 5.72523 6.03568 6.17147 6.31183 6.76063 7.06961 7.36835 8.87586 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.008061 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.398201 B = 3472.758708 C = 5586.259674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.034 4.034 3 C -0.178 4.178 4 C -0.258 4.258 5 C 0.595 3.405 6 O -0.568 6.568 7 N -0.593 5.593 8 C 0.247 3.753 9 C -0.543 4.543 10 H 0.057 0.943 11 C 0.032 3.968 12 N -0.911 5.911 13 Si 0.950 3.050 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.077 3.923 18 C 0.439 3.561 19 F -0.188 7.188 20 F -0.177 7.177 21 F -0.188 7.188 22 C 0.050 3.950 23 C -0.066 4.066 24 O -0.176 6.176 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.162 0.838 29 H 0.025 0.975 30 H 0.037 0.963 31 H 0.269 0.731 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -6.718 2.890 7.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.262 4.262 5 C 0.386 3.614 6 O -0.450 6.450 7 N -0.323 5.323 8 C 0.127 3.873 9 C -0.581 4.581 10 H 0.075 0.925 11 C -0.170 4.170 12 N -0.549 5.549 13 Si 0.776 3.224 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.048 4.048 18 C 0.383 3.617 19 F -0.170 7.170 20 F -0.158 7.158 21 F -0.170 7.170 22 C -0.002 4.002 23 C -0.122 4.122 24 O -0.074 6.074 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.180 0.820 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.712 -7.136 3.070 8.228 hybrid contribution -0.296 1.198 -0.168 1.246 sum 2.417 -5.937 2.901 7.036 Atomic orbital electron populations 1.20390 0.82195 1.05017 1.04358 1.22817 0.95354 0.82877 1.07106 1.23291 0.90376 1.01161 1.04915 1.21123 0.94299 0.93976 1.16783 1.17550 0.85804 0.79711 0.78372 1.90675 1.40250 1.71562 1.42480 1.47923 1.12717 1.26303 1.45310 1.19416 0.82006 0.95551 0.90286 1.21471 1.09957 1.23621 1.03061 0.92479 1.25535 0.97830 0.98042 0.95578 1.70022 1.24639 1.43693 1.16548 0.85727 0.78204 0.79630 0.78883 1.19915 1.20829 1.19376 1.22591 0.86133 0.99465 0.96660 1.21398 0.79240 0.75624 0.85465 1.93186 1.78225 1.95083 1.50465 1.93164 1.48248 1.77691 1.96736 1.93162 1.94020 1.34461 1.95340 1.23045 0.84009 0.93564 0.99606 1.20470 0.89945 0.96722 1.05101 1.83621 1.15755 1.35709 1.72265 0.89543 0.88876 0.88460 0.82019 0.95720 0.94501 0.92225 0.84521 0.85023 0.88067 0.87682 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.60 10.40 71.24 0.74 -0.86 16 2 C -0.03 -1.18 7.28 24.76 0.18 -1.00 16 3 C -0.18 -7.39 8.62 23.65 0.20 -7.19 16 4 C -0.26 -10.68 5.32 -18.99 -0.10 -10.78 16 5 C 0.59 25.59 6.93 86.65 0.60 26.19 16 6 O -0.57 -24.88 16.04 -4.07 -0.07 -24.95 16 7 N -0.59 -24.97 2.37 -830.09 -1.97 -26.94 16 8 C 0.25 11.74 4.52 85.63 0.39 12.12 16 9 C -0.54 -26.74 7.14 25.60 0.18 -26.56 16 10 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 11 C 0.03 1.58 5.37 84.65 0.45 2.03 16 12 N -0.91 -47.90 13.29 21.45 0.28 -47.62 16 13 Si 0.95 39.51 29.54 68.60 2.03 41.54 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 15 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 17 C 0.08 2.71 5.52 86.38 0.48 3.19 16 18 C 0.44 15.02 3.29 71.98 0.24 15.26 16 19 F -0.19 -7.10 15.87 44.97 0.71 -6.38 16 20 F -0.18 -5.39 17.32 44.97 0.78 -4.62 16 21 F -0.19 -6.86 16.89 44.97 0.76 -6.10 16 22 C 0.05 1.78 7.37 25.26 0.19 1.96 16 23 C -0.07 -1.77 9.93 71.23 0.71 -1.06 16 24 O -0.18 -5.99 10.52 4.45 0.05 -5.95 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.16 7.45 5.45 -2.91 -0.02 7.44 16 29 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 30 H 0.04 1.90 5.42 -2.39 -0.01 1.88 16 31 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 32 H 0.14 4.40 8.10 -2.39 -0.02 4.38 16 33 H 0.13 4.27 7.28 -2.39 -0.02 4.25 16 34 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.11 16 36 H 0.08 2.32 7.76 -2.39 -0.02 2.30 16 Total: -1.00 -59.71 322.58 7.96 -51.75 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.13 Total: 15.95 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 4.26 Total: 13.31 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.68 Total: -74.56 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.02 Total: -30.90 kcal Atomic # 9 Polarization: -19.35 SS G_CDS: 2.25 Total: -17.10 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -59.71 7.96 -51.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.367 kcal (2) G-P(sol) polarization free energy of solvation -59.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds